Resident-invader phylogenetic relatedness, not resident phylogenetic diversity, controls community invasibility

American Naturalist

Volumn 186, Issue 1, 2015, Pages 59-71

  Tan, Jiaqi ^a   Pu, Zhichao ^a   Ryberg, Wade A ^b   Jiang, Lin ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Bacteria; Community invasibility; Phylogenetic diversity; Phylogenetic relatedness

Indexed keywords

ABUNDANCE; BACTERIUM; BIOLOGICAL INVASION; INVASIBILITY; MICROBIAL COMMUNITY; NATURAL SELECTION; PHYLOGENETICS; RELATEDNESS; SPECIES DIVERSITY;

BACTERIA (MICROORGANISMS);

BACTERIUM; BIODIVERSITY; ECOSYSTEM; GENETICS; INTRODUCED SPECIES; PHYLOGENY; POPULATION DYNAMICS;

BACTERIA; BIODIVERSITY; ECOSYSTEM; INTRODUCED SPECIES; PHYLOGENY; POPULATION DYNAMICS;

EID: 84933567948     PISSN: 00030147     EISSN: None     Source Type: Journal    
DOI: 10.1086/681584     Document Type: Article

References (73)

1. Allen, C. R., K. T. Nemec, D. A. Wardwell, J. D. Hoffman, M. Brust, K. L. Decker, D. Fogell, et al. 2013. Predictors of regional establishment success and spread of introduced non-indigenous vertebrates. Global Ecology and Biogeography 22:889-899.
2. Arenas, F., I. Sanchez, S. J. Hawkins, and S. R. Jenkins. 2006. The invasibility of marine algal assemblages: role of functional diversity and identity. Ecology 87:2851-2861.
3. Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate-a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B (Methodological) 57:289-300.
4. Best, R. J., N. C. Caulk, and J. J. Stachowicz. 2013. Trait vs. phylogenetic diversity as predictors of competition and community composition in herbivorous marine amphipods. Ecology Letters 16: 72-80.
5. Blomberg, S. P., T. Garland, and A. R. Ives. 2003. Testing for phylogenetic signal in comparative data: behavioral traits are more labile. Evolution 57:717-745.
6. Boucher, Y., C. J. Douady, R. T. Papke, D. A. Walsh, M. E. R. Boudreau, C. L. Nesbo, R. J. Case, and W. F. Doolittle. 2003. Lateral gene transfer and the origins of prokaryotic groups. Annual Review of Genetics 37:283-328.
7. Britton-Simmons, K. H. 2006. Functional group diversity, resource preemption and the genesis of invasion resistance in a community of marine algae. Oikos 113:395-401.
8. Burns, J. H., and S. Y. Strauss. 2011. More closely related species are more ecologically similar in an experimental test. Proceedings of the National Academy of Sciences of the USA 108:5302-5307.
9. Byun, C., S. de Blois, and J. Brisson. 2013. Plant functional group identity and diversity determine biotic resistance to invasion by an exotic grass. Journal of Ecology 101:128-139.
10. Cadotte, M. W., T. J. Davies, J. Regetz, S. W. Kembel, E. Cleland, and T. H. Oakley. 2010. Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology Letters 13:96-105.
11. Carboni, M., T. Muenkemueller, L. Gallien, S. Lavergne, A. Acosta, and W. Thuiller. 2013. Darwin's naturalization hypothesis: scale matters in coastal plant communities. Ecography 36:560-568.
12. Cavender-Bares, J., K. H. Kozak, P. V. A. Fine, and S. W. Kembel. 2009. The merging of community ecology and phylogenetic biology. Ecology Letters 12:693-715.
13. Darwin, C. 1859. The origin of species. J. Murray, London.
14. DeSantis, T. Z., P. Hugenholtz, K. Keller, E. L. Brodie, N. Larsen, Y.M. Piceno, R. Phan, and G. L. Andersen. 2006. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Research 34:W394-W399.
15. Devictor, V., D. Mouillot, C. Meynard, F. Jiguet, W. Thuiller, and N. Mouquet. 2010. Spatial mismatch and congruence between taxonomic, phylogenetic and functional diversity: the need for integrative conservation strategies in a changing world. Ecology Letters 13:1030-1040.
16. Diaz, S., and M. Cabido. 2001. Vive la difference: plant functional diversity matters to ecosystem processes. Trends in Ecology and Evolution 16:646-655.
17. Donoghue, M. J. 2008. A phylogenetic perspective on the distribution of plant diversity. Proceedings of the National Academy of Sciences of the USA 105:11549-11555.
18. Dray, S., and A. B. Dufour. 2007. The ade4 package: implementing the duality diagram for ecologists. Journal of Statistical Software 224:1-20.
19. Dukes, J. S. 2001. Biodiversity and invasibility in grassland microcosms. Oecologia (Berlin) 126:563-568.
20. Duncan, R. P., and P. A. Williams. 2002. Ecology-Darwin's naturalization hypothesis challenged. Nature 417:608-609.
21. Eisenhauer, N., W. Schulz, S. Scheu, and A. Jousset. 2013. Niche dimensionality links biodiversity and invasibility of microbial communities. Functional Ecology 27:282-288.
22. Elton, C. S. 1958. The ecology of invasions by animals and plants. Methuen, London.
23. Faith, D. P. 1992. Conservation evaluation and phylogenetic diversity. Biological Conservation 61:1-10.
24. Fargione, J., C. S. Brown, and D. Tilman. 2003. Community assembly and invasion: an experimental test of neutral versus niche processes. Proceedings of the National Academy of Sciences of the USA 100:8916-8920.
25. Fargione, J. E., andD. Tilman. 2005. Diversity decreases invasion via both sampling and complementarity effects. Ecology Letters 8:604-611.
26. Flynn, D. F. B., N. Mirotchnick, M. Jain, M. I. Palmer, and S. Naeem. 2011. Functional and phylogenetic diversity as predictors of biodiversity- ecosystem-function relationships. Ecology 92:1573-1581.
27. Forest, F., R. Grenyer, M. Rouget, T. J. Davies, R. M. Cowling, D. P. Faith, A. Balmford, et al. 2007. Preserving the evolutionary potential of floras in biodiversity hotspots. Nature 445:757-760.
28. Fridley, J. D., and D. F. Sax. 2014. The imbalance of nature: revisiting a Darwinian framework for invasion biology. Global Ecology and Biogeorgraphy 23:1157-1166.
29. Fridley, J. D., J. J. Stachowicz, S. Naeem, D. F. Sax, E. W. Seabloom, M. D. Smith, T. J. Stohlgren, D. Tilman, and B. Von Holle. 2007. The invasion paradox: reconciling pattern and process in species invasions. Ecology 88:3-17.
30. Gerhold, P., M. Paertel, O. Tackenberg, S. M. Hennekens, I. Bartish, J. H. J. Schaminee, A. J. F. Fergus, W. A. Ozinga, and A. Prinzing. 2011. Phylogenetically poor plant communities receive more alien species, which more easily coexist with natives. American Naturalist 177:668-680.
31. Godoy, O., N. J. B. Kraft, and J. M. Levine. 2014. Phylogenetic relatedness and the determinants of competitive outcomes. Ecology Letters 17:836-844.
32. Griffin, J. N., V. Mendez, A. F. Johnson, S. R. Jenkins, and A. Foggo. 2009. Functional diversity predicts overyielding effect of species combination on primary productivity. Oikos 118:37-44.
33. Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696-704.
34. Huelsenbeck, J. P., and F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755.
35. Jessup, C. M., R. Kassen, S. E. Forde, B. Kerr, A. Buckling, P. B. Rainey, and B. J. M. Bohannan. 2004. Big questions, small worlds: microbial model systems in ecology. Trends in Ecology and Evolution 19:189-197.
36. Jiang, L. 2007. Negative selection effects suppress relationships between bacterial diversity and ecosystem functioning. Ecology 88: 1075-1085.
37. Jiang, L., J. Tan, and Z. Pu. 2010. An experimental test of Darwin's naturalization hypothesis. American Naturalist 175:415-423.
38. Kimbel, S. W., P. D. Cowan, M. R. Helmus, W. K. Cornwell, H. Morlon, D. D. Ackerly, S. P. Blomberg, and C. O. Webb. 2010. Picante: R tools for integrating phylogenies and ecology. Bioinformatics 26:1463-1464.
39. Lambdon, P. W., and P. E. Hulme. 2006. How strongly do interactions with closely-related native species influence plant invasions? Darwin's naturalization hypothesis assessed on Mediterranean islands. Journal of Biogeography 33:1116-1125.
40. Levine, J. M., P. B. Adler, and S. G. Yelenik. 2004. Ameta-analysis of biotic resistance to exotic plant invasions. Ecology Letters 7:975-989.
41. Levine, J. M., T. Kennedy, and S. Naeem. 2002. Neighborhood scale effects of species diversity on biological invasions and their relationship to community patterns. Pages 114-126 in M. Loreau, S. Naeem, and P. Inchausti, eds. Biodiversity and ecosystemfunctioning synthesis and perspectives. Oxford University Press, Oxford.
42. Loreau, M., and A. Hector. 2001. Partitioning selection and complementarity in biodiversity experiments. Nature 412:72-76.
43. Mack, R. N., D. Simberloff, W. M. Lonsdale, H. Evans, M. Clout, and F. A. Bazzaz. 2000. Biotic invasions: causes, epidemiology, global consequences, and control. Ecological Applications 10:689-710.
44. Martin, A. P. 2002. Phylogenetic approaches for describing and comparing the diversity of microbial communities. Applied and Environmental Microbiology 68:3673-3682.
45. Martiny, A. C., K. Treseder, and G. Pusch. 2013. Phylogenetic conservatism of functional traits in microorganisms. ISME Journal 7:830-838.
46. Matz, C., J. Boenigk, H. Arndt, and K. Jurgens. 2002. Role of bacterial phenotypic traits in selective feeding of the heterotrophic nanoflagellate Spumella sp. Aquatic Microbial Ecology 27:137-148.
47. McGill, B. J., B. J. Enquist, E. Weiher, andM. Westoby. 2006. Rebuilding community ecology from functional traits. Trends in Ecology and Evolution 21:178-185.
48. Moseman, S. M., R. Zhang, P. Y. Qian, and L. A. Levin. 2009. Diversity and functional responses of nitrogen-fixing microbes to three wetland invasions. Biological Invasions 11:225-239.
49. Mulder, C., J. E. Cohen, H. Setala, J. Bloem, and A. M. Breure. 2005. Bacterial traits, organism mass, and numerical abundance in the detrital soil food web of Dutch agricultural grasslands. Ecology Letters 8:80-90.
50. Naeem, S., and J. P. Wright. 2003. Disentangling biodiversity effects on ecosystem functioning: deriving solutions to a seemingly insurmountable problem. Ecology Letters 6:567-579.
51. Narwani, A., M. A. Alexandrou, T. H. Oakley, I. T. Carroll, and B. J. Cardinale. 2013. Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters 16:1373-1381.
52. Ordonez, A., I. J. Wright, and H. Olff. 2010. Functional differences between native and alien species: a global-scale comparison. Functional Ecology 24:1353-1361.
53. Pavoine, S., S. Ollier, and A. B. Dufour. 2005. Is the originality of a species measurable? Ecology Letters 8:579-586.
54. Petchey, O. L., and K. J. Gaston. 2006. Functional diversity: back to basics and looking forward. Ecology Letters 9:741-758.
55. Peterson, A. T., J. Soberon, and V. Sanchez-Cordero. 1999. Conservatism of ecological niches in evolutionary time. Science 285:1265-1267.
56. Posada, D. 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25:1253-1256.
57. Proches, S., J. R. U. Wilson, D. M. Richardson, and M. Rejmanek. 2008. Searching for phylogenetic pattern in biological invasions. Global Ecology and Biogeography 17:5-10.
58. Ricciardi, A., and M.Mottiar. 2006. Does Darwin's naturalization hypothesis explain fish invasions? Biological Invasions 8:1403-1407.
59. Schaefer, H., O. J. Hardy, L. Silva, T. G. Barraclough, and V. Savolainen. 2011. Testing Darwin's naturalization hypothesis in the Azores. Ecology Letters 14:389-396.
60. Shaw, R. G., and T. Mitchell-Olds. 1993. ANOVA for unbalanced data: an overview. Ecology 74:1638-1645.
61. Srivastava, D. S., M. W. Cadotte, A. A. M. MacDonald, R. G. Marushia, and N. Mirotchnick. 2012. Phylogenetic diversity and the functioning of ecosystems. Ecology Letters 15:637-648.
62. Stachowicz, J. J., R. B. Whitlatch, and R. W. Osman. 1999. Species diversity and invasion resistance in a marine ecosystem. Science 286:1577-1579.
63. Storey, J. D., J. E. Taylor, and D. Siegmund. 2004. Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. Journal of the Royal Statistical Society Series B (Statistical Methodology) 66:187-205.
64. Strauss, S. Y., C. O. Webb, and N. Salamin. 2006. Exotic taxa less related to native species are more invasive. Proceedings of the National Academy of Sciences of the USA 103:5841-5845.
65. Tan, J., Z. Pu, W. A. Ryberg, and L. Jiang. 2012. Species phylogenetic relatedness, priority effects, and ecosystem functioning. Ecology 93:1164-1172.
66. Tan, J., Z. Pu, W. A. Ryberg, and L. Jiang. 2015. Data from: Resident-invader phylogenetic relatedness, not resident phylogenetic diversity, controls community invasibility. American Naturalist, Dryad Digital Repository: doi:10.5061 /dryad.9sj18.
67. Tilman, D. 1997. Community invasibility, recruitment limitation, and grassland biodiversity. Ecology 78:81-92.
68. Tingley, R., B. L. Phillips, and R. Shine. 2011. Establishment success of introduced amphibians increases in the presence of congeneric species. American Naturalist 177:382-388.
69. Vaz-Pinto, F., C. Olabarria, and F. Arenas. 2012. Propagule pressure and functional diversity: interactive effects on a macroalgal invasion process. Marine Ecology Progress Series 471:51-60.
70. Violle,C.,D.R.Nemergut, Z. Pu, and L. Jiang. 2011. Phylogenetic limiting similarity and competitive exclusion. Ecology Letters 14:782-787.
71. Vitousek, P. M., C. M. Dantonio, L. L. Loope, and R. Westbrooks. 1996. Biological invasions as global environmental change. American Scientist 84:468-478.
72. Wardle, D. A. 2001. Experimental demonstration that plant diversity reduces invasibility-evidence of a biological mechanism or a consequence of sampling effect? Oikos 95:161-170.
73. Wardle, D. A., K. I. Bonner, and K. S. Nicholson. 1997. Biodiversity and plant litter: experimental evidence which does not support the view that enhanced species richness improves ecosystem function. Oikos 79:247-258.