A One-Step, Real-Time Reverse Transcription Loopmediated Isothermal Amplification Assay to Detect Potato Virus Y

American Journal of Potato Research

Volumn 92, Issue 3, 2015, Pages 303-311

  Przewodowska, Agnieszka ^a   Zacharzewska, Bogumiła ^a   Chołuj, Joanna ^a   Treder, Krzysztof ^a  

^a PLANT BREEDING AND ACCLIMATIZATION INSTITUTE NATIONAL RESEARCH INSTITUTE   (Poland)

Author keywords

Potato; Potato virus Y; Reverse transcription loop mediated isothermal amplification assay

Indexed keywords

POTATO VIRUS Y; SOLANUM TUBEROSUM;

EID: 84931563015     PISSN: 1099209X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12230-015-9430-3     Document Type: Article

References (35)

1. Ahmadi, S., M.A. Almasi, F. Fatehi, P.C. Struik, and A. Moradi. 2013. Visual detection of potato leafroll virus by one-step reverse transcription loop-mediated isothermal amplification of DNA with hydroxynaphthol blue dye. Journal of Phytopathology 161: 120–124.
2. Boonham, N., R. Glover, J. Tomlinson, and R. Mumford. 2008. Exploiting generic platform technologies for the detection and identification of plant pathogens. European Journal of Plant Pathology 121: 355–363.
3. Crosslin, J.M. 2012. PVY: an old enemy and a continuing challenge. American Journal of Potato Research 90: 2–6.
4. Crosslin, J.M., and L.L. Hamlin. 2011. Standardized RT-PCR conditions for detection and identification of eleven viruses of potato and potato spindle tuber viroid. American Journal of Potato Research 88: 333–338.
5. Danks, C., and I. Barker. 2000. On-site detection of plant pathogens using lateral-flow devices. EPPO Bulletin 30: 421–426.
6. De Boer, S.H., and M.M. Lopez. 2012. New grower-friendly methods for plant pathogen monitoring. Annual Review of Phytopathology 50: 197–218.
7. Goto, M., H. Hayashidani, K. Takatori, and Y.H. Kudo. 2007. Rapid detection of enterotoxigenic Staphylococcus aureus harbouring genes for four classical enterotoxins, SEA, SEB, SEC and SED, by loop-mediatedisothermal amplification assay. Letters in Applied Microbiology 45: 100–107.
8. Goto, M., E. Honda, A. Ogura, A. Nomoto, and K.-I. Hanaki. 2009. Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 46: 167–172.
9. Gray, S., S. De Boer, J. Lorenzen, A. Karasev, J. Whitworth, P. Nolte, R. Singh, A. Boucher, and H. Xu. 2010. Potato virus Y: an evolving concern for potato crops in the United States and Canada. Plant Disease 94: 1384–1397.
10. Hasiów-Jaroszewska, B., and N. Borodynko. 2013. Detection of Pepino mosaic virus isolates from tomato by one-step reverse transcription loop-mediated isothermal amplification. Archives of Virology 158: 2153–2156.
11. Hill, S.A., and E.A. Jackson. 1984. An investigation of thereliability of ELISA as a practical test for detecting potatoleaf roll virus and potato virus Y in tubers. Plant Pathology 33: 21–26.
12. Ju, H. 2011. Simple and rapid detection of potato leafroll virus by reverse transcription loop-mediated isothermal amplification. Plant Pathology Journal 27: 385–389.
13. Kaliciak, A., and J. Syller. 2009. New hosts of potato virus Y (PVY) among common wild plants in Europe. European Journal of Plant Pathology 124: 707–713.
14. Kaneko, H., T. Kawana, E. Fukushima, and T. Suzutani. 2007. Tolerance of loop-mediatedisothermal amplification to a culture mediumand biological substances. Journal of Biochemical and Biophysical Methods 70: 499–501.
15. Kostiw, M., and E. Trojanowska. 2011. Impact of feeding time on PVYN and PVYNTN transmission by Myzus Persicae (SULZ.). Journal of Plant Protection Research 51: 429–434.
16. Mori, Y., K. Nagamine, N. Tomita, and T. Notomi. 2001. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochemical and Biophysical Research Communications 289: 150–154.
17. Nagamine, K., T. Hase, and T. Notomi. 2002. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Molecular and Cellular Probes 16: 223–229.
18. Nie, X. 2005. Reverse transcription loop-mediated isothermal amplification of DNA for detection of potato virus Y. Plant Disease 89: 605–610.
19. Nie, X., M. Singh, Y. Pelletier, and D. McLaren. 2012. Recent advances on potato virus Y research in Canada. American Journal of Potato Research 90: 14–20.
20. Notomi, T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Research 28: 63e–63.
21. Quenouille, J., N. Vassilakos, and B. Moury. 2013. Potato virus Y: a major crop pathogen that has provided major insights into the evolution of viral pathogenicity. Molecular Plant Pathology 14: 439–452.
22. Scholthof, K.-B.G., S. Adkins, H. Czosnek, P. Palukaitis, E. Jacquot, T. Hohn, B. Hohn, K. Saunders, T. Candresse, P. Ahlquist, C. Hemenway, and G.D. Foster. 2011. Top 10 plant viruses in molecular plant pathology. Molecular Plant Pathology 12: 938–954.
23. Shen, W., D. Tuo, P. Yan, X. Li, and P. Zhou. 2014. Detection of Papaya leaf distortion mosaic virus by reverse-transcription loop-mediated isothermal amplification. Journal of Virological Methods 195: 174–179.
24. Singh, R.P., J.P.T. Valkonen, S.M. Gray, N. Boonham, R.A.C. Jones, C. Kerlan, and J. Schubert. 2008. Discussion paper: the naming of potato virus Y strains infecting potato. Archives of Virology 153: 1–13.
25. Singh, M., R.P. Singh, M.S. Fageria, X. Nie, R. Coffin, and G. Hawkins. 2012. Optimization of a real-time RT-PCR assay and its comparison with ELISA, conventional RT-PCR and the grow-out test for large scale diagnosis of potato virus Y in dormant potato tubers. American Journal of Potato Research 90: 43–50.
26. Tomita, N., Y. Mori, H. Kanda, and T. Notomi. 2008. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nature Protocols 3: 877–882.
27. Tomlinson, J.A., S. Ostoja-Starzewska, I.P. Adams, D.W. Miano, P. Abidrabo, Z. Kinyua, T. Alicai, M.J. Dickinson, D. Peters, N. Boonham, and J. Smith. 2013. Loop-mediated isothermal amplification for rapid detection of the causal agents of cassava brown streak disease. Journal of Virological Methods 191: 148–154.
28. Varga, A., and D. James. 2006. Use of reverse transcription loop-mediated isothermal amplification for the detection of Plum pox virus. Journal of Virological Methods 138: 184–190.
29. Verbeek, M., P.G.M. Piron, A.M. Dullemans, C. Cuperus, and R.A.A. Van Der Vlugt. 2010. Determination of aphid transmission efficiencies for N, NTN and Wilga strains of potato virus Y. Annals of Applied Biology 156: 39–49.
30. Wang, Z., Q. Gu, H. Sun, H. Li, B. Sun, X. Liang, Y. Yuan, R. Liu, and Y. Shi. 2014. One-step reverse transcription loop mediated isothermal amplification assay for sensitive and rapid detection of Cucurbit chlorotic yellows virus. Journal of Virological Methods 195: 63–66.
31. Wei, Q.-W., C. Yu, S.-Y. Zhang, C.-Y. Yang, K. Miriam, W.-N. Zhang, D.-L. Dou, and X.-R. Tao. 2012. One-step detection of Bean pod mottle virus in soybean seeds by the reverse-transcription loop-mediated isothermal amplification. Virology Journal 9: 187.
32. Wróbel, S., and A. Wąsik. 2013. Seed potato production in Poland. American Journal of Potato Research 3: 260–268.
33. Zacharzewska, B., A. Przewodowska, and K. Treder. 2014. The adaptation of silica capture RT-PCR for the detection of potato virus Y. American Journal of Potato Research. doi:10.1007/s12230-014-9383-y.
34. Zahn, V., J. Dahle, and K.H. Pastrik. 2010. Visual inspection of potato seedlings in routine virus diagnosis: validation of a rating method. EPPO Bulletin 40: 429–434.
35. Zhao, L., J. Cheng, X. Hao, X. Tian, and Y. Wu. 2012. Rapid detection of tobacco viruses by reverse transcription loop-mediated isothermal amplification. Archives of Virology 157: 2291–2298.