Potato virus Y: A major crop pathogen that has provided major insights into the evolution of viral pathogenicity

Molecular Plant Pathology

Volumn 14, Issue 5, 2013, Pages 439-452

  Quenouille, Julie ^a,b   Vassilakos, Nikon ^c   Moury, Benoît ^a  

^a INRA   (France)

^b Researches Center of Avignon   (France)

^c BENAKI PHYTOPATHOLOGICAL INSTITUTE   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ARTICLE; CROP; EVOLUTION; GENETIC VARIABILITY; GENETICS; HOST PATHOGEN INTERACTION; METABOLISM; PATHOGENICITY; POTYVIRUS; VIROLOGY;

BIOLOGICAL EVOLUTION; CROPS, AGRICULTURAL; GENETIC VARIATION; HOST-PATHOGEN INTERACTIONS; POTYVIRUS; VIRAL PROTEINS;

APHIDIDAE; LYCOPERSICON ESCULENTUM; NICOTIANA TABACUM; POTATO VIRUS Y; POTYVIRIDAE; POTYVIRUS; SOLANUM TUBEROSUM;

EID: 84877056072     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/mpp.12024     Document Type: Article

References (154)

1. Abdul-Razzak, A., Guiraud, T., Peypelut, M., Walter, J., Houvenaghel, C., Candresse, T., Le Gall, O. and German-Retana, S. (2009) Involvement of the cylindrical inclusion (CI) protein in the overcoming of an eIF4E-mediated resistance against Lettuce mosaic potyvirus. Mol. Plant Pathol. 10, 109-113.
2. Acosta-Leal, R. and Xiong, Z. (2008) Complementary functions of two recessive R-genes determine resistance durability of tobacco Virgin A Mutant (VAM) to Potato virus Y. Virology, 379, 275-283.
3. Ala-Poikela, M., Goytia, E., Haikonen, T., Rajamäki, M.L. and Valkonen, J.P.T. (2011) Helper component proteinase of the genus potyvirus is an interaction partner of translation initiation factors eIF(iso)4E and eIF4E and contains a 4E binding motif. J. Virol. 85, 6784-6794.
4. Andersen, K. and Johansen, I. (1998) A single conserved amino acid in the coat protein gene of pea seed-borne mosaic potyvirus modulates the ability of the virus to move systemically in Chenopodium quinoa. Virology, 241, 304-311.
5. d'Aquino, L., Dalmay, T., Burgyán, J., Ragozzino, A. and Scala, F. (1995) Host range and sequence analysis of an isolate of Potato virus Y inducing veinal necrosis in pepper. Plant Dis. 79, 1046-1050.
6. Aramburu, J., Galipienso, L. and Matas, M. (2006) Characterization of Potato virus Y isolates from tomato crops in northeast Spain. Eur. J. Plant Pathol. 115, 247-258.
7. Atreya, C., Raccah, B. and Pirone, T. (1990) A point mutation in the coat protein abolishes aphid transmissibility of a potyvirus. Virology, 178, 161-165.
8. Atreya, P.L., Lopez-Moya, J.J., Chu, M., Atreya, C.D. and Pirone, T.P. (1995) Mutational analysis of the coat protein N-terminal amino acids involved in potyvirus transmission by aphids. J. Gen. Virol. 76, 265-270.
9. 3 resistance in pepper. Mol. Plant-Microbe Interact. 19, 557-563.
10. Barker, H. and Harrison, B.D. (1984) Expression of genes for resistance to Potato virus Y in potato plants and protoplasts. Ann. Appl. Biol. 105, 539-545.
11. Barreda, V.D., Palazzesi, L., Tellería, M.C., Katinas, L., Crisci, J.V., Bremer, K., Passalia, M.G., Corsolini, R., Rodríguez Brizuela, R. and Bechis, F. (2010) Eocene Patagonia fossils of the daisy family. Science, 329, 1621.
12. Beczner, L., Horváth, J., Romhányi, I. and Förster, H. (1984) Studies on the etiology of tuber necrotic ringspot disease in potato. Potato Res. 27, 339-352.
13. Ben Khalifa, M., Simon, V., Marrakchi, M., Fakhfakh, H. and Moury, B. (2009) Contribution of host plant resistance and geographic distance to the structure of Potato virus Y (PVY) populations in pepper in northern Tunisia. Plant Pathol. 58, 763-772.
14. Bendahmane, A., Kanyuka, K. and Baulcombe, D.C. (1999) The Rx gene from potato controls separate virus resistance and cell death responses. Plant Cell, 11, 781-791.
15. Ben Khalifa, M., Simon, V., Fakhfakh, H. and Moury, B. (2012) Tunisian Potato virus Y isolates with unnecessary pathogenicity towards pepper: support for the matching allele model in eIF4E resistance-potyvirus interactions. Plant Pathol. 61, 441-447.
16. Bhat, A.I., Varma, A., Pappu, H.R., Rajamannar, M., Jain, R.K. and Praveen, S. (1999) Characterization of a potyvirus from eggplant (Solanum melongena) as a strain of potato virus Y by N-terminal serology and sequence relationships. Plant Pathol. 48, 648-654.
17. Blanc, S., López-Moya, J.J., Wang, R., García-Lampasona, S., Thornbury, D.W. and Pirone, T.P. (1997) A specific interaction between coat protein and helper component correlates with aphid transmission of a potyvirus. Virology, 231, 141-147.
18. Blanc, S., Ammar, E.D., Garcia-Lampasona, S., Dolja, V.V., Llave, C., Baker, J. and Pirone, T.P. (1998) Mutations in the potyvirus helper component protein: effects on interactions with virions and aphid stylets. J. Gen. Virol. 79, 3119-3122.
19. Blanco-Urgoiti, B., Sanchez, F., Perez de san Roman, C., Dopazo, J. and Ponz, F. (1998) PVY-C isolates are a homogeneous pathotype but two different genetic strains. J. Gen. Virol. 79, 2037-2042.
20. Brantley, J.D. and Hunt, A.G. (1993) The N-terminal protein of the polyprotein encoded by the potyvirus tobacco vein mottle virus is an RNA-binding protein. J. Gen. Virol. 74, 1157-1162.
21. Bravo-Almonacid, F., Rudoy, V., Welin, B., Segretin, M.E., Bedogni, M.C., Stolowicz, F., Criscuolo, M., Foti, M., Gomez, M., López, M., Serino, G., Cabral, S., Dos Santos, C., Huarte, M. and Mentaberry, A. (2012) Field testing, gene flow assessment and pre-commercial studies on transgenic Solanum tuberosum spp. tuberosum (cv. Spunta) selected for PVY resistance in Argentina. Transgenic Res. 21, 967-982.
22. Brigneti, G., Voinnet, O., Li, W.X., Ji, L.H., Ding, S.W. and Baulcombe, D.C. (1998) Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J. 17, 6739-6746.
23. Caranta, C., Lefebvre, V. and Palloix, A. (1997) Polygenic resistance of pepper to potyviruses consists of a combination of isolate-specific and broad-spectrum quantitative trait loci. Mol. Plant-Microbe Interact. 10, 872-878.
24. Carrington, J.C. and Dougherty, W.G. (1987) Small nuclear inclusion protein encoded by plant potyvirus genome is a protease. J. Virol. 61, 2540-2548.
25. Carrington, J.C. and Freed, D.D. (1990) Cap-independent enhancement of translation by a plant potyvirus 5' nontranslated region. J. Virol. 64, 1590-1597.
26. Carrington, J.C., Jensen, P.E. and Schaad, M.C. (1998) Genetic evidence for an essential role for potyvirus CI protein in cell-to-cell movement. Plant J. 14, 393-400.
27. Cavatorta, J.R., Savage, A.E., Yeam, I., Gray, S.M. and Jahn, M.M. (2008) Positive Darwinian selection at single amino acid sites conferring plant virus resistance. J. Mol. Evol. 67, 551-559.
28. de Cedrón, M.G., Osaba, L., Lopez, L.L. and García, A.J. (2006) Genetic analysis of the function of the plum pox virus CI RNA helicase in virus movement. Virus Res. 116, 136-145.
29. tbr, for hypersensitivity to Potato virus Y from Solanum tuberosum maps to chromosome IV. Theor. Appl. Genet. 104, 669-674.
30. Charron, C., Nicolaï, M., Gallois, J., Robaglia, C., Moury, B., Palloix, A. and Caranta, C. (2008) Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg. Plant J. 54, 56-68.
31. Chu, M., Lopez-Moya, J.J., Llave-Correas, C. and Pirone, T.P. (1997) Two separate regions in the genome of the Tobacco etch virus contain determinants of the wilting response of Tabasco pepper. Mol. Plant-Microbe Interact. 10, 472-480.
32. Chung, B.Y.W., Miller, W.A., Atkins, J.F. and Firth, A.E. (2008) An overlapping essential gene in the Potyviridae. Proc. Natl. Acad. Sci. USA, 105, 5897-5902.
33. Cockerham, G. (1943) The reactions of potato varieties to viruses X, A, B and C. Ann. Appl. Biol. 30, 338-344.
34. Cockerham, G. (1970) Genetical studies on resistance to potato viruses X and Y. Heredity, 25, 309-348.
35. Cuevas, J.M., Delaunay, A., Visser, J.C., Bellstedt, D.U., Jacquot, E. and Elena, S.F. (2012) Phylogeography and molecular evolution of Potato virus Y. PLoS ONE, 7, e37853.
36. Cui, X., Wei, T., Chowda-Reddy, R.V., Sun, G. and Wang, A. (2010) The Tobacco etch virus P3 protein forms mobile inclusions via the early secretory pathway and traffics along actin microfilaments. Virology, 397, 56-63.
37. De Bokx, J.A. and Huttinga, H. (1981) Potato virus Y. CMI/AAB Descriptions of Plant Viruses, 242. Available at http://www.dpvweb.net/dpv/showdpv.php?dpvno=242.
38. Deom, C.M., Murphy, J.F. and Paguio, O.R. (1997) Resistance to tobacco etch virus in Capsicum annuum: inhibition of virus RNA accumulation. Mol. Plant-Microbe Interact. 7, 917-921.
39. Dogimont, C., Palloix, A., Daubèze, A.M., Marchoux, G., Gebre Selassie, K. and Pochard, E. (1996) Genetic analysis of broad spectrum resistance to potyviruses using doubled haploid lines of pepper (Capsicum annuum L.). Euphytica, 88, 231-239.
40. Dolja, V.V., Haldeman-Cahill, R., Montgomery, A.E., Vandenbosch, K.A. and Carrington, J.C. (1995) Capsid protein determinants involved in cell-to-cell and long distance movement of Tobacco etch potyvirus. Virology, 206, 1007-1016.
41. Draper, M.D., Pasche, J.S. and Gudmestad, N.C. (2002) Factors influencing PVY development in three potato cultivars. Am. J. Potato Res. 79, 155-165.
42. Dujovny, G., Usugi, T., Shohara, K. and Lenardon, S.L. (1998) Characterization of a new Potyvirus infecting sunflower in Argentina. Plant Dis. 82, 470-474.
43. Dullemans, A.M., Cuperus, C., Verbeek, M. and van der Vlugt, R.A.A. (2011) Complete nucleotide sequence of a potato isolate of strain group C of Potato virus Y from 1938. Arch. Virol. 156, 473-477.
44. Duprat, A., Caranta, C., Revers, F., Menand, B., Browning, K.S. and Robaglia, C. (2002) The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses. Plant J. 32, 927-934.
45. Edwardson, J.R. (1992) Inclusion bodies. Arch. Virol. Suppl. 5, 25-30.
46. Edwardson, J.R. and Christie, R.G. (1997) Potyviruses. In: Florida Agricultural Experiment Station Monograph Series 18-II - Viruses Infecting Pepper and Other Solanaceous Crops (University of Florida, ed.), pp. 424-524. Gainesville, FL: University of Florida.
47. Eiamtanasate, S., Juricek, M. and Yap, Y.K. (2007) C-terminal hydrophobic region leads PRSV P3 protein to endoplasmic reticulum. Virus Genes, 35, 611-617.
48. Elena, S.F. and Rodrigo, G. (2013) Towards an integrated molecular model of plant-virus interactions. Curr. Opin. Virol. 2, 719-724.
49. Fabre, F., Montarry, J., Coville, J., Senoussi, R., Simon, V. and Moury, B. (2012) Modelling the evolutionary dynamics of viruses within their hosts: a case study using high-throughput sequencing. PLoS Pathog. 8, e1002654.
50. Fanigliulo, A., Comes, S., Pacella, R., Harrach, B., Martin, D.P. and Crescenzi, A. (2005) Characterisation of Potato virus Y nnp strain inducing veinal necrosis in pepper: a naturally occurring recombinant strain of PVY. Arch. Virol. 150, 709-720.
51. Faurez, F., Baldwin, T., Tribodet, M. and Jacquot, E. (2012) Identification of new Potato virus Y (PVY) molecular determinants for the induction of vein necrosis in tobacco. Mol. Plant Pathol. 13, 948-959.
52. Fereres, A., Perez, P., Gemeno, C. and Ponz, F. (1993) Transmission of Spanish pepper-PVY and potato-PVY isolates by aphid (Homoptera, Aphididae) vectors-epidemiological implications. Environ. Entomol. 22, 1260-1265.
53. Fernández, A., Lain, S. and García, J.A. (1995) RNA helicase activity of the plum pox potyvirus CI protein expressed in Escherichia coli. Mapping of an RNA binding domain. Nucleic Acids Res. 23, 1327-1332.
54. Fernández, A., Guo, H.S., Sáenz, P., Simón-Buela, L., de Cedrón, M.G. and García, J.A. (1997) The motif V of plum pox potyvirus CI RNA helicase is involved in NTP hydrolysis and is essential for virus RNA replication. Nucleic Acids Res. 25, 4474-4480.
55. Gallois, J.-L., Charron, C., Sánchez, F., Pagny, G., Houvenaghel, M.-C., Moretti, A., Ponz, F., Revers, F., Caranta, C. and German-Retana, S. (2010) Single amino acid changes in the turnip mosaic virus viral genome-linked protein (VPg) confer virulence towards Arabidopsis thaliana mutants knocked out for eukaryotic initiation factors eIF(iso)4E and eIF(iso)4G. J. Gen. Virol. 91, 288-293.
56. Gebre Selassie, K., Marchoux, G., Delecolle, B. and Pochard, E. (1985) Variabilité naturelle des souches du virus Y de la pomme de terre dans les cultures de piment du sud-est de la France. Caractérisation et classification en pathotypes. Agronomie, 5, 621-630.
57. Gibbs, A. and Ohshima, K. (2010) Potyviruses and the digital revolution. Ann. Rev. Phytopathol. 48, 205-223.
58. Gibbs, A.J., Ohshima, K., Phillips, M.J. and Gibbs, M.J. (2008) The prehistory of potyviruses: their initial radiation was during the dawn of agriculture. PLoS ONE, 3, e2523.
59. Govier, D.A. and Kassanis, B. (1974) A virus-induced component of plant sap needed when aphids acquire potato virus Y from purified preparations. Virology, 61, 420-426.
60. Govier, D.A., Kassanis, B. and Pirone, T.P. (1977) Partial purification and characterization of Potato virus Y helper component. Virology, 78, 306-314.
61. Hämäläinen, J.H., Watanabe, K.N., Valkonen, J.P.T., Arihara, A., Plaisted, R.L., Pehu, E., Miller, L. and Slack, S.A. (1997) Mapping and marker-assisted selection for a gene for extreme resistance to potato virus Y. Theor. Appl. Genet. 94, 192-197.
62. Hernández, G. and Vazquez-Pianzola, P. (2005) Functional diversity of the eukaryotic translation initiation factors belonging to eIF4 families. Mech. Dev. 122, 865-876.
63. Hong, Y. and Hunt, A.G. (1996) RNA polymerase activity catalyzed by potyvirus-encoded RNA-dependent RNA polymerase. Virology, 226, 146-151.
64. Hu, X., Karasev, A.V., Brown, C.J. and Lorenzen, J.H. (2009) Sequence characteristics of Potato virus Y recombinants. J. Gen. Virol. 90, 3033-3041.
65. Ibaba, J.D. and Gubba, A. (2011) Diversity of Potato virus Y isolates infecting solanaceous vegetables in the province of KwaZulu-Natal in the Republic of South Africa. Crop Prot. 30, 1404-1408.
66. Janzac, B., Fabre, M.F., Palloix, A. and Moury, B. (2009) Phenotype and spectrum of action of the Pvr4 resistance in pepper against potyviruses, and selection for virulent variants. Plant Pathol. 58, 443-449.
67. Janzac, B., Montarry, J., Palloix, A., Navaud, O. and Moury, B. (2010) A point mutation in the polymerase of Potato virus Y confers virulence toward the Pvr4 resistance of pepper and a high competitiveness cost in susceptible cultivar. Mol. Plant-Microbe Interact. 23, 823-830.
68. Jiang, J. and Laliberte, J.-F. (2011) The genome-linked protein VPg of plant viruses-a protein with many partners. Curr. Opin. Virol. 1, 347-354.
69. Jin, Y., Ma, D., Dong, J., Jin, J., Li, D., Deng, C. and Wang, T. (2007) HC-Pro protein of Potato Virus Y can interact with three Arabidopsis 20S proteasome subunits inplanta. J. Virol. 81, 12881-12888.
70. Johansen, I.E., Lund, O.S., Hjulsager, C.K. and Laursen, J. (2001) Recessive resistance in Pisum sativum and potyvirus pathotype resolved in a gene-for-cistron correspondence between host and virus. J. Virol. 75, 6609-6614.
71. Jones, R.A.C. (1990) Strain group specific and virus specific hypersensitive reactions to infection with potyviruses in potato cultivars. Ann. Appl. Biol. 117, 93-105.
72. Kahn, R.P. and Monroe, R.L. (1963) Detection of the tobacco veinal necrosis strain of potato virus Y in Solanum cardenasii and S. andigenum introduced into the United States. Phytopathology, 53, 1356-1359.
73. Kasschau, K.D. and Carrington, J.C. (2001) Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro. Virology, 285, 71-81.
74. Kehoe, M.A. and Jones, R.A.C. (2011) A proposal to help resolve the disagreement between naming of Potato virus Y strain groups defined by resistance phenotypes and those defined by sequencing. Arch. Virol. 156, 2273-2278.
75. Kerlan, C. (2006) Potato virus Y. AAB/CMI Descriptions of Plant Viruses 414. Available at http://www.dpvweb.net/dpv/showdpv.php?dpvno=414.
76. Kyle, M.M. and Palloix, A. (1997) Proposed revision of nomenclature for potyvirus resistance genes in Capsicum. Euphytica, 97, 183-188.
77. 2 on the development of isolates capable of overcoming alleles 0 and 2. Eur. J. Plant Pathol. 130, 259-269.
78. Lakatos, L., Csorba, T., Pantaleo, V., Chapman, E.J., Carrington, J.C., Liu, Y., P., Dolja, V.V., Calvino, L.F., Lopez-Moya, J.J. and Burgyan, J. (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J. 25, 2768-2780.
79. Latorre, B.A., Flores, V. and Marholz, G. (1984) Effect of potato virus Y on growth, yield, and chemical composition of flue-cured tobacco in Chile. Plant Dis. 68, 884-886.
80. Le Romancer, M., Kerlan, C. and Nedellec, M. (1994) Biological characterization of various geographical isolates of Potato virus Y inducing superficial necrosis on potato tubers. Plant Pathol. 43, 138-144.
81. Lellis, A.D., Kasschau, K.D., Whitham, S.A. and Carrington, J.C. (2002) Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection. Curr. Biol. 12, 1046-1051.
82. Léonard, S., Plante, D., Wittmann, S., Daigneault, N., Fortin, M.G. and Laliberte, J.-F. (2000) Complex formation between potyvirus VPg and translation eukaryotic initiation factor 4E correlates with virus infectivity. J. Virol. 74, 7730-7737.
83. Li, R., Gao, S., Hernandez, A.G., Wechter, W.P., Fei, Z. and Ling, K.S. (2012) Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation. PLoS ONE, 7, e37127.
84. Llave, C., Kasschau, K.D. and Carrington, J.C. (2000) Virus-encoded suppressor of posttranscriptional gene silencing targets a maintenance step in the silencing pathway. Proc. Natl. Acad. Sci. USA, 97, 13401-13406.
85. López-Moya, J.J., Wang, R.Y. and Pirone, T.P. (1999) Context of the coat protein DAG motif affects potyvirus transmissibility by aphids. J. Gen. Virol. 80, 3281-3288.
86. Luis-Arteaga, M. and Gil-Ortega, R. (1986) Biological characterization of PVY as isolated from pepper in Spain. In: VI Meeting on Capsicum and Eggplant, Zaragoza, Spain, October 21-24, 183-188.
87. Margaritopoulos, J.T., Dovas, C.I., Gounaris, J., Skouras, P.J., Kanavaki, O.M., Katis, N.I. and Tsitsipis, J.A. (2010) Molecular analysis of the coat protein of Potato virus Y isolates in Greece suggests multiple introduction from different genetic pools. J. Phytopathol. 158, 73-80.
88. Mascia, T., Finetti-Sialer, M.M., Cillo, F. and Gallitelli, D. (2010) Biological and molecular characterization of a recombinant isolate of Potato virus Y associated with a tomato necrotic disease occurring in Italy. J. Plant Pathol. 92, 131-138.
89. Masuta, C., Nishimura, M., Morishita, H. and Hataya, T. (1999) A single amino acid change in viral genome-associated protein of Potato virus Y correlates with resistance breaking in 'Virgin A Mutant' tobacco. Phytopathology, 89, 118-123.
90. Merits, A., Guo, D.Y. and Saarma, M. (1998) VPg, coat protein and five non-structural proteins of potato A potyvirus bind RNA in a sequence-unspecific manner. J. Gen. Virol. 79, 3123-3127.
91. Merits, A., Guo, D., Jarvekulg, L. and Saarma, M. (1999) Biochemical and genetic evidence for interactions between potato A potyvirus-encoded proteins P1 and P3 and proteins of the putative replicative complex. Virology, 263, 15-22.
92. Mestre, P., Brigneti, G. and Baulcombe, D.C. (2000) An Ry-mediated resistance response in potato requires the intact active site of the NIa proteinase from potato virus Y. Plant J. 23, 653-661.
93. Mestre, P., Brigneti, G., Durrant, M.C. and Baulcombe, D.C. (2003) Potato virus Y NIa protease activity is not sufficient for elicitation of Ry-mediated disease resistance in potato. Plant J. 36, 755-761.
94. Montarry, J., Doumayrou, J., Simon, V. and Moury, B. (2011) Genetic background matters: a plant-virus gene-for-gene interaction is strongly influenced by genetic contexts. Mol. Plant Pathol. 12, 911-920.
95. Montarry, J., Cartier, E., Jacquemond, M., Palloix, A. and Moury, B. (2012) Virus adaptation to quantitative plant resistance: erosion or breakdown? J. Evol. Biol. 25, 2242-2252.
96. Moury, B. (2010) A new lineage sheds light on the evolutionary history of Potato virus Y. Mol. Plant Pathol. 11, 161-168.
97. Moury, B. and Simon, V. (2011) dN/dS-based methods detect positive selection linked to trade-offs between different fitness traits in the coat protein of Potato virus Y. Mol. Biol. Evol. 28, 2707-2717.
98. Moury, B. and Verdin, E. (2012) Viruses of pepper crops in the Mediterranean basin: a remarkable stasis. Adv. Virus Res. 84, 127-162.
99. Moury, B., Morel, C., Johansen, E. and Jacquemond, M. (2002) Evidence for diversifying selection in Potato virus Y and in the coat protein of other potyviruses. J. Gen. Virol. 83, 2563-2573.
100. Moury, B., Morel, C., Johansen, E., Guilbaud, L., Souche, S., Ayme, V., Caranta, C., Palloix, A. and Jacquemond, M. (2004) Mutations in Potato virus Y genome-linked protein determine virulence towards recessive resistances in Capsicum annuum and Lycopersicon hirsutum. Mol. Plant-Microbe Interact. 17, 322-329.
101. Moury, B., Desbiez, C., Jacquemond, M. and Lecoq, H. (2006) Genetic diversity of plant virus populations: towards hypothesis testing in molecular epidemiology. Adv. Virus Res. 67, 49-87.
102. Moury, B., Caromel, B., Johansen, E., Simon, V., Chauvin, L., Jacquot, E., Kerlan, C. and Lefebvre, V. (2011) The helper component proteinase cistron of Potato virus Y induces hypersensitivity and resistance in potato genotypes carrying dominant resistance genes on chromosome IV. Mol. Plant-Microbe Interact. 24, 787-797.
103. Murphy, J.F., Rhoads, R.E., Hunt, A.G. and Shaw, J.G. (1990) The VPg of tobacco etch virus RNA is the 49-kDa proteinase or the N-terminal 24-kDa part of the proteinase. Virology, 178, 285-288.
104. Murphy, J.F., Rychlik, W., Rhoads, R.E., Hunt, A.G. and Shaw, J.G. (1991) A tyrosine residue in the small nuclear inclusion protein of Tobacco vein mottling virus links the VPg to the viral RNA. J. Virol. 65, 511-513.
105. N by mutation rather than recombination. Vir. Genes, 26, 39-47.
106. Nobrega, N.R. and Silberschmidt, K. (1944) Sobre una provavel variante do virus 'Y' da batatinha que tem a peculiaridade de provocar necroses em plantas de fumo. Arquiv. Inst. Biol. São Paulo 15, 307-330.
107. Palloix, A., Ayme, V. and Moury, B. (2009) Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies. New Phytol. 183, 190-199.
108. Parrella, G., Ruffel, S., Moretti, A., Morel, C., Palloix, A. and Caranta, C. (2002) Recessive resistance genes against potyviruses are localized in colinear genomic regions of the tomato (Lycopersicon spp.) and pepper (Capsicum spp.) genomes. Theor. Appl. Genet. 105, 855-861.
109. Patrick, R.M. and Browning, K.S. (2012) The eIF4F and eIFiso4F complexes of plants: an evolutionary perspective. Comp. Funct. Genomics. ID287814, 12 pp.
110. Peng, Y.-H., Kadoury, D., Gal-On, A., Huet, H., Wang, Y. and Raccah, B. (1998) Mutations in the HC-Pro gene of zucchini yellow mosaic potyvirus: effects on aphid transmission and binding to purified virions. J. Gen. Virol. 79, 897-904.
111. Pirone, T.P. and Blanc, S. (1996) Helper-dependent vector transmission of plant viruses. Annu. Rev. Phytopathol. 34, 227-247.
112. Pruss, G., Ge, X., Shi, X.M., Carrington, J.C. and Vance, V.B. (1997) Plant viral synergism: the potyviral genome encodes a broad-range pathogenicity enhancer that transactivates replication of heterologous viruses. Plant Cell, 9, 859-868.
113. Quenouille, J., Montarry, J., Palloix, A. and Moury, B. (in press) Farther, slower, stronger: how the plant genetic background protects a major resistance gene from breakdown. Mol. Plant Pathol. 14, 109-118.
114. Rantalainen, K.I., Eskelin, K., Tompa, P. and Makinen, K. (2011) Structural flexibility allows the functional diversity of potyvirus genome-linked protein VPg. J. Virol. 85, 2449-2457.
115. Redondo, E., Krause-Sakate, R., Yang, S.J., Lot, H., Le Gall, O. and Candresse, T. (2001) Lettuce mosaic virus pathogenicity determinants in susceptible and tolerant lettuce cultivars map to different regions of the viral genome. Mol. Plant-Microbe Interact. 14, 804-810.
116. Restrepo-Hartwig, M.A. and Carrington, J.C. (1994) The tobacco etch potyvirus 6-kilodalton protein is membrane associated and involved in viral replication. J. Virol. 68, 2388-2397.
117. Robaglia, C. and Caranta, C. (2006) Translation initiation factors: a weak link in plant RNA virus infection. Trends Plant Sci. 11, 40-45.
118. Roberts, I.M., Wang, D., Findlay, K. and Maule, A.J. (1998) Ultrastructural and temporal observations of the potyvirus cylindrical inclusions (CIs) show that the CI protein acts transiently in aiding virus movement. Virology, 245, 173-181.
119. Rojas, M.R., Zerbini, F.M., Allison, R.F., Gilbertson, R.L. and Lucas, W.J. (1997) Capsid protein and helper component-proteinase function as potyvirus cell-to-cell movement proteins. Virology, 237, 283-295.
120. Rolland, M., Lacroix, C., Blanchard, A., Baldwin, T., Kerlan, C. and Jacquot, E. (2008) Potato virus Y (PVY): from its discovery to the latest outbreaks. Virologie, 12, 261-273.
121. Rolland, M., Kerlan, C. and Jacquot, E. (2009) The acquisition of molecular determinants involved in Potato virus Y necrosis capacity leads to fitness reduction in tobacco plants. J. Gen. Virol. 90, 244-252.
122. Romero, A., Blanco-Urgoiti, B., Soto, M., Fereres, A. and Ponz, F. (2001) Characterization of typical pepper-isolates of PVY reveals multiple pathotypes within a single genetic strain. Virus Res. 79, 71-80.
123. Ross, H. (1986) Potato breeding-problems and perspectives. J. Plant Breed, Suppl. 13, 132 pp.
124. Rubio, M., Nicolai, M., Caranta, C. and Palloix, A. (2009) Allele mining in the pepper gene pool provided new complementation effects between pvr2-eIF4E and pvr6-eIF(iso)4E alleles for resistance to pepper veinal mottle virus. J. Gen. Virol. 90, 2808-2814.
125. Ruffel, S., Dussault, M.H., Palloix, A., Moury, B., Bendahmane, A., Robaglia, C. and Caranta, C. (2002) A natural recessive resistance gene against potato virus Y in pepper corresponds to the eukaryotic initiation factor 4E (eIF4E). Plant J. 32, 1067-1075.
126. Ruffel, S., Gallois, J.L., Lesage, M.L. and Caranta, C. (2005) The recessive potyvirus resistance gene pot-1 is the tomato orthologue of the pepper pvr2-eIF4E gene. Mol. Gen. Genomics, 274, 346-353.
127. Sacristán, S. and García-Arenal, F. (2008) The evolution of virulence and pathogenicity in plant pathogen populations. Mol. Plant Pathol. 9, 369-384.
128. Sadeghi, M.S., Behjatnia, S.A.A., Masumi, M. and Izadpanah, K. (2008) Characterisation of a strain of Potato virus Y causing eggplant mosaic in southern Iran. Australas. Plant Pathol. 37, 79-86.
129. Sáenz, P., Salvador, B., Simon-Mateo, C., Kasschau, K.D., Carrington, J.C. and García, J.A. (2002) Host-specific involvement of the HC protein in the long-distance movement of potyviruses. J. Virol. 76, 1922-1931.
130. Salaman, R.N. and Le Pelley, R.H. (1930) Paracrinkle: a potato disease of the virus group. Proc. R. Soc. London, 106, 140-175.
131. Schaad, M.C., Jensen, P.E. and Carrington, J.C. (1997) Formation of plant RNA virus replication complexes on membranes: role of an endoplasmic reticulum-targeted viral protein. EMBO J. 16, 4049-4059.
132. Scholthof, K.B., Adkins, S., Czosnek, H., Palukaitis, P., Jacquot, E., Hohn, T., Hohn, B., Saunders, K., Candresse, T., Ahlquist, P., Hemenway, C. and Foster, G. (2011) Top 10 plant viruses in molecular plant pathology. Mol. Plant Pathol. 12, 938-954.
133. Schubert, J., Fomitcheva, V. and Sztangret-Wisniewska, J. (2007) Differentiation of Potato virus Y strains using improved sets of diagnostic PCR-primers. J. Virol. Methods, 140, 66-74.
134. Segundo, E., Lesemann, D.E., Martín, G., Carmona, M., Ruiz, L., Cuadrado, I.M., Velasco, L. and Janssen, D. (2007) Amaranthus leaf mottle virus: 3'-end RNA sequence proves classification as distinct virus and reveals affinities within the genus Potyvirus. Eur. J. Plant Pathol. 117, 81-87.
135. Shiboleth, Y.M., Haronsky, E., Leibman, D., Arazi, T., Wassenegger, M., Whitham, S.A., Gaba, V. and Gal-On, A. (2007) The conserved FRNK box in HC-Pro, a plant viral suppressor of gene silencing, is required for small RNA binding and mediates symptom development. J. Virol. 81, 13135-13148.
136. Singh, R.P., Valkonen, J.P.T., Gray, S.M., Boonham, N., Jones, R.A.C., Kerlan, C. and Schubert, J. (2008) Discussion paper: the naming of Potato virus Y strains infecting potato. Arch. Virol. 153, 1-13.
137. Smith, K.M. (1931) Composite nature of certain potato viruses of the mosaic group as revealed by the use of plant indicator. Proc. R. Soc. London, Ser. B: Biol. Sci. 109, 251-267.
138. Solomon-Blackburn, R.M. and Barker, H. (2001) A review of host major-gene resistance to potato viruses X, Y, A and V in potato: genes, genetics and mapped locations. Heredity, 86, 8-16.
139. sto) on chromosome XII using anther-culture-derived primary dihaploid potato lines. Theor. Appl. Genet. 111, 879-887.
140. Soumounou, Y. and Laliberté, J.-F. (1994) Nucleic-acid binding properties of the P1 protein of turnip mosaic potyvirus produced in Escherichia coli. J. Gen. Virol. 75, 2567-2573.
141. Sudarsono, Woloshuk, S.L., Xiong, Z., Hellmann, G.M., Wernsman, E.A., Weissinger, A.K. and Lommel, S.A. (1993) Nucleotide sequence of the capsid protein cistrons from six Potato virus Y (PVY) isolates infecting tobacco. Arch. Virol. 132, 161-170.
142. Tavert-Roudet, G., Abdul-Razzak, A., Doublet, B., Walter, J., Delaunay, T., German-Retana, S., Michon, T., Le Gall, O. and Candresse, T. (2012) The C terminus of lettuce mosaic potyvirus cylindrical inclusion helicase interacts with the viral VPg and with lettuce translation eukaryotic initiation factor 4E. J. Gen. Virol. 93, 184-193.
143. Tian, Y.-P. and Valkonen, J.P.T. (2013) Genetic determinants of Potato virus Y required to overcome or trigger hypersensitive resistance to PVY strain group O controlled by the gene Ny in potato. Mol. Plant-Microbe Interact. 26, 297-205.
144. Torres-Barcelo, C., Martin, S., Daros, J.-A. and Elena, S.F. (2008) From hypo- to hypersuppression: effect of amino acid substitutions on the RNA-silencing suppressor activity of the tobacco etch potyvirus HC-Pro. Genetics, 180, 1039-1049.
145. Tribodet, M., Glais, L., Kerlan, C. and Jacquot, E. (2005) Characterization of Potato virus Y (PVY) molecular determinants involved in the vein necrosis symptom induced by PVYN isolates in infected Nicotiana tabacum cv. Xanthi. J. Gen. Virol. 86, 2101-2105.
146. Van der Zaag, D.E. (1987) Yield reduction in relation to virus infection. In: Viruses of Potatoes and Seed-Potato Production (de Bokx, J.A. and van der Want, J.P.H., eds), pp. 146-150. Wageningen: Pudoc.
147. Varrelmann, M., Maiss, E., Pilot, R. and Palkovics, L. (2007) Use of pentapeptide-insertion scanning mutagenesis for functional mapping of the plum pox virus helper component proteinase suppressor of gene silencing. J. Gen. Virol. 88, 1005-1015.
148. Verchot, J. and Carrington, J.C. (1995) Evidence that the potyvirus P1 proteinase functions in trans as an accessory factor for genome amplification. J. Virol. 69, 3668-3674.
149. Verchot, J., Koonin, E.V. and Carrington, J.C. (1991) The 35-kDa protein from the N-terminus of the potyviral polyprotein functions as a 3rd virus-encoded proteinase. Virology, 185, 527-535.
150. Wei, T. and Wang, A. (2008) Biogenesis of cytoplasmic membranous vesicles for plant potyvirus replication occurs at endoplasmic reticulum exit sites in a COPI- and COPII-dependent manner. J. Virol. 82, 12252-12264.
151. Wei, T., Huang, T.-S., McNeil, J., Laliberté, J.-F., Hong, J., Nelson, R.S. and Wang, A. (2010a) Sequential recruitment of the endoplasmic reticulum and chloroplasts for plant potyvirus replication. J. Virol. 84, 799-809.
152. Wei, T., Zhang, C., Hong, J., Xiong, R., Kasschau, K.D., Zhou, X., Carrington, J.C. and Wang, A. (2010b) Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO. PLoS Pathog. 6, e1000962.
153. Wittmann, S.S., Chatel, H., Fortin, M.G. and Laliberté, J.-F. (1997) Interaction of the viral protein genome linked of turnip mosaic potyvirus with the translational eukaryotic initiation factor (iso)4E of Arabidopsis thaliana using the yeast two-hybrid system. Virology, 234, 84-92.
154. Yambao, M.L.M., Yagihashi, H., Sekiguchi, H., Sekiguchi, T., Sasaki, T., Sato, M., Atsumi, G., Takahashi, Y., Nakahara, K.S. and Uyeda, I. (2008) Point mutations in helper component protease of clover yellow vein virus are associated with the attenuation of RNA-silencing suppression activity and symptom expression in broad bean. Arch. Virol. 153, 105-115.