Reverse transcription loop-mediated isothermal amplification of DNA for detection of potato virus Y

Plant Disease

Volumn 89, Issue 6, 2005, Pages 605-610

  Nie, Xianzhou ^a  

^a FREDERICTON RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; CONCENTRATION (PROCESS); CROPS; DNA; ENZYMES; GENES; MAGNESIUM COMPOUNDS; PLANTS (BOTANY); SPECTROPHOTOMETRY;

COAT PROTEINS (CP); POTATO VIRUS Y (PVY); REVERSE TRANSCRIPTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION (RT-PCR);

VIRUSES;

ENZYMES; FARM CROPS; GENES; MAGNESIUM COMPOUNDS; NUCLEIC ACIDS; PLANTS; VIRUSES;

POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM;

EID: 18944373165     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PD-89-0605     Document Type: Article

References (18)

1. Ahloowalia, B. S. 2001. Potato from famine to global food security. ABN 073 AgBiotechNet 3:1-7
2. Clark, M. F., and Adams, A. N. 1977. Characteristics of the micro-plate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J. Gen. Virol. 34:475-483.
3. Fukuta, S., Iida, T., Mizukami, Y., Ishida, A., Ueda, J., Kanbe, M., and Ishimoto, Y. 2003. Detection of Japanese yam mosaic virus by RT-LAMP. Arch. Virol. 148:1713-1720.
4. Hadidi, A., Levy, L., and Podleckis, E. V. 1995. Polymerase chain reaction technology in plant pathology. In: Molecular Methods in Plant Pathology. R. P. Singh and U. S. Singh, eds. CRC Press, Boca Raton, FL.
5. Henson, J. M., and French, R. 1993. The polymerase chain reaction and plant disease diagnosis. Annu. Rev. Phytopathol. 31:81-109.
6. Holmes, F. O. 1929. Local lesions in tobacco mosaic. Bot. Gaz. 87:39-55.
7. Iwamoto, T., Sonobe, T., and Hayashi, K. 2003. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J. Clin. Microbiol. 41:2616-2622.
8. Mori, Y., Nagamine, K. Tomita, N., and Notomi, T. 2001. Detection of loop mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 289:150-154.
9. Nagamine, K., Hase, T., and Notomi, T. 2002. Accelerated reaction by loop mediated isothermal amplification using loop primers. Mol. Cell. Probes 16:223-229.
10. Nie, X., and Singh, R. P. 2001. A novel usage of random primers for multiplex RT-PCR detection of virus and viroid in aphids, leaves, and tubers. J. Virol. Methods 91:37-49.
11. Nie, X., and Singh, R. P. 2002. A new approach for the simultaneous differentiation of biological and geographical strains of Potato virus Y by uniplex and multiplex RT-PCR. J. Virol. Methods 104:41-54.
12. Nie, X., Singh, R. P., and Singh, M. 2004. Molecular and pathological characterization of N:O isolates of the Potato virus Y from Manitoba, Canada. Can. J. Plant Pathol. 26:573-583.
13. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N., and Hase, T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28:e63.
14. Parida, M., Posadas, G., Inoue, S., Hasebe, F., and Morita, K. 2004. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J. Clin. Microbiol. 42:257-263.
15. Singh, M., and Singh, R. P. 1996. Factors affecting detection of PVY in dormant tubers by reverse transcription polymerase chain reaction and nucleic acid spot hybridization. J. Virol. Methods 60:47-57.
16. Singh, R. P., McLaren, D. L., Nie, X., and Singh, M. 2003. Possible escape of a recombinant isolate of Potato virus Y by serological indexing and methods of its detection. Plant Dis. 87:679-685.
17. Singh, R. P., Nie, X., and Singh, M. 2000. Duplex RT-PCR: reagent concentrations at reverse transcription stage affect the PCR performance. J. Virol. Methods 86:121-129.
18. Slack, S. A., and Singh, R. P. 1998. Control of viruses affecting potatoes through seed potato certification programs. Pages 249-260 in: Plant Virus Disease Control. A. Hadidi, R. K. Khetarpal, and H. Koganezawa, eds. American Phytopathological Society Press, St. Paul, MN.