Simple and rapid detection of potato leafroll virus by reverse transcription loop-mediated isothermal amplification

Plant Pathology Journal

Volumn 27, Issue 4, 2011, Pages 385-389

  Ju, Ho Jong ^a  

^a Chonbuk National University   (South Korea)

Author keywords

Diagnosis; Loop primers; Real time; RT PCR; Virus detection

Indexed keywords

EID: 84873950892     PISSN: 15982254     EISSN: 20939280     Source Type: Journal    
DOI: 10.5423/PPJ.2011.27.4.385     Document Type: Note

References (35)

1. Ahouee, Kh. H., Habibi, M. K. and Mosahebi, G. H. 2010. Detection of potato leafroll virus isolated from potato fields in Tehran province in aphids by immunocapture reverse transcription polymerase chain reaction. Afr. J. Biotechnol. 9:2349-2352.
2. Birhman, R. K. and Hosaka, K. 2000. Production of inbred progenies of diploid potatoes using an S-locus inhibitor (Sli) gene, and their characterization. Genome 43:495-502.
3. Bostan, H. and Peker, P. K. 2009. The feasibility of tetraplex RTPCR in the determination of PVS, PLRV, PVX and PVY from dormant potato tubers. Afr. J. Biotechnol. 8:4043-4047.
4. Boubourakas, I. N., Fukuta, S. and Kyriakopoulou, P. E. 2009. Sensitive and rapid detection of peach latent mosaic viroid by the reverse transcription loop-mediated isothermal amplification. J. Virol. Methods 160:63-68.
5. Bryan, G. J. and Hein, I. 2008. Genome resources and tools for gene function analysis in potato. Int. J. Plant Genomics doi:10.1155/2008/216513.
6. Casper, R. 1977. Detection of potato leafroll virus in potato and in Physalis floridana by Enzyme-Linked Immunosorbent Assay (ELISA). J. Phytopathol. 90:364-368.
7. FAO. 2008. Economic crisis threatens "potato boom". http:// www.fao.org/news/story/en/item/8901/icode/ (Accessed July 15, 2011).
8. Fukuta, S., Iida, T., Mizukami, Y., Ishida, A., Ueda, J., Kanbe, M. and Ishimoto, Y. 2003. Detection of Japanese yam mosaic virus by RT-LAMP. Arch. Virol. 148:1713-1720.
9. Fukuta, S., Ohishi, K., Yoshida, K., Mizukami, Y., Ishida, A. and Kanbe, M., 2004. Development of immunocapture reverse transcription loop-mediated isothermal amplification for the detection of tomato spotted wilt virus from chrysanthemum. J. Virol. Methods 121:49-55.
10. Goto, M., Honda, E., Ogura, A., Nomoto, A. and Hanaki, K.-I. 2009. Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxyl napthol blue. Bio-Techniques 46:167-172.
11. Gray, S. and Gildow, F. E. 2003. Luteovirus-aphid interactions. Annu. Rev. Phytopathol. 41:539-566.
12. Hadidi, A., Montasser, M. S., Levy, L., Goth, R. W., Converse, R. H., Madkour, M. A. and Skrzeckowski, L. J. 1993. Detection of potato leafroll and strawberry mild yellow-edge luteoviruses by reverse transcription-polymerase chain reaction amplification. Plant Dis. 77:595-601.
13. Harrison, B. D. 1984. Potato leafroll virus. In AAB Description of Plant Viruses, no. 291.
14. Harrison, B. D. 1985. Studies on the behavior of potato leaf roll and other viruses in the body of their aphid vector Myzus persicae (Sulz.). Virology 6:265-277.
15. Le, D. T., Netsu, O., Uehara-Ichiki, T., Shimizu, T., Choi, I.-R., Omura, T. and Sasaya, T. 2010. Molecular detection of nine rice viruses by a reverse-transcription loop-mediated isothermal amplification assay. J. Virol. Methods 170:90-93.
16. Lee, L., Kaplan, I. B., Ripoll, D. R., Liang, D., Palukaitis, P. and Gray, S. M. 2005. A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement, and aphid transmission. J. Virol. 79:1207-1214.
17. Mumford, R. A., Walsh, K., Barker, L. and Boonham, N. 2000. Detection of Potato mop top virus and tobacco rattle virus using a multiplex-realtime fluorescent reverse-transcription polymerase chain reaction assay. Phytopathology 90:448-453.
18. Nagamine, K., Hase, T. and Notomi, T. 2002. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell Probes 16:223-229.
19. Nie, X. 2005. Reverse transcription loop-mediated isothermal amplification of DNA for detection of potato virus Y. Plant Dis. 89:605-610.
20. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N. and Hase, T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28:E63.
21. Nurkiyanova, K. M., Ryabov, E. V., Commandeur, U., Duncan, G. H., Canto, T., Gray, S. M., Mayo, M. A. and Taliansky, M. E. 2000. Tagging potato leafroll virus with the jellyfish green fluorescent protein gene. J. Gen. Virol. 81:617-626.
22. Peiman, M. and Xie, C. 2006. Sensitive detection of potato viruses, PVX, PLRV and PVS, by RT-PCR in potato leaf and tuber. Australasian Plant Dis. Notes 1:41-46.
23. Peter, K. A., Liang, D., Palukaitis, P. and Gray, S. M. 2008. Small deletions in the potato leafroll virus readthrough protein affect particle morphology, aphid transmission, virus movement and accumulation. J. Gen. Virol. 89:2037-2045.
24. Salazar, L. F. 1996. Potato viruses and their control. CIP, Lima. p. 214.
25. Singh, R. P., Kurz, J., Boiteau, G., Beernar, G. 1995. Detection of potato leafroll virus in single aphids by the reverse transcription polymerase chain reaction and its potential epidemiological application. J. Virol. Methods 55:133-143.
26. Singh, R. P., Kurz, J., Boiteau, G. and Moore, L. M. 1997. Potato leafroll virus detection by RT-PCR in field-collected aphids. Am. Potato J. 74:305-313.
27. Spiegel, S. and Martin, R. R. 1993. Improved detection of potato leafroll virus in dormant potato tubers and microtubers by the polymerase chain reaction and ELISA. Ann. Appl. Biol. 122:493-500.
28. Stark, D., van Hal, S., Fotedar, R., Butcher, A., Marriott, D., Ellis, J. and Harkness, J. 2008. Comparison of stool antigen detection kits to PCR for diagnosis of amebiasis. J. Clin. Microbiol. 46:1678-1681.
29. Taliansky, M., Mayo, M. A. and Barker, H. 2003. Potato leafroll virus: a classic pathogen shows some new tricks. Mol. Plant Pathol. 4:81-89.
30. The Potato Genome Sequencing Consortium, 2011 Genome sequence and analysis of the tuber crop potato. Nature 475:189-195.
31. Tomita, N., Mori, Y., Kanda, H. and Notomi, T. 2008. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat. Protoc. 3:877-882.
32. Varga, A. and James, D. 2006. Use of reverse transcription loopmediated isothermal amplification for the detection of plum pox virus. J. Virol. Methods 138:184-190.
33. Webster, C. G., Wylie, S. J. and Jones, M. G. K. 2004. Diagnosis of plant viral pathogens. Curr. Sci. 12:1604-1607.
34. Wikipedia. 2011. List of potato diseases. http://en.wikipedia.org/ wiki/List_of_potato_ diseases (Accessed July 15, 2011).
35. Zaghloul, M. Z. 2011. Human bocavirus (HBoV) in children with respiratory tract infection by enzyme linked immunosorbent assay (ELISA) and qualitative polymerase chain reaction (PCR). Virol. J. 239doi:10.1186/1743-22x-8-239.