Visual Detection of Potato leafroll virus by One-step Reverse Transcription Loop-Mediated Isothermal Amplification of DNA with Hydroxynaphthol Blue Dye

Journal of Phytopathology

Volumn 161, Issue 2, 2013, Pages 120-124

  Ahmadi, Sayvan ^a   Almasi, Mohammad A ^b   Fatehi, Foad ^a   Struik, Paul C ^c   Moradi, Aboubakr ^b  

^a UNIVERSITY OF TEHRAN   (Iran)

^b UNIVERSITY OF ZANJAN   (Iran)

^c WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Hydroxynaphthol blue dye; One step RT LAMP; Potato leafroll virus

Indexed keywords

DYE; ELECTROKINESIS; MITOCHONDRIAL DNA; POTATO; PROTEIN; REAL TIME; VIRAL DISEASE; VIRUS; VISUAL ANALYSIS;

POLEROVIRUS; POTATO LEAFROLL VIRUS; SOLANUM TUBEROSUM;

EID: 84872336271     PISSN: 09311785     EISSN: 14390434     Source Type: Journal    
DOI: 10.1111/jph.12037     Document Type: Article

References (35)

1. ® real-time RT-PCR. J Virol Methods 142:1-9.
2. Al-Mrabeh A, Ziegler A, Cowan G, Torrance L. (2009) A fully recombinant ELISA using in vivo biotinylated antibody fragments for the detection of potato leafroll virus. J Virol Methods 159:200-205.
3. Alvarez JM, Srinivasan R. (2005) Evaluation of hairy nightshade as an inoculum source for aphid-mediated transmission of Potato leafroll virus. J Econ Entomol 98:1101-1108.
4. Boa H, Wang X, Zhao Y, Sun X, Li Y, Xiong Y, Chen H. (2012) Development of a reverse transcription loop-mediated isothermal amplification method for the rapid detection of Avian influenza virus subtype H7. J Virol Methods 179:33-37.
5. Buates S, Bantuchai S, Sattabongkot J, Han ET, Tsuboi T, Udomsangpetch R, Sirichaisinthop J, Tan-ariya P. (2010) Development of a reverse transcription-loop-mediated isothermal amplification (RT-LAMP) for clinical detection of Plasmodium falciparum gametocytes. Parasitol Int 59:414-420.
6. Clark MF, Adams AN. (1977) Characteristic of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J Gen Virol 34:475-483.
7. Denschlag C, Vogel RF, Niessen L. (2012) Hyd5 gene-based detection of the major gushing-inducing Fusarium spp. in a loop-mediated isothermal amplification (LAMP) assay. Inter J Food Microbiol 156:189-196.
8. Fang XE, Li J, Chen Q. (2008) One new method of nucleic acid amplification loop-mediated isothermal amplification of DNA. Virol Sin 23:167-172.
9. Fukuta S, Iida T, Mizukami Y, Ishida A, Ueda J, Kanbe M, Ishimoto Y. (2003) Detection of Japanese yam mosaic virus by RT-LAMP. Arch Virol 148:1713-1720.
10. Gildow FE, Reavy B, Mayo MA, Duncan GH, Woodford JAT, Lamb JW, Hay RT. (2000) Aphid acquisition and cellular transport of Potato leafroll virus like particles lacking P5 readthrough protein. Phytopathology 90:1153-1161.
11. Goto M, Shimada K, Sato A et al. (2010) Rapid detection of Pseudomonas aeruginosa in mouse feces by colorimetric loop-mediated isothermal amplification. J Microbiol Methods 81:247-252.
12. Guyader S, Ducray DG. (2002) Sequence analysis of Potato leafroll virus isolates reveals genetic stability, major evolutionary events and differential selection pressure between overlapping reading frame products. J Gen Virol 83:1799-1807.
13. Haridas DV, Pillai D, Manojkumar B, Mohanakumaran Nair C, Sherief PM. (2010) Optimization of reverse transcriptase loop-mediated isothermal amplification assay for rapid detection of Macrobrachium rosenbergii noda virus and extra small virus in Macrobrachium rosenbergii. J Virol Methods 167:61-67.
14. Klerks MM, Leone GOM, Verbeek M, Heuvel JFJM, Schoen CD. (2001) Development of a multiplex AmpliDet RNA for the simultaneous detection of Potato leafroll virus and Potato virus Y in potato tubers. J Virol Methods 93:115-125.
15. Lee MS, Yang MJ, Hseu YC, Lai GH, Chang WT, Hsu YH, Lin MK. (2011) One-step reverse transcription loop-mediated isothermal amplification assay for rapid detection of Cymbidium mosaic virus. J Virol Methods 173:43-48.
16. Leone G, Schijndel HB, Gemen B, Schoen CD. (1997) Direct detection of potato leafroll virus in potato tubers by immunocapture and the isothermal nucleic acid amplification method NASBA. J Virol Methods 66:19-27.
17. Li L, Ba J, Wu X, Wang Z, Wang J, Gong M, Liu C, Li J. (2010) Rapid detection of peste des petits ruminants virus by a reverse transcription loop-mediated isothermal amplification assay. J Virol Methods 170:37-41.
18. Nagamine K, Hase T, Notomi T. (2002) Accelerated reaction by loop mediated isothermal amplification using loop primers. Mol Cell Probes 16:223-229.
19. Nie X. (2006) Reverse Transcription loop-mediated isothermal amplification of DNA for detection of Potato virus Y. Plant Dis 89:605-610.
20. Niessen L, Vogel RF. (2010) Detection of Fusarium graminearum DNA using a loop-mediated isothermal amplification (LAMP) assay. Inter J Food Microbiol 140:183-191.
21. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T. (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:e63.
22. Obura E, Masiga D, Wachira F, Gurja B, Khan ZR. (2011) Detection of phytoplasma by loop-mediated isothermal amplification of DNA (LAMP). J Microbiol Methods 84:312-316.
23. Rowhani A, Stace-Smith R. (1979) Purification and characterization of Potato leafroll virus. Virology 98:45-54.
24. Rudra PS. (1999) A solvent-free, rapid and simple virus RNA-release method for potato leafroll virus detection in aphids and plants by reverse transcription polymerase chain reaction. J Virol Methods 83:27-33.
25. Saitou Y, Kobayashi Y, Hirano S, Mochizuki N, Itou T, Ito FH, Sakai T. (2010) A method for simultaneous detection and identification of Brazilian dog- and vampire bat-related rabies virus by reverse transcription loop-mediated isothermal amplification assay. J Virol Methods 168:13-17.
26. Sheila M, Jones M, Jones MGK, Jones RAC, Thomson G, Dwyer GI. (2009) A single tube, quantitative real-time RT-PCR assay that detects four potato viruses simultaneously. J Virol Methods 161:289-296.
27. Shirato K, Nishimura H, Saijo M, Okamotoc M, Noda M, Tashiro M, Taguchi F. (2007) Diagnosis of human respiratory syncytial virus infection using reverse transcription loop-mediated isothermal amplification. J Virol Methods 139:78-84.
28. Singh RP, Kurz J, Boiteau G, Bernard G. (1995) Detection of potato leafroll virus in single aphids by the reverse transcription polymerase chain reaction and its potential epidemiological application. J Virol Methods 55:133-143.
29. Song L, Li J, Hou S, Li X, Chen S. (2012) Establishment of loop-mediated isothermal amplification (LAMP) for rapid detection of Brucella spp. and application to milk and blood samples. J Microbiol Methods 90:292-297.
30. Thomas PE, Lawson EC, Zalewski JC, Reed GL, Kaniewski WK. (2000) Extreme resistance to Potato leafroll virus in potato cv. Russet Burbank mediated by the viral replicase gene. Virus Res 71:49-62.
31. Tsai SM, Liu HJ, Shien JH, Lee LH, Chang PC, Wang CY. (2012) Rapid and sensitive detection of infectious bursal disease virus by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick. J Virol Methods 181:117-124.
32. Wang X, Zhu JP, Zhang Q, Xu ZG, Zhang F, Zhao ZH, Zheng WZ, Zheng LS. (2012) Detection of enterovirus 71 using reverse transcription loop-mediated isothermal amplification (RT-LAMP). J Virol Methods 179:330-334.
33. Wilk FVD, Huisman MJ, Cornelissen BGC, Huttinga H, Goldbach R. (1989) Nucleotide sequence and organization of potato leafroll virus genomic RNA. FEBS Lett 245:51-56.
34. Wilk FVD, Verbeek M, Dullemans AM, Heuvel JFJM. (1997) The genome-linked protein of Potato leafroll virus is located downstream of the putative protease domain of the ORF1 product. Virology 234:300-303.
35. Yin S, Shang Y, Zhou G, Tian H, Liu Y, Cai X, Liu X. (2010) Development and evaluation of rapid detection of classical swine fever virus by reverse transcription loop-mediated isothermal amplification (RT-LAMP). J Biotechnol 146:147-150.