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Volumn 32, Issue 6, 2015, Pages 1611-1627

The effects of partitioning on phylogenetic inference

Author keywords

molecular evolution; partitioning; tree inference; tree topology

Indexed keywords

ALGORITHM; ARTICLE; BOOTSTRAPPING; CODON; COMPARATIVE STUDY; EXON; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; BIOLOGICAL MODEL; CLASSIFICATION; EMPIRICAL RESEARCH; GENETIC DATABASE; PROCEDURES;

EID: 84930727731     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msv026     Document Type: Article
Times cited : (105)

References (118)
  • 1
    • 14544289241 scopus 로고    scopus 로고
    • Accounting for uncertainty in the tree topology has little effect on the decision-Theoretic approach to model selection in phylogeny estimation
    • Abdo Z, Minin VN, Joyce P, Sullivan J. 2005. Accounting for uncertainty in the tree topology has little effect on the decision-Theoretic approach to model selection in phylogeny estimation. Mol Biol Evol. 22(3):691-703.
    • (2005) Mol Biol Evol. , vol.22 , Issue.3 , pp. 691-703
    • Abdo, Z.1    Minin, V.N.2    Joyce, P.3    Sullivan, J.4
  • 4
    • 84882796454 scopus 로고    scopus 로고
    • Bayesian tests of topology hypotheses with an example from diving beetles
    • Bergsten J, Nilsson AN, Ronquist F. 2013a. Bayesian tests of topology hypotheses with an example from diving beetles. Syst Biol. 62(5):660-673.
    • (2013) Syst Biol. , vol.62 , Issue.5 , pp. 660-673
    • Bergsten, J.1    Nilsson, A.N.2    Ronquist, F.3
  • 5
    • 84930696860 scopus 로고    scopus 로고
    • Data from: Bayesian tests of topology hypotheses with an example from diving beetles
    • Bergsten J, Nilsson AN, Ronquist F. 2013b. Data from: Bayesian tests of topology hypotheses with an example from diving beetles. Dryad Data Repository. doi:10. 5061/dryad. s631d.
    • (2013) Dryad Data Repository.
    • Bergsten, J.1    Nilsson, A.N.2    Ronquist, F.3
  • 6
    • 78650445809 scopus 로고    scopus 로고
    • Recent trends in molecular phylogenetic analysis: Where to next
    • Blair C, Murphy RW. 2011. Recent trends in molecular phylogenetic analysis: where to next? J Hered. 102(1):130-138.
    • (2011) J Hered. , vol.102 , Issue.1 , pp. 130-138
    • Blair, C.1    Murphy, R.W.2
  • 7
    • 84905001681 scopus 로고    scopus 로고
    • An experimentally determined evolutionary model dramatically improves phylogenetic fit
    • Bloom JD. 2014. An experimentally determined evolutionary model dramatically improves phylogenetic fit. Mol Biol Evol. 31(8):1956-1978.
    • (2014) Mol Biol Evol. , vol.31 , Issue.8 , pp. 1956-1978
    • Bloom, J.D.1
  • 8
    • 81455139789 scopus 로고    scopus 로고
    • Matching split distance for unrooted binary phylogenetic trees
    • Bogdanowicz D, Giaro K. 2012. Matching split distance for unrooted binary phylogenetic trees. IEEE ACM Trans Comput Biol Bioinform. 9(1):150-160.
    • (2012) IEEE ACM Trans Comput Biol Bioinform. , vol.9 , Issue.1 , pp. 150-160
    • Bogdanowicz, D.1    Giaro, K.2
  • 10
    • 9944255059 scopus 로고    scopus 로고
    • Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
    • Brandley MC, Schmitz A, Reeder TW. 2005. Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards. Syst Biol. 54(3):373-390.
    • (2005) Syst Biol. , vol.54 , Issue.3 , pp. 373-390
    • Brandley, M.C.1    Schmitz, A.2    Reeder, T.W.3
  • 11
    • 85065342742 scopus 로고    scopus 로고
    • Data from: Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution
    • Broughton RE, Betancur RR, Li C, Arratia G, Orti G. 2013a. Data from: Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution. Dryad Data Repository. doi:10. 5061/dryad. f1t15.
    • (2013) Dryad Data Repository.
    • Broughton, R.E.1    Betancur, R.R.2    Li, C.3    Arratia, G.4    Orti, G.5
  • 12
    • 84876312266 scopus 로고    scopus 로고
    • Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution
    • Broughton RE, Betancur RR, Li C, Arratia G, Orti G. 2013b. Multi-locus phylogenetic analysis reveals the pattern and tempo of bony fish evolution. PLoS Curr TOL 5(1).
    • (2013) PLoS Curr TOL , vol.5 , Issue.1
    • Broughton, R.E.1    Betancur, R.R.2    Li, C.3    Arratia, G.4    Orti, G.5
  • 13
    • 37249003697 scopus 로고    scopus 로고
    • The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics
    • Brown JM, Lemmon AR. 2007. The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics. Syst Biol. 56(4):643-655.
    • (2007) Syst Biol. , vol.56 , Issue.4 , pp. 643-655
    • Brown, J.M.1    Lemmon, A.R.2
  • 14
    • 84930689556 scopus 로고    scopus 로고
    • Data from: Testing the phylogenetic affinities of Southeast Asia's rarest geckos: Flaplegged geckos (Luperosaurus), Flying geckos (Ptychozoon) and their relationship to the pan-Asian genus Gekko
    • Brown RM, Siler CD, Das I, Min PY. 2012a. Data from: Testing the phylogenetic affinities of Southeast Asia's rarest geckos: Flaplegged geckos (Luperosaurus), Flying geckos (Ptychozoon) and their relationship to the pan-Asian genus Gekko. Dryad Data Repository. doi:10. 5061/dryad. 7bn0fr99.
    • (2012) Dryad Data Repository.
    • Brown, R.M.1    Siler, C.D.2    Das, I.3    Min, P.Y.4
  • 15
    • 84862825157 scopus 로고    scopus 로고
    • Testing the phylogenetic affinities of Southeast Asia's rarest geckos: Flap-legged geckos (Luperosaurus), Flying geckos (Ptychozoon) and their relationship to the pan-Asian genus Gekko
    • Brown RM, Siler CD, Das I, Min Y. 2012b. Testing the phylogenetic affinities of Southeast Asia's rarest geckos: Flap-legged geckos (Luperosaurus), Flying geckos (Ptychozoon) and their relationship to the pan-Asian genus Gekko. Mol Phylogenet Evol. 63(3):915-921.
    • (2012) Mol Phylogenet Evol. , vol.63 , Issue.3 , pp. 915-921
    • Brown, R.M.1    Siler, C.D.2    Das, I.3    Min, Y.4
  • 16
    • 0036213207 scopus 로고    scopus 로고
    • The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
    • Buckley TR, Cunningham CW. 2002. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Mol Biol Evol. 19(4):394-405.
    • (2002) Mol Biol Evol. , vol.19 , Issue.4 , pp. 394-405
    • Buckley, T.R.1    Cunningham, C.W.2
  • 17
    • 0035527383 scopus 로고    scopus 로고
    • Exploring among-site rate variation models in a maximum likelihood framework using empirical data: Effects of model assumptions on estimates of topology, branch lengths, and bootstrap support
    • Buckley TR, Simon C, Chambers GK. 2001. Exploring among-site rate variation models in a maximum likelihood framework using empirical data: effects of model assumptions on estimates of topology, branch lengths, and bootstrap support. Syst Biol. 50(1):67-86.
    • (2001) Syst Biol. , vol.50 , Issue.1 , pp. 67-86
    • Buckley, T.R.1    Simon, C.2    Chambers, G.K.3
  • 19
    • 84864564784 scopus 로고    scopus 로고
    • A mitochondrial genome phylogeny of termites (Blattodea: Termitoidae: Robust support for interfamilial relationships and molecular synapomorphies define major clades
    • Cameron SL, Lo N, Bourguignon T, Svenson GJ, Evans TA. 2012. A mitochondrial genome phylogeny of termites (Blattodea: Termitoidae): robust support for interfamilial relationships and molecular synapomorphies define major clades. Mol Phylogenet Evol. 65(1):163-173.
    • (2012) Mol Phylogenet Evol. , vol.65 , Issue.1 , pp. 163-173
    • Cameron, S.L.1    Lo, N.2    Bourguignon, T.3    Svenson, G.J.4    Evans, T.A.5
  • 20
    • 0035527381 scopus 로고    scopus 로고
    • A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae)
    • Caterino MS, Reed RD, Kuo MM, Sperling FAH. 2001. A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae). Syst Biol. 50(1):106-127.
    • (2001) Syst Biol. , vol.50 , Issue.1 , pp. 106-127
    • Caterino, M.S.1    Reed, R.D.2    Kuo, M.M.3    Sperling, F.A.H.4
  • 21
    • 84930692881 scopus 로고    scopus 로고
    • Distory: Distance between phylogenetic histories
    • Chakerian J, Holmes S. 2013. Distory: distance between phylogenetic histories. R package version 1. 4. 1. http://CRAN. R-project. org/package=distory.
    • (2013) R Package Version 1. 4. 1.
    • Chakerian, J.1    Holmes, S.2
  • 22
    • 84864249563 scopus 로고    scopus 로고
    • Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
    • Chiari Y, Cahais V, Galtier N, Delsuc F. 2012. Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria). BCM Biol. 10(1):65.
    • (2012) BCM Biol. , vol.10 , Issue.1 , pp. 65
    • Chiari, Y.1    Cahais, V.2    Galtier, N.3    Delsuc, F.4
  • 23
    • 84924217955 scopus 로고    scopus 로고
    • Data from: Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae)
    • Cognato AI, Vogler AP. 2001a. Data from: Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae). Dryad Data Repository. doi:10. 5061/dryad. 678.
    • (2001) Dryad Data Repository.
    • Cognato, A.I.1    Vogler, A.P.2
  • 24
    • 0035527391 scopus 로고    scopus 로고
    • Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae)
    • Cognato AI, Vogler AP. 2001b. Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae). Syst Biol. 50(6):758-780.
    • (2001) Syst Biol. , vol.50 , Issue.6 , pp. 758-780
    • Cognato, A.I.1    Vogler, A.P.2
  • 25
    • 84865382153 scopus 로고    scopus 로고
    • More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs
    • Crawford NG, Faircloth BC, McCormack JE, Brumfield RT, Winker K, Glenn TC. 2012. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biol Lett. 8(5):783-786.
    • (2012) Biol Lett. , vol.8 , Issue.5 , pp. 783-786
    • Crawford, N.G.1    Faircloth, B.C.2    McCormack, J.E.3    Brumfield, R.T.4    Winker, K.5    Glenn, T.C.6
  • 26
  • 27
    • 84876271508 scopus 로고    scopus 로고
    • Continental diversification of an African catfish radiation (Mochokidae: Synodontis)
    • Day JJ, Peart CR, Brown KJ, Friel JP, Bills R, Moritz T. 2013. Continental diversification of an African catfish radiation (Mochokidae: Synodontis). Syst Biol. 62(3):351-365.
    • (2013) Syst Biol. , vol.62 , Issue.3 , pp. 351-365
    • Day, J.J.1    Peart, C.R.2    Brown, K.J.3    Friel, J.P.4    Bills, R.5    Moritz, T.6
  • 29
    • 84875218471 scopus 로고    scopus 로고
    • Montane refugia predict population genetic structure in the Large-blotched Ensatina salamander
    • Devitt TJ, Cameron Devitt SE, Hollingsworth BD, McGuire JA, Moritz C. 2013b. Montane refugia predict population genetic structure in the Large-blotched Ensatina salamander. Mol Ecol. 22(6):1650-1665.
    • (2013) Mol Ecol. , vol.22 , Issue.6 , pp. 1650-1665
    • Devitt, T.J.1    Cameron Devitt, S.E.2    Hollingsworth, B.D.3    McGuire, J.A.4    Moritz, C.5
  • 30
    • 84930700400 scopus 로고    scopus 로고
    • Data from: Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei:Beryciformes: Holocentridae): Reconciling more than 100 years of taxonomic confusion
    • Dornburg A, Moore JA, Webster R, Warren DL, Brandley MC, Iglesias TL, Wainwright PC, Near TJ. 2012a. Data from: Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei:Beryciformes: Holocentridae): reconciling more than 100 years of taxonomic confusion. Dryad Data Repository. doi:10. 5061/dryad. 3t19n.
    • (2012) Dryad Data Repository.
    • Dornburg, A.1    Moore, J.A.2    Webster, R.3    Warren, D.L.4    Brandley, M.C.5    Iglesias, T.L.6    Wainwright, P.C.7    Near, T.J.8
  • 31
    • 84866146611 scopus 로고    scopus 로고
    • Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei: Beryciformes: Holocentridae): Reconciling more than 100 years of taxonomic confusion
    • Dornburg A, Moore JA, Webster R, Warren DL, Brandley MC, Iglesias TL, Wainwright PC, Near TJ. 2012b. Molecular phylogenetics of squirrelfishes and soldierfishes (Teleostei: Beryciformes: Holocentridae): reconciling more than 100 years of taxonomic confusion. Mol Phylogenet Evol. 65(2):727-738.
    • (2012) Mol Phylogenet Evol. , vol.65 , Issue.2 , pp. 727-738
    • Dornburg, A.1    Moore, J.A.2    Webster, R.3    Warren, D.L.4    Brandley, M.C.5    Iglesias, T.L.6    Wainwright, P.C.7    Near, T.J.8
  • 32
    • 79953080995 scopus 로고    scopus 로고
    • Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae)
    • Dsouli N, Delsuc F, Michaux J, De Stordeur E, Couloux A, Veuille M, Duvallet G. 2011. Phylogenetic analyses of mitochondrial and nuclear data in haematophagous flies support the paraphyly of the genus Stomoxys (Diptera: Muscidae). Infect Genet Evol. 11(3):663-670.
    • (2011) Infect Genet Evol. , vol.11 , Issue.3 , pp. 663-670
    • Dsouli, N.1    Delsuc, F.2    Michaux, J.3    De Stordeur, E.4    Couloux, A.5    Veuille, M.6    Duvallet, G.7
  • 33
    • 78049393191 scopus 로고    scopus 로고
    • Phylogenetic utility of five genes for dipteran phylogeny: A test case in the Chironomidae leads to generic synonymies
    • Ekrem T, Willassen E, Stur E. 2010. Phylogenetic utility of five genes for dipteran phylogeny: A test case in the Chironomidae leads to generic synonymies. Mol Phylogenet Evol. 57(2):561-571.
    • (2010) Mol Phylogenet Evol. , vol.57 , Issue.2 , pp. 561-571
    • Ekrem, T.1    Willassen, E.2    Stur, E.3
  • 36
    • 84930701234 scopus 로고    scopus 로고
    • Data from: Phylogeny of Saxifragales (angiosperms, eudicots): Analysis of a rapid, ancient radiation
    • Fishbein M, Hibsch-Jetter C, Soltis DE, Hufford L. 2001a. Data from: Phylogeny of Saxifragales (angiosperms, eudicots): Analysis of a rapid, ancient radiation. Dryad Data Repository. doi:10. 5061/ dryad. 684.
    • (2001) Dryad Data Repository.
    • Fishbein, M.1    Hibsch-Jetter, C.2    Soltis, D.E.3    Hufford, L.4
  • 37
    • 0035527390 scopus 로고    scopus 로고
    • Phylogeny of Saxifragales (Angiosperms, Eudicots): Analysis of a rapid, ancient radiation
    • Fishbein M, Hibsch-Jetter C, Soltis DE, Hufford L. 2001b. Phylogeny of Saxifragales (Angiosperms, Eudicots): Analysis of a rapid, ancient radiation. Syst Biol. 50(6):817-847.
    • (2001) Syst Biol. , vol.50 , Issue.6 , pp. 817-847
    • Fishbein, M.1    Hibsch-Jetter, C.2    Soltis, D.E.3    Hufford, L.4
  • 38
    • 84900439203 scopus 로고    scopus 로고
    • Data from: A phylogenomic approach to vertebrate phylogeny supports a turtle-Archosaur affinity and a possible paraphyletic Lissamphibia
    • Fong JJ, Brown JM, Fujita MK, Boussau B. 2012a. Data from: A phylogenomic approach to vertebrate phylogeny supports a turtle-Archosaur affinity and a possible paraphyletic Lissamphibia. Dryad Data Repository. doi:10. 5061/dryad. 25j6h.
    • (2012) Dryad Data Repository.
    • Fong, J.J.1    Brown, J.M.2    Fujita, M.K.3    Boussau, B.4
  • 39
    • 84868678250 scopus 로고    scopus 로고
    • A phylogenomic approach to vertebrate phylogeny supports a turtle-Archosaur affinity and a possible paraphyletic Lissamphibia
    • Fong JJ, Brown JM, Fujita MK, Boussau B. 2012b. A phylogenomic approach to vertebrate phylogeny supports a turtle-Archosaur affinity and a possible paraphyletic Lissamphibia. PLoS ONE 7(11):e48990.
    • (2012) PLoS ONE , vol.7 , Issue.11 , pp. e48990
    • Fong, J.J.1    Brown, J.M.2    Fujita, M.K.3    Boussau, B.4
  • 40
    • 0028790653 scopus 로고
    • Inferring phylogenies from DNA sequences of unequal base compositions
    • Galtier N, Gouy M. 1995. Inferring phylogenies from DNA sequences of unequal base compositions. Proc Natl Acad Sci U S A. 92(24):11317-11321.
    • (1995) Proc Natl Acad Sci U S A. , vol.92 , Issue.24 , pp. 11317-11321
    • Galtier, N.1    Gouy, M.2
  • 41
    • 84891813147 scopus 로고    scopus 로고
    • Limits and relationships of Paracanthopterygii: A molecular framework for evaluating past morphological hypotheses
    • Grande T, Borden W, Smith W. 2013a. Limits and relationships of Paracanthopterygii: A molecular framework for evaluating past morphological hypotheses. Mesozoic Fishes 5:385-418.
    • (2013) Mesozoic Fishes , vol.5 , pp. 385-418
    • Grande, T.1    Borden, W.2    Smith, W.3
  • 42
    • 84924175311 scopus 로고    scopus 로고
    • Data from: Limits and relationships of Paracanthopterygii: A molecular framework for evaluating past morphological hypotheses
    • Grande T, Borden WC, Smith WL. 2013b. Data from: Limits and relationships of Paracanthopterygii: A molecular framework for evaluating past morphological hypotheses. Dryad Data Repository. doi:10. 5061/dryad. k4m8t.
    • (2013) Dryad Data Repository
    • Grande, T.1    Borden, W.C.2    Smith, W.L.3
  • 45
    • 71749099862 scopus 로고    scopus 로고
    • PhyloXML: XML for evolutionary biology and comparative genomics
    • Han M, Zmasek C. 2009. phyloXML: XML for evolutionary biology and comparative genomics. BMC Bioinformatics 10(1):356.
    • (2009) BMC Bioinformatics , vol.10 , Issue.1 , pp. 356
    • Han, M.1    Zmasek, C.2
  • 46
    • 77956087396 scopus 로고    scopus 로고
    • Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks
    • Ho SY, Lanfear R. 2010. Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks. Mitochondrial DNA 21(3-4):138-146.
    • (2010) Mitochondrial DNA , vol.21 , Issue.3-4 , pp. 138-146
    • Ho, S.Y.1    Lanfear, R.2
  • 47
    • 0032923454 scopus 로고    scopus 로고
    • Variation in the pattern of nucleotide substitution across sites
    • Huelsenbeck JP, Nielsen R. 1999. Variation in the pattern of nucleotide substitution across sites. J Mol Evol. 48:86-93.
    • (1999) J Mol Evol. , vol.48 , pp. 86-93
    • Huelsenbeck, J.P.1    Nielsen, R.2
  • 50
    • 84872908276 scopus 로고    scopus 로고
    • Comprehensive phylogenetic analysis of all species of swordtails and platies (Pisces: Genus Xiphophorus) uncovers a hybrid origin of a swordtail fish, Xiphophorus monticolus, and demonstrates that the sexually selected sword originated in the ancestral lineage of the genus, but was lost again secondarily
    • Kang JH, Schartl M, Walter R, Meyer A. 2013. Comprehensive phylogenetic analysis of all species of swordtails and platies (Pisces: Genus Xiphophorus) uncovers a hybrid origin of a swordtail fish, Xiphophorus monticolus, and demonstrates that the sexually selected sword originated in the ancestral lineage of the genus, but was lost again secondarily. BMC Evol Biol. 13(1):25.
    • (2013) BMC Evol Biol. , vol.13 , Issue.1 , pp. 25
    • Kang, J.H.1    Schartl, M.2    Walter, R.3    Meyer, A.4
  • 51
    • 84881025251 scopus 로고    scopus 로고
    • Convergent evolution of morphology and habitat use in the explosive Hawaiian fancy case caterpillar radiation
    • Kawahara AY, Rubinoff D. 2013a. Convergent evolution of morphology and habitat use in the explosive Hawaiian fancy case caterpillar radiation. J Evol Biol. 26(8):1763-1773.
    • (2013) J Evol Biol. , vol.26 , Issue.8 , pp. 1763-1773
    • Kawahara, A.Y.1    Rubinoff, D.2
  • 52
    • 84924146592 scopus 로고    scopus 로고
    • Data from: Convergent evolution in the explosive Hawaiian Fancy Cased caterpillar radiation
    • Kawahara AY, Rubinoff D. 2013b. Data from: Convergent evolution in the explosive Hawaiian Fancy Cased caterpillar radiation. Dryad Data Repository. doi:10. 5061/dryad. gh895.
    • (2013) Dryad Data Repository.
    • Kawahara, A.Y.1    Rubinoff, D.2
  • 54
    • 33846277992 scopus 로고    scopus 로고
    • Model use in phylogenetics: Nine key questions
    • Kelchner SA, Thomas MA. 2007. Model use in phylogenetics: nine key questions. Trends Ecol Evol. 22(2):87-94.
    • (2007) Trends Ecol Evol. , vol.22 , Issue.2 , pp. 87-94
    • Kelchner, S.A.1    Thomas, M.A.2
  • 55
    • 33846906954 scopus 로고    scopus 로고
    • Site specific rates of mitochondrial genomes and the phylogeny of eutheria
    • Kjer K, Honeycutt R. 2007. Site specific rates of mitochondrial genomes and the phylogeny of eutheria. BMC Evol Biol. 7(1):8.
    • (2007) BMC Evol Biol. , vol.7 , Issue.1 , pp. 8
    • Kjer, K.1    Honeycutt, R.2
  • 56
    • 0035527388 scopus 로고    scopus 로고
    • Phylogeny of Trichoptera (Caddisflies): Characterization of signal and noise within multiple datasets
    • Kjer KM, Blahnik RJ, Holzenthal RW. 2001. Phylogeny of Trichoptera (Caddisflies): characterization of signal and noise within multiple datasets. Syst Biol. 50(6):781-816.
    • (2001) Syst Biol. , vol.50 , Issue.6 , pp. 781-816
    • Kjer, K.M.1    Blahnik, R.J.2    Holzenthal, R.W.3
  • 57
    • 0033219088 scopus 로고    scopus 로고
    • Dynamically heterogenous partitions and phylogenetic inference: An evaluation of analytical strategies with cytochrome b and ND6 gene sequences in cranes
    • Krajewski C, Fain MG, Buckley L, King DG. 1999. Dynamically heterogenous partitions and phylogenetic inference: An evaluation of analytical strategies with cytochrome b and ND6 gene sequences in cranes. Mol Phylogenet Evol. 13(2):302-313.
    • (1999) Mol Phylogenet Evol. , vol.13 , Issue.2 , pp. 302-313
    • Krajewski, C.1    Fain, M.G.2    Buckley, L.3    King, D.G.4
  • 58
    • 84930686659 scopus 로고    scopus 로고
    • Data from: A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae)
    • Kuo MM, Sperling FAH, Caterino MS, Reed RD. 2001. Data from: A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae). Dryad Data Repository. doi:10. 5061/ dryad. 615.
    • (2001) Dryad Data Repository.
    • Kuo, M.M.1    Sperling, F.A.H.2    Caterino, M.S.3    Reed, R.D.4
  • 59
    • 84861380450 scopus 로고    scopus 로고
    • Partitionfinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear R, Calcott B, Ho SY, Guindon S. 2012. Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29(6):1695-1701.
    • (2012) Mol Biol Evol. , vol.29 , Issue.6 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.3    Guindon, S.4
  • 61
    • 84930739800 scopus 로고    scopus 로고
    • Data from: Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model
    • Lartillot N, Delsuc F. 2012a. Data from: Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model. Dryad Data Repository. doi:10. 5061/ dryad. Tt28qk6f.
    • (2012) Dryad Data Repository.
    • Lartillot, N.1    Delsuc, F.2
  • 62
    • 84861654988 scopus 로고    scopus 로고
    • Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model
    • Lartillot N, Delsuc F. 2012b. Joint reconstruction of divergence times and life-history evolution in placental mammals using a phylogenetic covariance model. Evolution 66(6):1773-1787.
    • (2012) Evolution , vol.66 , Issue.6 , pp. 1773-1787
    • Lartillot, N.1    Delsuc, F.2
  • 63
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-Acid replacement process
    • Lartillot N, Philippe H. 2004. A Bayesian mixture model for across-site heterogeneities in the amino-Acid replacement process. Mol Biol Evol. 21(6):1095-1109.
    • (2004) Mol Biol Evol. , vol.21 , Issue.6 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 64
    • 84877928220 scopus 로고    scopus 로고
    • Searching for the optimal data partitioning strategy in mitochondrial phylogenomics: A phylogeny of Acridoidea (Insecta: Orthoptera: Caelifera) as a case study
    • Leavitt JR, Hiatt KD, Whiting MF, Song H. 2013. Searching for the optimal data partitioning strategy in mitochondrial phylogenomics: A phylogeny of Acridoidea (Insecta: Orthoptera: Caelifera) as a case study. Mol Phylogenet Evol. 67(2):494-508.
    • (2013) Mol Phylogenet Evol. , vol.67 , Issue.2 , pp. 494-508
    • Leavitt, J.R.1    Hiatt, K.D.2    Whiting, M.F.3    Song, H.4
  • 66
    • 2442581218 scopus 로고    scopus 로고
    • The importance of proper model assumption in Bayesian phylogenetics
    • Lemmon AR, Moriarty EC. 2004. The importance of proper model assumption in Bayesian phylogenetics. Syst Biol. 53(2):265-277.
    • (2004) Syst Biol. , vol.53 , Issue.2 , pp. 265-277
    • Lemmon, A.R.1    Moriarty, E.C.2
  • 67
    • 47249090871 scopus 로고    scopus 로고
    • Optimal data partitioning and a test case for rayfinned fishes (Actinopterygii) based on ten nuclear loci
    • Li C, Lu G, Ort G. 2008. Optimal data partitioning and a test case for rayfinned fishes (Actinopterygii) based on ten nuclear loci. Syst Biol. 57(4):519-539.
    • (2008) Syst Biol. , vol.57 , Issue.4 , pp. 519-539
    • Li, C.1    Lu, G.2    Ort, G.3
  • 68
    • 33845446297 scopus 로고    scopus 로고
    • Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors
    • Marshall DC, Simon C, Buckley TR. 2006. Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors. Syst Biol. 55(6):993-1003.
    • (2006) Syst Biol. , vol.55 , Issue.6 , pp. 993-1003
    • Marshall, D.C.1    Simon, C.2    Buckley, T.R.3
  • 69
    • 38449093214 scopus 로고    scopus 로고
    • Phylogenetic systematics and biogeography of Hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy
    • McGuire JA, Witt CC, Altshuler DL, Remsen JV Jr. 2007. Phylogenetic systematics and biogeography of Hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Syst Biol. 56(5):19.
    • (2007) Syst Biol. , vol.56 , Issue.5 , pp. 19
    • McGuire, J.A.1    Witt, C.C.2    Altshuler, D.L.3    Remsen, J.V.4
  • 70
    • 70350158394 scopus 로고    scopus 로고
    • Phylogeny and classification of the tribe Hydaticini (Coleoptera: Dytiscidae): Partition choice for Bayesian analysis with multiple nuclear and mitochondrial protein-coding genes
    • Miller KB, Bergsten J, Whiting MF. 2009. Phylogeny and classification of the tribe Hydaticini (Coleoptera: Dytiscidae): partition choice for Bayesian analysis with multiple nuclear and mitochondrial protein-coding genes. Zool Scr. 38(6):591-615.
    • (2009) Zool Scr. , vol.38 , Issue.6 , pp. 591-615
    • Miller, K.B.1    Bergsten, J.2    Whiting, M.F.3
  • 71
    • 0242487488 scopus 로고    scopus 로고
    • Performance-based selection of likelihood models for phylogeny estimation
    • Minin V, Abdo Z, Joyce P, Sullivan J. 2003. Performance-based selection of likelihood models for phylogeny estimation. Syst Biol. 52(5):674-683.
    • (2003) Syst Biol. , vol.52 , Issue.5 , pp. 674-683
    • Minin, V.1    Abdo, Z.2    Joyce, P.3    Sullivan, J.4
  • 72
    • 84878230634 scopus 로고    scopus 로고
    • Ancient host shifts followed by host conservatism in a group of ant parasitoids
    • Murray EA, Carmichael AE, Heraty JM. 2013a. Ancient host shifts followed by host conservatism in a group of ant parasitoids. Proc R Soc Lond B Biol Sci. 280(1759)
    • (2013) Proc R Soc Lond B Biol Sci. , vol.280 , Issue.1759
    • Murray, E.A.1    Carmichael, A.E.2    Heraty, J.M.3
  • 73
    • 84930700844 scopus 로고    scopus 로고
    • Data from: Ancient host shifts followed by host conservatism in a group of ant parasitoids
    • Murray EA, Carmichael AE, Heraty JM. 2013b. Data from: Ancient host shifts followed by host conservatism in a group of ant parasitoids. Dryad Data Repository. doi:10. 5061/dryad. qn57t.
    • (2013) Dryad Data Repository
    • Murray, E.A.1    Carmichael, A.E.2    Heraty, J.M.3
  • 75
    • 4243140058 scopus 로고    scopus 로고
    • A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data
    • Pagel M, Meade A. 2004. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst Biol. 53(4):571-581.
    • (2004) Syst Biol. , vol.53 , Issue.4 , pp. 571-581
    • Pagel, M.1    Meade, A.2
  • 76
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis E, Claude J, Strimmer K. 2004. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20(2):289-290.
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 77
    • 67349118917 scopus 로고    scopus 로고
    • Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny
    • Phillips MJ. 2009. Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny. Gene 441(1-2):132-140.
    • (2009) Gene , vol.441 , Issue.1-2 , pp. 132-140
    • Phillips, M.J.1
  • 78
    • 12444319405 scopus 로고    scopus 로고
    • Empirical problems of the hierarchical Likelihood Ratio Test for model selection
    • Pol D. 2004. Empirical problems of the hierarchical Likelihood Ratio Test for model selection. Syst Biol. 53(6):949-962.
    • (2004) Syst Biol. , vol.53 , Issue.6 , pp. 949-962
    • Pol, D.1
  • 79
    • 9644301241 scopus 로고    scopus 로고
    • Model selection andmodel averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada D, Buckley TR. 2004. Model selection andmodel averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol. 53(5):793-808.
    • (2004) Syst Biol. , vol.53 , Issue.5 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 80
    • 0035527410 scopus 로고    scopus 로고
    • Selecting the best-fit model of nucleotide substitution
    • Posada DC, Crandall KA. 2001. Selecting the best-fit model of nucleotide substitution. Syst Biol. 50:580-601.
    • (2001) Syst Biol. , vol.50 , pp. 580-601
    • Posada, D.C.1    Crandall, K.A.2
  • 81
    • 42549165431 scopus 로고    scopus 로고
    • Molecular phylogeny and divergence times of Malagasy tenrecs: Influence of data partitioning and taxon sampling on dating analyses
    • Poux C, Madsen O, Glos J, de Jong WW, Vences M. 2008. Molecular phylogeny and divergence times of Malagasy tenrecs: influence of data partitioning and taxon sampling on dating analyses. BMC Evol Biol. 8:102.
    • (2008) BMC Evol Biol. , vol.8 , pp. 102
    • Poux, C.1    Madsen, O.2    Glos, J.3    De Jong, W.W.4    Vences, M.5
  • 82
    • 84870236542 scopus 로고    scopus 로고
    • Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: An avian case study
    • Powell AF, Barker FK, Lanyon SM. 2013. Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: An avian case study. Mol Phylogenet Evol. 66(1):69-79.
    • (2013) Mol Phylogenet Evol. , vol.66 , Issue.1 , pp. 69-79
    • Powell, A.F.1    Barker, F.K.2    Lanyon, S.M.3
  • 83
    • 33644820816 scopus 로고    scopus 로고
    • Under-parameterized model of sequence evolution leads to bias in the estimation of diversification rates from molecular phylogenies
    • Revell LJ, Harmon LJ, Glor RE. 2005. Under-parameterized model of sequence evolution leads to bias in the estimation of diversification rates from molecular phylogenies. Syst Biol. 54(6):973-983.
    • (2005) Syst Biol. , vol.54 , Issue.6 , pp. 973-983
    • Revell, L.J.1    Harmon, L.J.2    Glor, R.E.3
  • 84
    • 84930719665 scopus 로고    scopus 로고
    • Data from: Phylogeny and systematics of the bee genus Osmia (Hymenoptera: Megachilidae) with emphasis on North American Melanosmia: Subgenera, synonymies, and nesting biology revisited
    • Rightmyer MG, Griswold T, Brady SG. 2013a. Data from: Phylogeny and systematics of the bee genus Osmia (Hymenoptera: Megachilidae) with emphasis on North American Melanosmia: subgenera, synonymies, and nesting biology revisited. Dryad Data Repository. doi:10. 5061/dryad. jd5ff.
    • (2013) Dryad Data Repository.
    • Rightmyer, M.G.1    Griswold, T.2    Brady, S.G.3
  • 85
    • 84879417929 scopus 로고    scopus 로고
    • Phylogeny and systematics of the bee genus Osmia (Hymenoptera: Megachilidae) with emphasis on North American Melanosmia: Subgenera, synonymies and nesting biology revisited
    • RightmyerMG, Griswold T, Brady SG. 2013b. Phylogeny and systematics of the bee genus Osmia (Hymenoptera: Megachilidae) with emphasis on North American Melanosmia: subgenera, synonymies and nesting biology revisited. Syst Entomol. 38(3):561-576.
    • (2013) Syst Entomol. , vol.38 , Issue.3 , pp. 561-576
    • Rightmyer, M.G.1    Griswold, T.2    Brady, S.G.3
  • 86
    • 47749153850 scopus 로고    scopus 로고
    • Does choice in model selection affect maximum likelihood analysis
    • Ripplinger J, Sullivan J. 2008. Does choice in model selection affect maximum likelihood analysis? Syst Biol. 57(1):76-85.
    • (2008) Syst Biol , vol.57 , Issue.1 , pp. 76-85
    • Ripplinger, J.1    Sullivan, J.2
  • 87
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • Robinson D, Foulds LR. 1981. Comparison of phylogenetic trees. Math Biosci. 53(1):131-147.
    • (1981) Math Biosci. , vol.53 , Issue.1 , pp. 131-147
    • Robinson, D.1    Foulds, L.R.2
  • 89
    • 84865300288 scopus 로고    scopus 로고
    • Exploration of data partitioning in an eightgene data set: Phylogeny of metalmark moths (Lepidoptera, Choreutidae)
    • Rota J, Wahlberg N. 2012. Exploration of data partitioning in an eightgene data set: phylogeny of metalmark moths (Lepidoptera, Choreutidae). Zool Scr. 41(5):536-546.
    • (2012) Zool Scr. , vol.41 , Issue.5 , pp. 536-546
    • Rota, J.1    Wahlberg, N.2
  • 92
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwarz G. 1978. Estimating the dimension of a model. Ann Stat. 6(2):461-464.
    • (1978) Ann Stat. , vol.6 , Issue.2 , pp. 461-464
    • Schwarz, G.1
  • 93
    • 84930727329 scopus 로고    scopus 로고
    • Data from: Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data
    • Seago AE, Giorgi JA, Li J, Slipinski A. 2011a. Data from: Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data. Dryad Data Repository. doi:10. 5061/ dryad. dc1r2.
    • (2011) Dryad Data Repository.
    • Seago, A.E.1    Giorgi, J.A.2    Li, J.3    Slipinski, A.4
  • 94
    • 79956372816 scopus 로고    scopus 로고
    • Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data
    • Seago AE, Giorgi JA, Li J, Slipinski A. 2011b. Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data. Mol Phylogenet Evol. 60(1):137-151.
    • (2011) Mol Phylogenet Evol. , vol.60 , Issue.1 , pp. 137-151
    • Seago, A.E.1    Giorgi, J.A.2    Li, J.3    Slipinski, A.4
  • 95
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of proteincoding sequences
    • Shapiro B, Rambaut A, Drummond AJ. 2006. Choosing appropriate substitution models for the phylogenetic analysis of proteincoding sequences. Mol Biol Evol. 23(1):7-9.
    • (2006) Mol Biol Evol. , vol.23 , Issue.1 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 96
    • 84924154289 scopus 로고    scopus 로고
    • Data from: Molecular phylogenetics of Braconidae (Hymenoptera: Ichneumonoidea) based on multiple nuclear genes and implications for classification
    • Sharanowski BJ, Dowling APG, Sharkey MJ. 2011a. Data from: Molecular phylogenetics of Braconidae (Hymenoptera: Ichneumonoidea) based on multiple nuclear genes and implications for classification. Dryad Data Repository. doi:10. 5061/dryad. 1688p.
    • (2011) Dryad Data Repository.
    • Sharanowski, B.J.1    Dowling, A.P.G.2    Sharkey, M.J.3
  • 97
    • 79959690384 scopus 로고    scopus 로고
    • Molecular phylogenetics of Braconidae (Hymenoptera: Ichneumonoidea), based on multiple nuclear genes, and implications for classification
    • Sharanowski BJ, Dowling APG, Sharkey MJ. 2011b. Molecular phylogenetics of Braconidae (Hymenoptera: Ichneumonoidea), based on multiple nuclear genes, and implications for classification. Syst Entomol. 36(3):549-572.
    • (2011) Syst Entomol. , vol.36 , Issue.3 , pp. 549-572
    • Sharanowski, B.J.1    Dowling, A.P.G.2    Sharkey, M.J.3
  • 98
    • 81855206231 scopus 로고    scopus 로고
    • Multiple genome alignments facilitate development of NPCL markers: A case study of tetrapod phylogeny focusing on the position of turtles
    • Shen X-X, Liang D, Wen J-Z, Zhang P. 2011. Multiple genome alignments facilitate development of NPCL markers: A case study of tetrapod phylogeny focusing on the position of turtles. Mol Biol Evol. 28(12):3237-3252.
    • (2011) Mol Biol Evol. , vol.28 , Issue.12 , pp. 3237-3252
    • Shen, X.-X.1    Liang, D.2    Wen, J.-Z.3    Zhang, P.4
  • 99
    • 84930724882 scopus 로고    scopus 로고
    • Data from: Multilocus phylogeny reveals unexpected diversification patterns in Asian Wolf Snakes (genus Lycodon)
    • Siler C, Brown RM, Oliveros CH, Santanen A. 2013. Data from: Multilocus phylogeny reveals unexpected diversification patterns in Asian Wolf Snakes (genus Lycodon). Dryad Data Repository. doi:10. 5061/dryad. cp6gg.
    • (2013) Dryad Data Repository.
    • Siler, C.1    Brown, R.M.2    Oliveros, C.H.3    Santanen, A.4
  • 100
    • 84876304710 scopus 로고    scopus 로고
    • Multilocus phylogeny reveals unexpected diversification patterns in Asian wolf snakes (genus Lycodon)
    • Siler CD, Oliveros CH, Santanen A, Brown RM. 2013. Multilocus phylogeny reveals unexpected diversification patterns in Asian wolf snakes (genus Lycodon). Zool Scr. 42(3):262-277.
    • (2013) Zool Scr. , vol.42 , Issue.3 , pp. 262-277
    • Siler, C.D.1    Oliveros, C.H.2    Santanen, A.3    Brown, R.M.4
  • 101
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21):2688-2690.
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 102
    • 12044252586 scopus 로고
    • Distributions of tree comparison metrics-some new results
    • Steel MA, Penny D. 1993. Distributions of tree comparison metrics-some new results. Syst Biol. 42(2):126-141.
    • (1993) Syst Biol. , vol.42 , Issue.2 , pp. 126-141
    • Steel, M.A.1    Penny, D.2
  • 103
    • 26444567260 scopus 로고    scopus 로고
    • Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; The effect of data partitioning on resolving phylogenies in a Bayesian framework
    • Strugnell J, Norman M, Jackson J, Drummond AJ, Cooper A. 2005. Molecular phylogeny of coleoid cephalopods (Mollusca: Cephalopoda) using a multigene approach; the effect of data partitioning on resolving phylogenies in a Bayesian framework. Mol Phylogenet Evol. 37(2):426-441.
    • (2005) Mol Phylogenet Evol , vol.37 , Issue.2 , pp. 426-441
    • Strugnell, J.1    Norman, M.2    Jackson, J.3    Drummond, A.J.4    Cooper, A.5
  • 104
    • 30344457592 scopus 로고    scopus 로고
    • Model selection in phylogenetics
    • Sullivan J, Joyce P. 2005. Model selection in phylogenetics. Annu Rev Ecol Evol Syst. 36(1):445-466.
    • (2005) Annu Rev Ecol Evol Syst. , vol.36 , Issue.1 , pp. 445-466
    • Sullivan, J.1    Joyce, P.2
  • 105
    • 0002618746 scopus 로고    scopus 로고
    • Are guinea pigs rodents the importance of adequate models in molecular phylogenetics
    • Sullivan J, Swofford D. 1997. Are guinea pigs rodents The importance of adequate models in molecular phylogenetics. J Mamm Evol. 4(2):77-86.
    • (1997) J Mamm Evol. , vol.4 , Issue.2 , pp. 77-86
    • Sullivan, J.1    Swofford, D.2
  • 106
    • 84873155984 scopus 로고    scopus 로고
    • Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes: A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses
    • Tao W, Mayden RL, He S. 2013. Remarkable phylogenetic resolution of the most complex clade of Cyprinidae (Teleostei: Cypriniformes): A proof of concept of homology assessment and partitioning sequence data integrated with mixed model Bayesian analyses. Mol Phylogenet Evol. 66(3):603-616.
    • (2013) Mol Phylogenet Evol. , vol.66 , Issue.3 , pp. 603-616
    • Tao, W.1    Mayden, R.L.2    He, S.3
  • 107
    • 84930708604 scopus 로고    scopus 로고
    • Data from: Large-scale phylogeny of chameleons suggests African origins and rapid Eocene radiation
    • Tolley KA, Townsend TM, Vences M. 2013a. Data from: Large-scale phylogeny of chameleons suggests African origins and rapid Eocene radiation. Dryad Data Repository. doi:10. 5061/dryad. 11350.
    • (2013) Dryad Data Repository.
    • Tolley, K.A.1    Townsend, T.M.2    Vences, M.3
  • 108
    • 84878242762 scopus 로고    scopus 로고
    • Large-scale phylogeny of chameleons suggests African origins and Eocene diversification
    • Tolley KA, Townsend TM, Vences M. 2013b. Large-scale phylogeny of chameleons suggests African origins and Eocene diversification. Proc R Soc Lond B Biol Sci. 280(1759)
    • (2013) Proc R Soc Lond B Biol Sci. , vol.280 , Issue.1759
    • Tolley, K.A.1    Townsend, T.M.2    Vences, M.3
  • 109
    • 84930720890 scopus 로고    scopus 로고
    • Data from: Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea
    • Unmack PJ, Allen GR, Johnson JB. 2013a. Data from: Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea. Dryad Data Repository. doi:10. 5061/dryad. qq846.
    • (2013) Dryad Data Repository
    • Unmack, P.J.1    Allen, G.R.2    Johnson, J.B.3
  • 110
    • 84873023180 scopus 로고    scopus 로고
    • Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea
    • Unmack PJ, Allen GR, Johnson JB. 2013b. Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea. Mol Phylogenet Evol. 67(1):15-27.
    • (2013) Mol Phylogenet Evol. , vol.67 , Issue.1 , pp. 15-27
    • Unmack, P.J.1    Allen, G.R.2    Johnson, J.B.3
  • 111
    • 84865281081 scopus 로고    scopus 로고
    • The evolution of pharyngognathy: A phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond
    • Wainwright PC, Smith WL, Price SA, Tang KL, Sparks JS, Ferry LA, Kuhn KL, Eytan RI, Near TJ. 2012. The evolution of pharyngognathy: A phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond. Syst Biol. 61(6):1001-1027.
    • (2012) Syst Biol. , vol.61 , Issue.6 , pp. 1001-1027
    • Wainwright, P.C.1    Smith, W.L.2    Price, S.A.3    Tang, K.L.4    Sparks, J.S.5    Ferry, L.A.6    Kuhn, K.L.7    Eytan, R.I.8    Near, T.J.9
  • 112
    • 84900421843 scopus 로고    scopus 로고
    • Data from: The evolution of pharyngognathy: A phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond
    • Wainwright PC, Smith WL, Price SA, Tang KL, Sparks JS, Ferry LA, Kuhn KL, Near TJ. 2012. Data from: The evolution of pharyngognathy: A phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond. Dryad Data Repository. doi:10. 5061/dryad. 5h951h04.
    • (2012) Dryad Data Repository.
    • Wainwright, P.C.1    Smith, W.L.2    Price, S.A.3    Tang, K.L.4    Sparks, J.S.5    Ferry, L.A.6    Kuhn, K.L.7    Near, T.J.8
  • 113
    • 77950850793 scopus 로고    scopus 로고
    • Phylogeny and biogeography of dolichoderine ants: Effects of data partitioning and relict taxa on historical inference
    • Ward PS, Brady SG, Fisher BL, Schultz TR. 2010. Phylogeny and biogeography of dolichoderine ants: effects of data partitioning and relict taxa on historical inference. Syst Biol. 59(3):342-362.
    • (2010) Syst Biol. , vol.59 , Issue.3 , pp. 342-362
    • Ward, P.S.1    Brady, S.G.2    Fisher, B.L.3    Schultz, T.R.4
  • 114
    • 84930692947 scopus 로고    scopus 로고
    • Data from: Multilocus phylogeny and Bayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards
    • Welton LJ, Siler CD, Oaks JR, Diesmos AC, Brown RM. 2013a. Data from: Multilocus phylogeny and Bayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards. Dryad Data Repository. doi:10. 5061/dryad. m0n61.
    • (2013) Dryad Data Repository.
    • Welton, L.J.1    Siler, C.D.2    Oaks, J.R.3    Diesmos, A.C.4    Brown, R.M.5
  • 115
    • 84879555727 scopus 로고    scopus 로고
    • Multilocus phylogeny and Bayesian estimates of speciesboundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards
    • Welton LJ, Siler CD, Oaks JR, Diesmos AC, Brown RM. 2013b. Multilocus phylogeny and Bayesian estimates of speciesboundaries reveal hidden evolutionary relationships and cryptic diversity in Southeast Asian monitor lizards. Mol Ecol. 22(13):3495-3510.
    • (2013) Mol Ecol. , vol.22 , Issue.13 , pp. 3495-3510
    • Welton, L.J.1    Siler, C.D.2    Oaks, J.R.3    Diesmos, A.C.4    Brown, R.M.5
  • 116
    • 84873603201 scopus 로고    scopus 로고
    • Bayesian selection of nucleotide substitution models and their site assignments
    • Wu C-H, Suchard MA, Drummond AJ. 2013. Bayesian selection of nucleotide substitution models and their site assignments. Mol Biol Evol. 30(3):669-688.
    • (2013) Mol Biol Evol. , vol.30 , Issue.3 , pp. 669-688
    • Wu, C.-H.1    Suchard, M.A.2    Drummond, A.J.3
  • 117
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
    • Yang Z, Goldman N, Friday A. 1994. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Mol Biol Evol. 11(2):316-324.
    • (1994) Mol Biol Evol. , vol.11 , Issue.2 , pp. 316-324
    • Yang, Z.1    Goldman, N.2    Friday, A.3
  • 118
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N, Pedersen A-MK. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155(1):431-449.
    • (2000) Genetics , vol.155 , Issue.1 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    A-Mk, P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.