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Volumn , Issue 87, 2014, Pages

Magnetic tweezers for the measurement of twist and torque

Author keywords

Bioengineering; DNA; Freely orbiting magnetic tweezers; Issue 87; Magnetic torque tweezers; Magnetic tweezers; Single molecule techniques; Torque; Twist

Indexed keywords


EID: 84930482561     PISSN: 1940087X     EISSN: None     Source Type: Journal    
DOI: 10.3791/51503     Document Type: Article
Times cited : (19)

References (45)
  • 2
    • 85015087906 scopus 로고    scopus 로고
    • Ten years of tension: Single-molecule DNA mechanics
    • doi:10.1038/nature01405 nature01405 [pii]
    • Bustamante, C., Bryant, Z., & Smith, S. B. Ten years of tension: single-molecule DNA mechanics. Nature.421, 423-427, doi:10.1038/nature01405 nature01405 [pii] (2003).
    • (2003) Nature , vol.421 , pp. 423-427
    • Bustamante, C.1    Bryant, Z.2    Smith, S.B.3
  • 3
    • 44449087047 scopus 로고    scopus 로고
    • Single-molecule force spectroscopy: Optical tweezers, magnetic tweezers and atomic force microscopy
    • doi:nmeth.1218 [pii] 10.1038/nmeth.1218
    • Neuman, K. C., & Nagy, A. Single-molecule force spectroscopy: optical tweezers, magnetic tweezers and atomic force microscopy. Nature methods. 5, 491-505, doi:nmeth.1218 [pii] 10.1038/nmeth.1218 (2008).
    • (2008) Nature methods , vol.5 , pp. 491-505
    • Neuman, K.C.1    Nagy, A.2
  • 4
    • 68949105584 scopus 로고    scopus 로고
    • Quantitative modeling and optimization of magnetic tweezers
    • doi:S0006-3495(09)00788-7 [pii] 10.1016/j.bpj.2009.03.055
    • Lipfert, J., Hao, X., & Dekker, N. H. Quantitative modeling and optimization of magnetic tweezers. Biophysical journal. 96, 5040-5049, doi:S0006-3495(09)00788-7 [pii] 10.1016/j.bpj.2009.03.055 (2009).
    • (2009) Biophysical journal , vol.96 , pp. 5040-5049
    • Lipfert, J.1    Hao, X.2    Dekker, N.H.3
  • 5
    • 54749117023 scopus 로고    scopus 로고
    • Multiplexed single-molecule measurements with magnetic tweezers
    • Ribeck, N., & Saleh, O. A. Multiplexed single-molecule measurements with magnetic tweezers. The Review of scientific instruments. 79, 094301 (2008).
    • (2008) The Review of scientific instruments , vol.79 , pp. 094301
    • Ribeck, N.1    Saleh, O.A.2
  • 6
    • 83655192461 scopus 로고    scopus 로고
    • Highly parallel magnetic tweezers by targeted DNA tethering
    • doi:10.1021/nl203299e
    • De Vlaminck, I. et al. Highly parallel magnetic tweezers by targeted DNA tethering. Nano letters. 11, 5489-5493, doi:10.1021/nl203299e (2011).
    • (2011) Nano letters , vol.11 , pp. 5489-5493
    • De Vlaminck, I.1
  • 7
    • 77955629227 scopus 로고    scopus 로고
    • Cellular strategies for regulating DNA supercoiling: A single-molecule perspective
    • doi:10.1016/j.cell.2010.08.001
    • Koster, D. A., Crut, A., Shuman, S., Bjornsti, M. A., & Dekker, N. H. Cellular strategies for regulating DNA supercoiling: a single-molecule perspective. Cell. 142, 519-530, doi:10.1016/j.cell.2010.08.001 (2010).
    • (2010) Cell , vol.142 , pp. 519-530
    • Koster, D.A.1    Crut, A.2    Shuman, S.3    Bjornsti, M.A.4    Dekker, N.H.5
  • 8
    • 84871513032 scopus 로고    scopus 로고
    • Studying genomic processes at the single-molecule level: Introducing the tools and applications
    • doi:10.1038/nrg3316
    • Dulin, D., Lipfert, J., Moolman, M. C., & Dekker, N. H. Studying genomic processes at the single-molecule level: introducing the tools and applications. Nature reviews. Genetics. 14, 9-22, doi:10.1038/nrg3316 (2013).
    • (2013) Nature reviews. Genetics , vol.14 , pp. 9-22
    • Dulin, D.1    Lipfert, J.2    Moolman, M.C.3    Dekker, N.H.4
  • 9
    • 38349134548 scopus 로고    scopus 로고
    • Common variation in the C-terminal region of the fibrinogen beta-chain: Effects on fibrin structure, fibrinolysis and clot rigidity
    • doi:10.1182/blood-2007-05-091231
    • Ajjan, R. et al. Common variation in the C-terminal region of the fibrinogen beta-chain: effects on fibrin structure, fibrinolysis and clot rigidity. Blood. 111, 643-650, doi:10.1182/blood-2007-05-091231 (2008).
    • (2008) Blood , vol.111 , pp. 643-650
    • Ajjan, R.1
  • 10
    • 38349010823 scopus 로고    scopus 로고
    • Mechano-coupling and regulation of contractility by the vinculin tail domain
    • doi:10.1529/biophysj.107.108472
    • Mierke, C. T. et al. Mechano-coupling and regulation of contractility by the vinculin tail domain. Biophysical journal. 94, 661-670, doi:10.1529/biophysj.107.108472 (2008).
    • (2008) Biophysical journal , vol.94 , pp. 661-670
    • Mierke, C.T.1
  • 11
    • 34249103354 scopus 로고    scopus 로고
    • Magnetic tweezers measurement of the bond lifetime-force behavior of the IgG-protein A specific molecular interaction
    • doi:10.1021/ja071215c
    • Shang, H., & Lee, G. U. Magnetic tweezers measurement of the bond lifetime-force behavior of the IgG-protein A specific molecular interaction. Journal of the American Chemical Society. 129, 6640-6646, doi:10.1021/ja071215c (2007).
    • (2007) Journal of the American Chemical Society , vol.129 , pp. 6640-6646
    • Shang, H.1    Lee, G.U.2
  • 12
    • 18144404633 scopus 로고    scopus 로고
    • The application of magnetic force differentiation for the measurement of the affinity of peptide libraries
    • Shang H, K. P., et al. The application of magnetic force differentiation for the measurement of the affinity of peptide libraries. J Magn Magn Mater. 293, 382-388 (2005).
    • (2005) J Magn Magn Mater , vol.293 , pp. 382-388
    • Shang, H.K.P.1
  • 13
    • 0034672123 scopus 로고    scopus 로고
    • Implementation of force differentiation in the immunoassay
    • doi:10.1006/abio.2000.4844
    • Lee, G. U., Metzger, S., Natesan, M., Yanavich, C., & Dufrene, Y. F. Implementation of force differentiation in the immunoassay. Analytical biochemistry. 287, 261-271, doi:10.1006/abio.2000.4844 (2000).
    • (2000) Analytical biochemistry , vol.287 , pp. 261-271
    • Lee, G.U.1    Metzger, S.2    Natesan, M.3    Yanavich, C.4    Dufrene, Y.F.5
  • 16
    • 34347244955 scopus 로고    scopus 로고
    • Magnetic tweezers in cell biology
    • doi:10.1016/S0091-679X(07)83020-2
    • Tanase, M., Biais, N., & Sheetz, M. Magnetic tweezers in cell biology. Methods in cell biology. 83, 473-493, doi:10.1016/S0091-679X(07)83020-2 (2007).
    • (2007) Methods in cell biology , vol.83 , pp. 473-493
    • Tanase, M.1    Biais, N.2    Sheetz, M.3
  • 17
    • 0344915170 scopus 로고    scopus 로고
    • Measurement of local viscoelasticity and forces in living cells by magnetic tweezers
    • doi:10.1016/S0006-3495(99)77225-5
    • Bausch, A. R., Moller, W., & Sackmann, E. Measurement of local viscoelasticity and forces in living cells by magnetic tweezers. Biophysical journal. 76, 573-579, doi:10.1016/S0006-3495(99)77225-5 (1999).
    • (1999) Biophysical journal , vol.76 , pp. 573-579
    • Bausch, A.R.1    Moller, W.2    Sackmann, E.3
  • 18
    • 73949161113 scopus 로고    scopus 로고
    • Single-molecule magnetic tweezers studies of type IB topoisomerases
    • Lipfert, J., Koster, D. A., Vilfan, I. D., Hage, S., & Dekker, N. H. Single-molecule magnetic tweezers studies of type IB topoisomerases. Methods Mol Biol. 582, 71-89 (2009).
    • (2009) Methods Mol Biol , vol.582 , pp. 71-89
    • Lipfert, J.1    Koster, D.A.2    Vilfan, I.D.3    Hage, S.4    Dekker, N.H.5
  • 20
    • 0036111913 scopus 로고    scopus 로고
    • Magnetic tweezers: Micromanipulation and force measurement at the molecular level
    • Gosse, C., & Croquette, V. Magnetic tweezers: micromanipulation and force measurement at the molecular level. Biophysical journal. 82, 3314-3329 (2002).
    • (2002) Biophysical journal , vol.82 , pp. 3314-3329
    • Gosse, C.1    Croquette, V.2
  • 21
    • 80052404576 scopus 로고    scopus 로고
    • Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids
    • doi:ncomms1450 [pii] 10.1038/ncomms1450
    • Lipfert, J., Wiggin, M., Kerssemakers, J. W., Pedaci, F., & Dekker, N. H. Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids. Nature communications. 2, 439, doi:ncomms1450 [pii] 10.1038/ncomms1450 (2011).
    • (2011) Nature communications , vol.2 , pp. 439
    • Lipfert, J.1    Wiggin, M.2    Kerssemakers, J.W.3    Pedaci, F.4    Dekker, N.H.5
  • 22
    • 65249161305 scopus 로고    scopus 로고
    • Magnetic tweezers measurement of single molecule torque
    • Celedon, A. et al. Magnetic tweezers measurement of single molecule torque. Nano letters. 9, 1720-1725 (2009).
    • (2009) Nano letters , vol.9 , pp. 1720-1725
    • Celedon, A.1
  • 23
    • 80655125709 scopus 로고    scopus 로고
    • A method to track rotational motion for use in single-molecule biophysics
    • doi:10.1063/1.3650461
    • Lipfert, J., Kerssemakers, J. J., Rojer, M., & Dekker, N. H. A method to track rotational motion for use in single-molecule biophysics. The Review of scientific instruments. 82, 103707, doi:10.1063/1.3650461 (2011).
    • (2011) The Review of scientific instruments , vol.82 , pp. 103707
    • Lipfert, J.1    Kerssemakers, J.J.2    Rojer, M.3    Dekker, N.H.4
  • 24
    • 78649709362 scopus 로고    scopus 로고
    • Magnetic torque tweezers: Measuring torsional stiffness in DNA and RecA-DNA filaments
    • Lipfert, J., Kerssemakers, J. W., Jager, T., & Dekker, N. H. Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments. Nature methods. 7, 977-980 (2010).
    • (2010) Nature methods , vol.7 , pp. 977-980
    • Lipfert, J.1    Kerssemakers, J.W.2    Jager, T.3    Dekker, N.H.4
  • 25
    • 61349129512 scopus 로고    scopus 로고
    • Measurement of the torque on a single stretched and twisted DNA using magnetic tweezers
    • Mosconi, F., Allemand, J. F., Bensimon, D., & Croquette, V. Measurement of the torque on a single stretched and twisted DNA using magnetic tweezers. Physical review letters. 102, 078301 (2009).
    • (2009) Physical review letters , vol.102 , pp. 078301
    • Mosconi, F.1    Allemand, J.F.2    Bensimon, D.3    Croquette, V.4
  • 26
    • 79953666191 scopus 로고    scopus 로고
    • Soft magnetic tweezers: A proof of principle
    • doi:034302 10.1063/1.3531959
    • Mosconi, F., Allemand, J. F., & Croquette, V. Soft magnetic tweezers: A proof of principle. Review of Scientific Instruments. 82 (12), doi:034302 10.1063/1.3531959 (2011).
    • (2011) Review of Scientific Instruments , vol.82 , Issue.12
    • Mosconi, F.1    Allemand, J.F.2    Croquette, V.3
  • 27
    • 83655192457 scopus 로고    scopus 로고
    • Direct mechanical measurements reveal the material properties of three-dimensional DNA origami
    • doi:10.1021/nl203503s
    • Kauert, D. J., Kurth, T., Liedl, T., & Seidel, R. Direct mechanical measurements reveal the material properties of three-dimensional DNA origami. Nano letters. 11, 5558-5563, doi:10.1021/nl203503s (2011).
    • (2011) Nano letters , vol.11 , pp. 5558-5563
    • Kauert, D.J.1    Kurth, T.2    Liedl, T.3    Seidel, R.4
  • 28
    • 77958197520 scopus 로고    scopus 로고
    • Quantitative Guidelines for Force Calibration through Spectral Analysis of Magnetic Tweezers Data
    • doi:10.1016/j.bpj.2010.06.008
    • Velthuis, A., Kerssemakers, J. W. J., Lipfert, J., & Dekker, N. H. Quantitative Guidelines for Force Calibration through Spectral Analysis of Magnetic Tweezers Data. Biophysical journal. 99, 1292-1302, doi:10.1016/j.bpj.2010.06.008 (2010).
    • (2010) Biophysical journal , vol.99 , pp. 1292-1302
    • Velthuis, A.1    Kerssemakers, J.W.J.2    Lipfert, J.3    Dekker, N.H.4
  • 29
    • 84857837586 scopus 로고    scopus 로고
    • Power spectrum and Allan variance methods for calibrating single-molecule video-tracking instruments
    • doi:10.1063/1.3687431
    • Lansdorp, B. M., & Saleh, O. A. Power spectrum and Allan variance methods for calibrating single-molecule video-tracking instruments. The Review of scientific instruments. 83, 025115, doi:10.1063/1.3687431 (2012).
    • (2012) The Review of scientific instruments , vol.83 , pp. 025115
    • Lansdorp, B.M.1    Saleh, O.A.2
  • 30
    • 0032937079 scopus 로고    scopus 로고
    • Estimating the persistence length of a worm-like chain molecule from force-extension measurements
    • Bouchiat, C. et al. Estimating the persistence length of a worm-like chain molecule from force-extension measurements. Biophysical journal. 76, 409-413 (1999).
    • (1999) Biophysical journal , vol.76 , pp. 409-413
    • Bouchiat, C.1
  • 31
    • 84881493788 scopus 로고    scopus 로고
    • Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament
    • doi:10.1093/nar/gkt425
    • Lee, M., Lipfert, J., Sanchez, H., Wyman, C., & Dekker, N. H. Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament. Nucleic acids research. 41, doi:10.1093/nar/gkt425 (2013).
    • (2013) Nucleic acids research , vol.41
    • Lee, M.1    Lipfert, J.2    Sanchez, H.3    Wyman, C.4    Dekker, N.H.5
  • 32
    • 84863856881 scopus 로고    scopus 로고
    • Electromagnetic torque tweezers: A versatile approach for measurement of single-molecule twist and torque
    • doi:10.1021/nl301330h
    • Janssen, X. J. et al. Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque. Nano letters. 12, 3634-3639, doi:10.1021/nl301330h (2012).
    • (2012) Nano letters , vol.12 , pp. 3634-3639
    • Janssen, X.J.1
  • 34
    • 80052404576 scopus 로고    scopus 로고
    • Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids
    • doi:ncomms1450 [pii] 10.1038/ncomms1450
    • Lipfert, J., Wiggin, M., Kerssemakers, J. W., Pedaci, F., & Dekker, N. H. Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids. Nat Commun. 2, 439, doi:ncomms1450 [pii] 10.1038/ncomms1450 (2011).
    • (2011) Nat Commun , vol.2 , pp. 439
    • Lipfert, J.1    Wiggin, M.2    Kerssemakers, J.W.3    Pedaci, F.4    Dekker, N.H.5
  • 35
    • 0034817343 scopus 로고    scopus 로고
    • Quantitative comparison of algorithms for tracking single fluorescent particles
    • Cheezum, M. K., Walker, W. F., & Guilford, W. H. Quantitative comparison of algorithms for tracking single fluorescent particles. Biophys. J. 81, 2378-2388 (2001).
    • (2001) Biophys. J. , vol.81 , pp. 2378-2388
    • Cheezum, M.K.1    Walker, W.F.2    Guilford, W.H.3
  • 36
    • 0023871621 scopus 로고
    • Tracking kinesin-driven movements with nanometre-scale precision
    • Gelles, J., Schnapp, B. J., & Sheetz, M. P. Tracking kinesin-driven movements with nanometre-scale precision. Nature. 331, 450-453 (1988).
    • (1988) Nature , vol.331 , pp. 450-453
    • Gelles, J.1    Schnapp, B.J.2    Sheetz, M.P.3
  • 37
    • 84861134836 scopus 로고    scopus 로고
    • Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification
    • doi:10.1016/j.bpj.2012.03.073
    • Loenhout, M. T., Kerssemakers, J. W., De Vlaminck, I., & Dekker, C. Non-bias-limited tracking of spherical particles, enabling nanometer resolution at low magnification. Biophysical journal. 102, 2362-2371, doi:10.1016/j.bpj.2012.03.073 (2012).
    • (2012) Biophysical journal , vol.102 , pp. 2362-2371
    • Loenhout, M.T.1    Kerssemakers, J.W.2    De Vlaminck, I.3    Dekker, C.4
  • 38
    • 76149108779 scopus 로고    scopus 로고
    • A high-resolution magnetic tweezer for single-molecule measurements
    • doi:gkp725 [pii] 10.1093/nar/gkp725
    • Kim, K., & Saleh, O. A. A high-resolution magnetic tweezer for single-molecule measurements. Nucleic acids research. 37, e136, doi:gkp725 [pii] 10.1093/nar/gkp725 (2009).
    • (2009) Nucleic acids research , vol.37
    • Kim, K.1    Saleh, O.A.2
  • 39
    • 33847672227 scopus 로고    scopus 로고
    • Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection
    • doi:nmeth1013 [pii] 10.1038/nmeth1013
    • Deufel, C., Forth, S., Simmons, C. R., Dejgosha, S., & Wang, M. D. Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection. Nature methods. 4, 223-225, doi:nmeth1013 [pii] 10.1038/nmeth1013 (2007).
    • (2007) Nature methods , vol.4 , pp. 223-225
    • Deufel, C.1    Forth, S.2    Simmons, C.R.3    Dejgosha, S.4    Wang, M.D.5
  • 40
    • 79951903196 scopus 로고    scopus 로고
    • Electron beam fabrication of birefringent microcylinders
    • doi:10.1021/nn1034108
    • Huang, Z., Pedaci, F., van Oene, M., Wiggin, M. J., & Dekker, N. H. Electron beam fabrication of birefringent microcylinders. ACS nano. 5, 1418-1427, doi:10.1021/nn1034108 (2011).
    • (2011) ACS nano , vol.5 , pp. 1418-1427
    • Huang, Z.1    Pedaci, F.2    van Oene, M.3    Wiggin, M.J.4    Dekker, N.H.5
  • 41
    • 18144444347 scopus 로고    scopus 로고
    • Optical torque wrench: Angular trapping, rotation, and torque detection of quartz microparticles
    • La Porta, A., & Wang, M. D. Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles. Physical review letters. 92, 190801 (2004).
    • (2004) Physical review letters , vol.92 , pp. 190801
    • La Porta, A.1    Wang, M.D.2
  • 42
    • 33747461393 scopus 로고    scopus 로고
    • DNA overwinds when stretched
    • doi:nature04974 [pii] 10.1038/nature04974
    • Gore, J. et al. DNA overwinds when stretched. Nature. 442, 836-839, doi:nature04974 [pii] 10.1038/nature04974 (2006).
    • (2006) Nature , vol.442 , pp. 836-839
    • Gore, J.1
  • 43
    • 84862615458 scopus 로고    scopus 로고
    • Recent developments in single-molecule DNA mechanics
    • doi:10.1016/j.sbi.2012.04.007
    • Bryant, Z., Oberstrass, F. C., & Basu, A. Recent developments in single-molecule DNA mechanics. Curr Opin Struct Biol. 22, 304-312, doi:10.1016/j.sbi.2012.04.007 (2012).
    • (2012) Curr Opin Struct Biol , vol.22 , pp. 304-312
    • Bryant, Z.1    Oberstrass, F.C.2    Basu, A.3
  • 45
    • 84877773758 scopus 로고    scopus 로고
    • Torque measurement at the single-molecule level
    • doi:10.1146/annurev-biophys-083012-130412
    • Forth, S., Sheinin, M. Y., Inman, J., & Wang, M. D. Torque measurement at the single-molecule level. Annu Rev Biophys. 42, 583-604, doi:10.1146/annurev-biophys-083012-130412 (2013).
    • (2013) Annu Rev Biophys , vol.42 , pp. 583-604
    • Forth, S.1    Sheinin, M.Y.2    Inman, J.3    Wang, M.D.4


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