메뉴 건너뛰기




Volumn 5, Issue 11, 2015, Pages 2234-2251

Divergence thresholds and divergent biodiversity estimates: Can metabarcoding reliably describe zooplankton communities?

Author keywords

nSSU; Biodiversity; High throughput sequencing; Metabarcoding; Mock community; Zooplankton

Indexed keywords

METAZOA; OTUS;

EID: 84930383955     PISSN: None     EISSN: 20457758     Source Type: Journal    
DOI: 10.1002/ece3.1485     Document Type: Article
Times cited : (95)

References (63)
  • 2
    • 78751642113 scopus 로고    scopus 로고
    • Evolution of the nuclear ribosomal DNA intergenic spacer in four species of the Daphnia pulex complex
    • Ambrose, C. D., and T. J. Crease. 2011. Evolution of the nuclear ribosomal DNA intergenic spacer in four species of the Daphnia pulex complex. BMC Genet. 12:13.
    • (2011) BMC Genet. , vol.12 , pp. 13
    • Ambrose, C.D.1    Crease, T.J.2
  • 3
    • 33645113551 scopus 로고    scopus 로고
    • Monitoring the mode and tempo of concerted evolution in Drosophila melanogaster rDNA locus
    • Averbeck, K. T., and T. H. Eickbush. 2005. Monitoring the mode and tempo of concerted evolution in Drosophila melanogaster rDNA locus. Genetics 171:1837-1846.
    • (2005) Genetics , vol.171 , pp. 1837-1846
    • Averbeck, K.T.1    Eickbush, T.H.2
  • 4
    • 84872936182 scopus 로고    scopus 로고
    • Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study
    • Bachy, C., J. R. Dolan, P. López-García, P. Deschamps, and D. Moreira. 2013. Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. ISME J. 7:244-255.
    • (2013) ISME J. , vol.7 , pp. 244-255
    • Bachy, C.1    Dolan, J.R.2    López-García, P.3    Deschamps, P.4    Moreira, D.5
  • 5
    • 79551476785 scopus 로고    scopus 로고
    • Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
    • Behnke, A., M. Engel, R. Christen, M. Nebel, R. R. Klein, and T. Stoeck. 2011. Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions. Environ. Microbiol. 13:340-349.
    • (2011) Environ. Microbiol. , vol.13 , pp. 340-349
    • Behnke, A.1    Engel, M.2    Christen, R.3    Nebel, M.4    Klein, R.R.5    Stoeck, T.6
  • 7
    • 84859574463 scopus 로고    scopus 로고
    • Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing
    • Blaalid, R., T. Carlsen, S. Kumar, R. Halvorsen, K. I. Ugland, G. Fontana, et al. 2012. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing. Mol. Ecol. 21:1897-1908.
    • (2012) Mol. Ecol. , vol.21 , pp. 1897-1908
    • Blaalid, R.1    Carlsen, T.2    Kumar, S.3    Halvorsen, R.4    Ugland, K.I.5    Fontana, G.6
  • 8
    • 84869417474 scopus 로고    scopus 로고
    • Comparing clustering and pre-processing in taxonomy analysis
    • Bonder, M. J., S. Abeln, E. Zaura, and B. W. Brandt. 2012. Comparing clustering and pre-processing in taxonomy analysis. Bioinformatics 28:2891-2897.
    • (2012) Bioinformatics , vol.28 , pp. 2891-2897
    • Bonder, M.J.1    Abeln, S.2    Zaura, E.3    Brandt, B.W.4
  • 9
    • 77956094384 scopus 로고    scopus 로고
    • Freshwater Perkinsea and marine-freshwater colonisations revealed by pyrsoequencing and phylogeny of environmental rDNA
    • Brate, J., R. Logares, C. Berney, D. Kristofer Ree, D. Klaveness, K. S. Jakobsen, and K. Shalchian-Tabrizi. 2010. Freshwater Perkinsea and marine-freshwater colonisations revealed by pyrsoequencing and phylogeny of environmental rDNA. ISME J, 4:1144-1153.
    • (2010) ISME J , vol.4 , pp. 1144-1153
    • Brate, J.1    Logares, R.2    Berney, C.3    Kristofer Ree, D.4    Klaveness, D.5    Jakobsen, K.S.6    Shalchian-Tabrizi, K.7
  • 10
    • 70349482733 scopus 로고    scopus 로고
    • 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    • Buée, M., M. Reich, C. Murat, E. Morin, R. H. Nilsson, S. Uroz, et al. 2009. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol. 184:449-456.
    • (2009) New Phytol. , vol.184 , pp. 449-456
    • Buée, M.1    Reich, M.2    Murat, C.3    Morin, E.4    Nilsson, R.H.5    Uroz, S.6
  • 11
    • 0033281060 scopus 로고    scopus 로고
    • Analysis of the primary sequence and secondary structure of the unusually long SSU rRNA of the soil bug, Armadillidium vulgare
    • Choe, C. P., J. M. Hancock, U. W. Hwang, and W. Kim. 1999. Analysis of the primary sequence and secondary structure of the unusually long SSU rRNA of the soil bug, Armadillidium vulgare. J. Mol. Evol. 49:798-805.
    • (1999) J. Mol. Evol. , vol.49 , pp. 798-805
    • Choe, C.P.1    Hancock, J.M.2    Hwang, U.W.3    Kim, W.4
  • 12
    • 0031787983 scopus 로고    scopus 로고
    • The origin and evolution of variable region helices in V4 and V7 of the small subunit ribosomal RNA of branchiopod crustaceans
    • Crease, T. J., and D. J. Taylor. 1998. The origin and evolution of variable region helices in V4 and V7 of the small subunit ribosomal RNA of branchiopod crustaceans. Mol. Biol. Evol. 15:1430-1446.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1430-1446
    • Crease, T.J.1    Taylor, D.J.2
  • 13
    • 84907982044 scopus 로고    scopus 로고
    • From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity
    • Cristescu, M. E. 2014. From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity. Trends Ecol. Evol. 29:566-571.
    • (2014) Trends Ecol. Evol. , vol.29 , pp. 566-571
    • Cristescu, M.E.1
  • 14
    • 84864546249 scopus 로고    scopus 로고
    • Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454-pyrosequencing
    • Davey, M. L., E. Heegaard, R. Halvorsen, M. Ohlson, and H. Kauserud. 2012. Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454-pyrosequencing. New Phytol. 195:844-856.
    • (2012) New Phytol. , vol.195 , pp. 844-856
    • Davey, M.L.1    Heegaard, E.2    Halvorsen, R.3    Ohlson, M.4    Kauserud, H.5
  • 15
    • 84905440026 scopus 로고    scopus 로고
    • Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (Radiolarians) assessed by high-throughput sequencing
    • Decelle, J., S. Romac, E. Sasaki, F. Not, and F. Mahé. 2014. Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (Radiolarians) assessed by high-throughput sequencing. PLoS ONE 9:e104297.
    • (2014) PLoS ONE , vol.9 , pp. e104297
    • Decelle, J.1    Romac, S.2    Sasaki, E.3    Not, F.4    Mahé, F.5
  • 16
    • 84860238372 scopus 로고    scopus 로고
    • Using high throughput sequencing to explore the biodiversity in oral bacterial communities
    • Diaz, P. I., A. K. Dupuy, L. Abusleme, B. Reese, C. Obergfell, L. Choquette, et al. 2012. Using high throughput sequencing to explore the biodiversity in oral bacterial communities. Mol. Oral Microbiol. 27:182-201.
    • (2012) Mol. Oral Microbiol. , vol.27 , pp. 182-201
    • Diaz, P.I.1    Dupuy, A.K.2    Abusleme, L.3    Reese, B.4    Obergfell, C.5    Choquette, L.6
  • 17
    • 84860616717 scopus 로고    scopus 로고
    • Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia
    • Eagle, S. H. C., and T. J. Crease. 2012. Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia. Mob. DNA 3:e4.
    • (2012) Mob. DNA , vol.3 , pp. e4
    • Eagle, S.H.C.1    Crease, T.J.2
  • 18
    • 84884904719 scopus 로고    scopus 로고
    • UPARSE: highly accurate OTU sequences from microbial amplicon reads
    • Edgar, R. C. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10:996-998.
    • (2013) Nat. Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 20
    • 84884191022 scopus 로고    scopus 로고
    • 454 Pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes
    • Egge, E., L. Bittner, T. Andersen, S. Audic, C. de Vargas, and B. Edvardsen. 2013. 454 Pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS ONE 8:e74371.
    • (2013) PLoS ONE , vol.8 , pp. e74371
    • Egge, E.1    Bittner, L.2    Andersen, T.3    Audic, S.4    de Vargas, C.5    Edvardsen, B.6
  • 21
    • 84930383193 scopus 로고    scopus 로고
    • Towards accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods
    • THIS ISSUE.
    • Flynn, J. M., E. A. Brown, F. J. J. Chain, H. J. MacIsaac, and M. E. Cristescu. 2015. Towards accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods. Ecol. Evol. THIS ISSUE.
    • (2015) Ecol. Evol.
    • Flynn, J.M.1    Brown, E.A.2    Chain, F.J.J.3    MacIsaac, H.J.4    Cristescu, M.E.5
  • 23
    • 84875411396 scopus 로고    scopus 로고
    • Assessing the consequences of denoising marker-based metagenomic data
    • Gaspar, J. M., and W.K. Thomas. 2013. Assessing the consequences of denoising marker-based metagenomic data. PLoS ONE 8:e60458.
    • (2013) PLoS ONE , vol.8 , pp. e60458
    • Gaspar, J.M.1    Thomas, W.K.2
  • 24
    • 0012014083 scopus 로고    scopus 로고
    • Some unusual small-subunit ribosomal RNA sequences of metazoans.
    • American Museum Novitates Number 3337
    • Giribet, G., and W. Wheeler. 2001. Some unusual small-subunit ribosomal RNA sequences of metazoans. American Museum Novitates Number 3337, 1-16.
    • (2001) , pp. 1-16
    • Giribet, G.1    Wheeler, W.2
  • 25
    • 84895735742 scopus 로고    scopus 로고
    • Characterisation of the 18S rRNA gene for designing universal eukaryote specific primers
    • Hadziavdic, K., K. Lekang, A. Lanzen, I. Jonassen, E. M. Thompson, and C. Troedsson. 2014. Characterisation of the 18S rRNA gene for designing universal eukaryote specific primers. PLoS ONE 9:e87624.
    • (2014) PLoS ONE , vol.9 , pp. e87624
    • Hadziavdic, K.1    Lekang, K.2    Lanzen, A.3    Jonassen, I.4    Thompson, E.M.5    Troedsson, C.6
  • 26
    • 79952001955 scopus 로고    scopus 로고
    • Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering
    • Hao, X., R. Jiang, and T. Chen. 2011. Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering. Bioinformatics 27:611-618.
    • (2011) Bioinformatics , vol.27 , pp. 611-618
    • Hao, X.1    Jiang, R.2    Chen, T.3
  • 27
    • 84898539689 scopus 로고    scopus 로고
    • Comparisons of the fungal and protistan communities among different marine sponge holobionts by pyrosequencing
    • He, L., F. Liu, V. Karuppiah, Y. Ren, and Z. Li. 2014. Comparisons of the fungal and protistan communities among different marine sponge holobionts by pyrosequencing. Microbiol. Ecol. 67:951-961.
    • (2014) Microbiol. Ecol. , vol.67 , pp. 951-961
    • He, L.1    Liu, F.2    Karuppiah, V.3    Ren, Y.4    Li, Z.5
  • 31
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse, S. M., D. M. Welch, H. G. Morrison, and M. L. Sogin. 2010. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ. Microbiol. 12:1889-1898.
    • (2010) Environ. Microbiol. , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 32
    • 84869886141 scopus 로고    scopus 로고
    • New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
    • Ihrmark, K., I. T. M. Bödeker, K. Cruz-Martinez, H. Friberg, A. Kubartova, J. Schenck, et al. 2012. New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities. FEMS Microb. Ecol. 82:666-677.
    • (2012) FEMS Microb. Ecol. , vol.82 , pp. 666-677
    • Ihrmark, K.1    Bödeker, I.T.M.2    Cruz-Martinez, K.3    Friberg, H.4    Kubartova, A.5    Schenck, J.6
  • 33
    • 63849198290 scopus 로고    scopus 로고
    • Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
    • James, S. A., M. J. T. O'Kelly, D. M. Carter, R. M. Davey, A. van Oudenaarden, and I. N. Roberts. 2009. Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res. 19:626-635.
    • (2009) Genome Res. , vol.19 , pp. 626-635
    • James, S.A.1    O'Kelly, M.J.T.2    Carter, D.M.3    Davey, R.M.4    van Oudenaarden, A.5    Roberts, I.N.6
  • 34
    • 79951983346 scopus 로고    scopus 로고
    • "Sight-unseen" detection of rare aquatic species using environmental DNA
    • Jerde, C. L., A. R. Mahon, L. Chadderton, and D. M. Lodge. 2011. "Sight-unseen" detection of rare aquatic species using environmental DNA. Conserv. Lett. 4:150-157.
    • (2011) Conserv. Lett. , vol.4 , pp. 150-157
    • Jerde, C.L.1    Mahon, A.R.2    Chadderton, L.3    Lodge, D.M.4
  • 35
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT Multiple sequence alignment software version 7: improvements in performance and usability
    • Katoh, K., and D. M. Standley. 2013. MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30:772-780.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 37
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
    • Kunin, V., A. Engelbrektson, H. Ochman, and P. Hugenholtz. 2010. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ. Microbiol. 12:118-123.
    • (2010) Environ. Microbiol. , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 38
    • 84892384487 scopus 로고    scopus 로고
    • Next generation sequencing reveals the hidden diversity of zooplankton assemblages
    • Lindeque, P. K., H. E. Parry, R. A. Harmer, P. J. Somerfield, and A. Atkinson. 2013. Next generation sequencing reveals the hidden diversity of zooplankton assemblages. PLoS ONE 8:e81327.
    • (2013) PLoS ONE , vol.8 , pp. e81327
    • Lindeque, P.K.1    Parry, H.E.2    Harmer, R.A.3    Somerfield, P.J.4    Atkinson, A.5
  • 39
    • 84885642542 scopus 로고    scopus 로고
    • Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
    • Lindner, D. L., T. Carlsen, R. H. Nilsson, M. Davey, T. Schumacher, and H. Kauserud. 2013. Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. Ecol. Evol. 3:1751-1764.
    • (2013) Ecol. Evol. , vol.3 , pp. 1751-1764
    • Lindner, D.L.1    Carlsen, T.2    Nilsson, R.H.3    Davey, M.4    Schumacher, T.5    Kauserud, H.6
  • 40
    • 84907710189 scopus 로고    scopus 로고
    • Swarm: robust and fast clustering method for amplicon-based studies
    • Mahé, F., T. Rognes, C. Quince, C. de Vargas, and M. Dunthorn. 2014. Swarm: robust and fast clustering method for amplicon-based studies. PeerJ 2:e593.
    • (2014) PeerJ , vol.2 , pp. e593
    • Mahé, F.1    Rognes, T.2    Quince, C.3    de Vargas, C.4    Dunthorn, M.5
  • 41
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies, M., M. Egholm, W. E. Altman, S. Attiya, J. S. Bader, L. A. Bemben et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5    Bemben, L.A.6
  • 42
    • 17744398433 scopus 로고    scopus 로고
    • Selection on the structural stability of a ribosomal RNA expansion segment in Daphnia obtusa
    • McTaggart, S. J., and T. J. Crease. 2005. Selection on the structural stability of a ribosomal RNA expansion segment in Daphnia obtusa. Mol. Biol. Evol., 22:1309-1319.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1309-1319
    • McTaggart, S.J.1    Crease, T.J.2
  • 43
    • 68449095446 scopus 로고    scopus 로고
    • Length variation in 18S rRNA expansion segment 43/e4 of Daphnia obtusa: ancient or recurring polymorphism?
    • McTaggart, S. J., and T. J. Crease. 2009. Length variation in 18S rRNA expansion segment 43/e4 of Daphnia obtusa: ancient or recurring polymorphism? J. Mol. Evol. 69:142-149.
    • (2009) J. Mol. Evol. , vol.69 , pp. 142-149
    • McTaggart, S.J.1    Crease, T.J.2
  • 45
    • 0035844972 scopus 로고    scopus 로고
    • The unusually long small subunit ribosomal RNA gene found in amitochondriate amoebo agellate Pelomyxa palustris: its rRNA predicted secondary structure and phylogenetic implication
    • Milyutina, I., V. V. Aleshin, K. A. Mikrukov, O. S. Kedrova, and N. B. Petrov. 2001. The unusually long small subunit ribosomal RNA gene found in amitochondriate amoebo agellate Pelomyxa palustris: its rRNA predicted secondary structure and phylogenetic implication. Gene 272:131-139.
    • (2001) Gene , vol.272 , pp. 131-139
    • Milyutina, I.1    Aleshin, V.V.2    Mikrukov, K.A.3    Kedrova, O.S.4    Petrov, N.B.5
  • 46
    • 84876125024 scopus 로고    scopus 로고
    • Characterisation of the two intra-individual sequence variants in the 18S rRNA gene in the plant parasitic nematode, Rotylenchulus reniformis
    • Nyaku, S. T., V. R. Sripathi, R. V. Kantety, Y. Q. Gu, K. Lawrence, and G. C. Sharma. 2013. Characterisation of the two intra-individual sequence variants in the 18S rRNA gene in the plant parasitic nematode, Rotylenchulus reniformis. PLoS ONE 8:e60891.
    • (2013) PLoS ONE , vol.8 , pp. e60891
    • Nyaku, S.T.1    Sripathi, V.R.2    Kantety, R.V.3    Gu, Y.Q.4    Lawrence, K.5    Sharma, G.C.6
  • 47
    • 84930380341 scopus 로고    scopus 로고
    • Dipping into the rare biosphere
    • Pedrós-Alió, C. 2007. Dipping into the rare biosphere. Science 315:253-255.
    • (2007) Science , vol.315 , pp. 253-255
    • Pedrós-Alió, C.1
  • 48
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2, approximately maximum-likelihood trees for large alignments
    • Price, M. N., P. S. Dehal, and A. P. Arkin. 2010. FastTree 2, approximately maximum-likelihood trees for large alignments. PLoS ONE 5:e9490.
    • (2010) PLoS ONE , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 49
    • 0037310350 scopus 로고    scopus 로고
    • The correlation between rDNA copy number and genome size in eukaryotes
    • Prokopowich, C. D., T. R. Gregory, and T. J. Crease. 2003. The correlation between rDNA copy number and genome size in eukaryotes. Genome 46:48-50.
    • (2003) Genome , vol.46 , pp. 48-50
    • Prokopowich, C.D.1    Gregory, T.R.2    Crease, T.J.3
  • 50
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
    • Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, et al. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41:D590-D596.
    • (2013) Nucleic Acids Res. , vol.41 , pp. D590-D596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3    Gerken, J.4    Schweer, T.5    Yarza, P.6
  • 51
  • 53
    • 69549129476 scopus 로고    scopus 로고
    • The 'rare biosphere': a reality check
    • Reeder, J., and R. Knight. 2009. The 'rare biosphere': a reality check. Nat. Methods 6:636-637.
    • (2009) Nat. Methods , vol.6 , pp. 636-637
    • Reeder, J.1    Knight, R.2
  • 54
    • 83355173006 scopus 로고    scopus 로고
    • Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
    • Schloss, P. D., D. Gevers, and S. L. Westcott. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS ONE 6:e27310.
    • (2011) PLoS ONE , vol.6 , pp. e27310
    • Schloss, P.D.1    Gevers, D.2    Westcott, S.L.3
  • 58
    • 84862928738 scopus 로고    scopus 로고
    • A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
    • Sun, Y., Y. Cai, S. M. Huse, R. Knight, W. G. Farmerie, X. Wang, et al. 2012. A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis. Brief. Bioinform. 13:107-121.
    • (2012) Brief. Bioinform. , vol.13 , pp. 107-121
    • Sun, Y.1    Cai, Y.2    Huse, S.M.3    Knight, R.4    Farmerie, W.G.5    Wang, X.6
  • 59
    • 77956283658 scopus 로고    scopus 로고
    • 454 Pyrosequencing and Sanger sequencing of tropical mycorrhiza fungi provide similar results but reveal substantial methodological biases
    • Tedersoo, L., R. H. Nilsson, K. Abarenkov, T. Jairus, A. Sadam, I. Saar, et al. 2010. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhiza fungi provide similar results but reveal substantial methodological biases. New Phytol. 188:291-301.
    • (2010) New Phytol. , vol.188 , pp. 291-301
    • Tedersoo, L.1    Nilsson, R.H.2    Abarenkov, K.3    Jairus, T.4    Sadam, A.5    Saar, I.6
  • 60
    • 0034554835 scopus 로고    scopus 로고
    • Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
    • Wuyts, J., R. De Rijk, Y. Van de Peer, G. Pison, P. Rousseeuw, and R. De Wachter. 2000. Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res. 28:4698-4708.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4698-4708
    • Wuyts, J.1    De Rijk, R.2    Van de Peer, Y.3    Pison, G.4    Rousseeuw, P.5    De Wachter, R.6
  • 61
    • 0035945246 scopus 로고    scopus 로고
    • Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
    • Wuyts, J., Y. Van de Peer, and R. De Wachter. 2001. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucleic Acids Res. 29:5017-5028.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 5017-5028
    • Wuyts, J.1    Van de Peer, Y.2    De Wachter, R.3
  • 62
    • 84878914141 scopus 로고    scopus 로고
    • High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities
    • Zhan, A., M. Hulák, F. Sylvester, X. Huang, A. A. Abebayo, C. L. Abbott, et al. 2013. High sensitivity of 454 pyrosequencing for detection of rare species in aquatic communities. Methods Ecol. Evol. 4:558-565.
    • (2013) Methods Ecol. Evol. , vol.4 , pp. 558-565
    • Zhan, A.1    Hulák, M.2    Sylvester, F.3    Huang, X.4    Abebayo, A.A.5    Abbott, C.L.6
  • 63
    • 13844317082 scopus 로고    scopus 로고
    • Mapping of picoeukaryotes in marine ecosystems with a quantitative PCR of the 18S rRNA gene
    • Zhu, F., R. Massana, F. Not, D. Marie, and D. Vaulot. 2005. Mapping of picoeukaryotes in marine ecosystems with a quantitative PCR of the 18S rRNA gene. FEMS Microbiol. Ecol. 53:79-92.
    • (2005) FEMS Microbiol. Ecol. , vol.53 , pp. 79-92
    • Zhu, F.1    Massana, R.2    Not, F.3    Marie, D.4    Vaulot, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.