The unusually long small subunit ribosomal RNA gene found in amitochondriate amoeboflagellate Pelomyxa palustris: Its rRNA predicted secondary structure and phylogenetic implication

Gene

Volumn 272, Issue 1-2, 2001, Pages 131-139

  Milyutina, Irina A ^a   Aleshin, Vladimir V ^a   Mikrjukov, Kirill A ^a   Kedrova, Olga S ^a   Petrov, Nikolai B ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Archamoebae; Expansion sequences; Pelobionts; Slippage; V4 region

Indexed keywords

RIBOSOME RNA;

ACANTHAMOEBA; AMOEBA; ARTICLE; BALAMUTHIA; CONTROLLED STUDY; ENDOLIMAX; ENDOLIMAX NANA; ENTAMOEBA; FLAGELLATE; GENE AMPLIFICATION; GENE INSERTION; GENE SEQUENCE; MASTIGAMOEBA INVERTENS; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; PELOMYXA PALUSTRIS; PHREATAMOEBA BALAMUTHI; PHYLOGENY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA GENE; RNA STRUCTURE; SARCODINA; STRUCTURE ANALYSIS; VANNELLA;

AMOEBA; ANIMALS; BASE SEQUENCE; DNA, PROTOZOAN; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; RNA, RIBOSOMAL; SEQUENCE ANALYSIS, DNA;

ACANTHAMOEBA; ARCHAMOEBAE; ARCHEZOA; BALAMUTHIA; DIPLOMONADIDA GROUP; ENDOLIMAX NANA; ENTAMOEBA; EUKARYOTA; HARTMANNELLA; MASTIGAMOEBA BALAMUTHI; MASTIGAMOEBA INVERTENS; MICROSPORIDIA; PARABASALIDEA; PELOBIONTIDA; PELOMYXA PALUSTRIS; VANNELLA;

EID: 0035844972     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(01)00556-X     Document Type: Article

References (35)

1. Phylogenetic relationships between the Acantharea and the Polycystinea: A molecular perspective on Haeckel's Radiolaria
2. Flagellar and cytoskeletal systems in amitochondrial flagellates - Archamoeba, Metamonada and Parabasalia
3. A 6-kingdom classification and a unified phylogeny
4. A revised six-kingdom system of life
5. A light and electron microscopical study of a new polymorphic free-living amoeba, Phreatamoeba balamuthi, n. g., n. sp.
6. Analysis of the primary sequence and secondary structure of the unusually long SSU rRNA of the soil bug, Armadillidium vulgare
7. Putative secondary structures of unusually long strepsipteran SSU rRNAs and its phylogenetic implications
8. The unusually long small-subunit ribosomal RNA of the crustacean, Daphnia pulex: Sequence and predicted secondary structure
9. RnaViz, a program for the visualisation of RNA secondary structure
10. Early branching eukaryotes?
11. New ideas on the nature of the giant amoeba Pelomyxa palustris - The position of this organism in the system of lower eukaryotes (Pelloflagelata - Classis n.)
12. Fine structure and taxonomic position of the giant amoeboid flagellate Pelomyxa palustris
13. Modelling the secondary structures of slippage-prone hypervariable RNA regions: The example of the tiger beetle 18S rRNA variable region V4
14. The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi
15. Microsporidia are related to Fungi: Evidence from the largest subunit of RNA polymerase II and other proteins
16. Group I introns in fungal 18S rDNA of the lichen family Umbilicariaceae
17. Parabasalian flagellates are ancient eukaryotes
18. Hsp60 is targeted to a cryptic mitochondrion-derived organelle ("crypton") in the microaerophilic protozoan parasite Entamoeba histolytica
19. Are Archamoebae true Archezoa? The phylogenetic position of Pelomyxa sp., as inferred from large subunit ribosomal RNA sequencing
20. fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
21. The classification of the naked amoebae (Phylum Rhizopoda)
22. Early origin of Foraminifera suggested by SSU rRNA gene sequences
23. Molecular evidence that Reticulomyxa filosa is a freshwater naked foraminifer
24. Golgi apparatus in the amoeba Pelomyxa palustris
25. The flagella of the fresh-water amoeba Pelomyxa palustris
26. Phylogeny of the genera Entamoeba and Endolimax as deduced from small-subunit ribosomal RNA sequences
27. The organization of Mastigamoeba schizophrenia n. sp.: More evidence of ultrastructural idiosyncrasy and simplicity in pelobiont protists
28. Primary and secondary structure of the small-subunit ribosomal RNA of the naked, marine amoeba Vannella anglica: Phylogenetic implications
29. Long-branch attraction and the rDNA model of early eukaryotic evolution
30. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
31. Complete sequences of the rRNA genes of Drosophila melanogaster
32. The mitosome, a novel organelle related to mitochondria in the amitochondrial parasite Entamoeba histolytica
33. The European small subunit ribosomal RNA database
34. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide