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Volumn 8, Issue 4, 2013, Pages

Characterization of the Two Intra-Individual Sequence Variants in the 18S rRNA Gene in the Plant Parasitic Nematode, Rotylenchulus reniformis

Author keywords

[No Author keywords available]

Indexed keywords

RNA 18S;

EID: 84876125024     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0060891     Document Type: Article
Times cited : (24)

References (41)
  • 2
    • 0029955186 scopus 로고    scopus 로고
    • Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida)
    • Carranza S, Giribet G, Ribera C, Baguna J, Riutort M, (1996) Evidence that two types of 18S rDNA coexist in the genome of Dugesia (Schmidtea) mediterranea (Platyhelminthes, Turbellaria, Tricladida). Mol Biol Evol 13: 824-832.
    • (1996) Mol Biol Evol , vol.13 , pp. 824-832
    • Carranza, S.1    Giribet, G.2    Ribera, C.3    Baguna, J.4    Riutort, M.5
  • 3
    • 0002480473 scopus 로고
    • The dynamics of genome evolution and species differentiation
    • In: Dover G, Flavell R.B editors, Academic Press, London
    • Dover G, Brown S, Coen E, Dallas J, Strachan T, et al. (1982) The dynamics of genome evolution and species differentiation. In: Dover G, Flavell R.B editors. Genome evolution. Academic Press, London. 382pp.
    • (1982) Genome evolution , pp. 382
    • Dover, G.1    Brown, S.2    Coen, E.3    Dallas, J.4    Strachan, T.5
  • 4
    • 0026300584 scopus 로고
    • Ribosomal DNA: Molecular evolution and phylogenetic inference
    • Hillis DM, Dixon MT, (1991) Ribosomal DNA: Molecular evolution and phylogenetic inference. Quart Rev Biol 66: 411-453.
    • (1991) Quart Rev Biol , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 5
    • 0023046875 scopus 로고
    • Preferential homogenization between adjacent and alternate subrepeats in wheat rDNA
    • Lassner M, Dvorak J, (1986) Preferential homogenization between adjacent and alternate subrepeats in wheat rDNA. Nucl Acids Res 13: 5499-5512.
    • (1986) Nucl Acids Res , vol.13 , pp. 5499-5512
    • Lassner, M.1    Dvorak, J.2
  • 6
    • 0020527088 scopus 로고
    • Unequal exchanges and the coevolution of X and Y chromosomal rDNA arrays in Drosophila melanogaster
    • Coen ES, Dover GA, (1983) Unequal exchanges and the coevolution of X and Y chromosomal rDNA arrays in Drosophila melanogaster. Cell 33: 849-854.
    • (1983) Cell , vol.33 , pp. 849-854
    • Coen, E.S.1    Dover, G.A.2
  • 7
    • 0141816823 scopus 로고    scopus 로고
    • 18S rRNA gene variation among common airborne fungi and development of specific oligonucleotide probes for the detection of fungal isolates
    • Wu Z, Tsumura Y, Blomquist G, Wang X, (2003) 18S rRNA gene variation among common airborne fungi and development of specific oligonucleotide probes for the detection of fungal isolates. Appl Environ Microbiol 69: 5389-5397.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5389-5397
    • Wu, Z.1    Tsumura, Y.2    Blomquist, G.3    Wang, X.4
  • 8
    • 33745664513 scopus 로고    scopus 로고
    • Unusual intra-individual variation of the 18S rRNA gene is widespread within the Acipenseridae
    • Krieger K, Hett AK, Fuerst PA, Birstein VJ, Ludwig A, (2006) Unusual intra-individual variation of the 18S rRNA gene is widespread within the Acipenseridae. J Hered 97: 218-225.
    • (2006) J Hered , vol.97 , pp. 218-225
    • Krieger, K.1    Hett, A.K.2    Fuerst, P.A.3    Birstein, V.J.4    Ludwig, A.5
  • 9
    • 38849095337 scopus 로고    scopus 로고
    • Sequence variation within the rRNA gene loci of 12 Drosophila species
    • Stage DE, Eickbush TH, (2007) Sequence variation within the rRNA gene loci of 12 Drosophila species. Genome Res 12: 1888-1897.
    • (2007) Genome Res , vol.12 , pp. 1888-1897
    • Stage, D.E.1    Eickbush, T.H.2
  • 13
    • 0010711019 scopus 로고    scopus 로고
    • Dissemination and mode of survival of nematodes in dust storms
    • Gaur HS, (1998) Dissemination and mode of survival of nematodes in dust storms. Indian J Nematol 18: 84-98.
    • (1998) Indian J Nematol , vol.18 , pp. 84-98
    • Gaur, H.S.1
  • 14
    • 3142707841 scopus 로고    scopus 로고
    • Impact of nematicides on cotton production in reniform infested fields
    • Anaheim, CA
    • Gazaway WS, Akridge JR, McLean KS (2001) Impact of nematicides on cotton production in reniform infested fields. Proc Beltwide Cotton Conf, Anaheim, CA 128pp.
    • (2001) Proc Beltwide Cotton Conf , pp. 128
    • Gazaway, W.S.1    Akridge, J.R.2    McLean, K.S.3
  • 15
    • 0001929343 scopus 로고    scopus 로고
    • Reniform nematode-An introduction
    • Orlando, FL: National Cotton Council of America
    • Overstreet C (1999) Reniform nematode-An introduction. Proceedings of the Beltwide Cotton Conferences, Orlando, FL: National Cotton Council of America. pp1-100.
    • (1999) Proceedings of the Beltwide Cotton Conferences , pp. 1-100
    • Overstreet, C.1
  • 16
    • 0033375639 scopus 로고    scopus 로고
    • Managing the reniform nematode with nematicides
    • Orlando, FL
    • Lawrence GW, McLean KS (1999) Managing the reniform nematode with nematicides. Proc Beltwide Cotton Conf, Orlando, FL. pp100-101.
    • (1999) Proc Beltwide Cotton Conf , pp. 100-101
    • Lawrence, G.W.1    McLean, K.S.2
  • 17
    • 3142694214 scopus 로고    scopus 로고
    • A survey of plant-parasitic nematodes associated with cotton in Alabama
    • Gazaway WS, McLean KS, (2003) A survey of plant-parasitic nematodes associated with cotton in Alabama. Cotton Sci 7: 1-7.
    • (2003) Cotton Sci , vol.7 , pp. 1-7
    • Gazaway, W.S.1    McLean, K.S.2
  • 18
    • 33847306539 scopus 로고    scopus 로고
    • Reniform nematode resistance in upland cotton germplasm
    • Weaver BW, Lawrence KS, van Santen E, (2007) Reniform nematode resistance in upland cotton germplasm. Crop Sci 47: 19-24.
    • (2007) Crop Sci , vol.47 , pp. 19-24
    • Weaver, B.W.1    Lawrence, K.S.2    van Santen, E.3
  • 19
    • 0034025097 scopus 로고    scopus 로고
    • Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
    • Lydeard C, Holznagel WE, Schnare MN, Gutell RR, (2000) Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures. Mol Phylogen and Evol 15: 83-102.
    • (2000) Mol Phylogen and Evol , vol.15 , pp. 83-102
    • Lydeard, C.1    Holznagel, W.E.2    Schnare, M.N.3    Gutell, R.R.4
  • 20
    • 0033135245 scopus 로고    scopus 로고
    • Molecular analysis of nematode diversity and the evolution of parasitism
    • Dorris M, De Ley P, Blaxter ML, (1999) Molecular analysis of nematode diversity and the evolution of parasitism. Parasitology Today 15: 188-193.
    • (1999) Parasitology Today , vol.15 , pp. 188-193
    • Dorris, M.1    De Ley, P.2    Blaxter, M.L.3
  • 21
    • 0036292055 scopus 로고    scopus 로고
    • A PCR primer set for determination of phylogenetic relationships of Bursaphelenchus species within the xylophilus group
    • Kanzaki N, Futai K, (2002) A PCR primer set for determination of phylogenetic relationships of Bursaphelenchus species within the xylophilus group. Nematol 4: 35-41.
    • (2002) Nematol , vol.4 , pp. 35-41
    • Kanzaki, N.1    Futai, K.2
  • 22
    • 4444358652 scopus 로고    scopus 로고
    • Phylogenetic relationship among Xiphinema and Xiphidorus nematode species from Brazil inferred from 18S rDNA sequences
    • Oliveira CMG, Hübschen J, Brown DJF, Ferraz LCCB, Wright F, et al. (2004) Phylogenetic relationship among Xiphinema and Xiphidorus nematode species from Brazil inferred from 18S rDNA sequences. J Nematol 36: 153-159.
    • (2004) J Nematol , vol.36 , pp. 153-159
    • Oliveira, C.M.G.1    Hübschen, J.2    Brown, D.J.F.3    Ferraz, L.C.C.B.4    Wright, F.5
  • 23
    • 0033252044 scopus 로고    scopus 로고
    • General properties and phylogenetic utilities of nuclear ribosomal DNA and mitochondrial DNA commonly used in molecular systematics
    • Hwang UW, Kim W, (1999) General properties and phylogenetic utilities of nuclear ribosomal DNA and mitochondrial DNA commonly used in molecular systematics. Korean J Parasitol 37: 215-228.
    • (1999) Korean J Parasitol , vol.37 , pp. 215-228
    • Hwang, U.W.1    Kim, W.2
  • 24
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nuc Acids Symposium Series 41: 95-98.
    • (1999) Nuc Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 26
    • 0347607156 scopus 로고    scopus 로고
    • Evolution of hypervariable regions, V4 and V7, of insect 18S rRNA and their phylogenetic implications
    • Hwang UW, Ree HI, Kim W, (2000) Evolution of hypervariable regions, V4 and V7, of insect 18S rRNA and their phylogenetic implications. Zool Sci 17: 111-121.
    • (2000) Zool Sci , vol.17 , pp. 111-121
    • Hwang, U.W.1    Ree, H.I.2    Kim, W.3
  • 27
    • 65549169523 scopus 로고    scopus 로고
    • Hyper-variable regions in 18S rDNA of Strongyloides spp. as markers for species-specific diagnosis
    • Hasegawa H, Hayashida S, Ikeda Y, Sato H, (2009) Hyper-variable regions in 18S rDNA of Strongyloides spp. as markers for species-specific diagnosis. Parasitol Res 104: 869-874.
    • (2009) Parasitol Res , vol.104 , pp. 869-874
    • Hasegawa, H.1    Hayashida, S.2    Ikeda, Y.3    Sato, H.4
  • 28
    • 0028117608 scopus 로고
    • Blood and sporozoite stage-specific small subunit ribosomal RNA-encoding genes of the human malaria parasite Plasmodium vivax
    • Qari SH, Goldman IF, Pieniazek NJ, Collins WE, Lal AA, (1994) Blood and sporozoite stage-specific small subunit ribosomal RNA-encoding genes of the human malaria parasite Plasmodium vivax. Gene 150: 43-49.
    • (1994) Gene , vol.150 , pp. 43-49
    • Qari, S.H.1    Goldman, I.F.2    Pieniazek, N.J.3    Collins, W.E.4    Lal, A.A.5
  • 29
    • 0001088308 scopus 로고
    • Enzyme electrophoresis, 18S rRNA sequences, and levels of phylogenetic resolution among several species of freshwater planarians (Platyhelminthes, Tricladida, Paludicola)
    • Riutort M, Field KG, Turbeville JM, Raff RA, Baguna J, (1992) Enzyme electrophoresis, 18S rRNA sequences, and levels of phylogenetic resolution among several species of freshwater planarians (Platyhelminthes, Tricladida, Paludicola). Can J Zool 70: 1425-1439.
    • (1992) Can J Zool , vol.70 , pp. 1425-1439
    • Riutort, M.1    Field, K.G.2    Turbeville, J.M.3    Raff, R.A.4    Baguna, J.5
  • 30
    • 0021759601 scopus 로고
    • Xenopus laevis 28S ribosomal RNA: A secondary structure model and its evolutionary and functional implications
    • Clark CG, Tague BW, Ware VC, Gerbi SA, (1984) Xenopus laevis 28S ribosomal RNA: A secondary structure model and its evolutionary and functional implications. Nucleic Acids Res 12: 6197-6220.
    • (1984) Nucleic Acids Res , vol.12 , pp. 6197-6220
    • Clark, C.G.1    Tague, B.W.2    Ware, V.C.3    Gerbi, S.A.4
  • 31
    • 0021770476 scopus 로고
    • The complete nucleotide sequence of mouse 28S rRNA gene: Implications for the process of size increase of the large subunit rRNA in higher eukaryotes
    • Hassouna N, Michot B, Bachellerie JP, (1984) The complete nucleotide sequence of mouse 28S rRNA gene: Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res 12: 3563-3583.
    • (1984) Nucleic Acids Res , vol.12 , pp. 3563-3583
    • Hassouna, N.1    Michot, B.2    Bachellerie, J.P.3
  • 32
    • 34247899003 scopus 로고    scopus 로고
    • Finely orchestrated movements: Evolution of the ribosomal RNA genes
    • Eickbush TH, Eickbush DG, (2007) Finely orchestrated movements: Evolution of the ribosomal RNA genes. Genetics 175: 477-485.
    • (2007) Genetics , vol.175 , pp. 477-485
    • Eickbush, T.H.1    Eickbush, D.G.2
  • 34
    • 68449095446 scopus 로고    scopus 로고
    • Length Variation in 18S rRNA Expansion Segment 43/e4 of Daphnia obtusa: Ancient or Recurring Polymorphism?
    • McTaggart SJ, Crease TJ, (2009) Length Variation in 18S rRNA Expansion Segment 43/e4 of Daphnia obtusa: Ancient or Recurring Polymorphism? J Mol Evol 69: 142-149.
    • (2009) J Mol Evol , vol.69 , pp. 142-149
    • McTaggart, S.J.1    Crease, T.J.2
  • 35
    • 0032486240 scopus 로고    scopus 로고
    • Secondary structure of some elements of 18S rRNA suggests that strongylid and a part of rhabditid nematodes are monophyletic
    • Aleshin VV, Kedrova OS, Milyutina IA, Vladychenskaya NS, Petrov NB, (1998) Secondary structure of some elements of 18S rRNA suggests that strongylid and a part of rhabditid nematodes are monophyletic. FEBS letters 429: 4-8.
    • (1998) FEBS Letters , vol.429 , pp. 4-8
    • Aleshin, V.V.1    Kedrova, O.S.2    Milyutina, I.A.3    Vladychenskaya, N.S.4    Petrov, N.B.5
  • 36
    • 84862792678 scopus 로고    scopus 로고
    • Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of "Alexandrium tamarense" species complex
    • Miranda LN, Zhuang Y, Zhang H, Lin S, (2012) Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of "Alexandrium tamarense" species complex. Harmful Algae 16: 35-48.
    • (2012) Harmful Algae , vol.16 , pp. 35-48
    • Miranda, L.N.1    Zhuang, Y.2    Zhang, H.3    Lin, S.4
  • 37
    • 84876126371 scopus 로고    scopus 로고
    • An improved method for the extraction of nematodes using iodixanol (OptiPrepTM)
    • Deng D, Zipf A, Tilahun Y, Sharma GC, Jenkins J, (2008) et al (2008) An improved method for the extraction of nematodes using iodixanol (OptiPrepTM). Afri J Microbiol Res 2: 167-170.
    • (2008) Afri J Microbiol Res , vol.2 , pp. 167-170
    • Deng, D.1    Zipf, A.2    Tilahun, Y.3    Sharma, G.C.4    Jenkins, J.5
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber T, Faulkner G, Hugenholtz P, (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 41
    • 84859947721 scopus 로고    scopus 로고
    • LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs
    • Will S, Joshi T, Hofacker IL, Stadler PF, Backofen R, (2012) LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs. RNA 18: 900-914.
    • (2012) RNA , vol.18 , pp. 900-914
    • Will, S.1    Joshi, T.2    Hofacker, I.L.3    Stadler, P.F.4    Backofen, R.5


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