Length variation in 18S rRNA expansion segment 43/e4 of daphnia obtusa: Ancient or recurring polymorphism?

Journal of Molecular Evolution

Volumn 69, Issue 2, 2009, Pages 142-149

  McTaggart, Seanna J ^a   Crease, Teresa J ^b  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

^b UNIVERSITY OF GUELPH   (Canada)

Author keywords

Concerted evolution; Daphnia; Expansion segment; Multigene family; Phylogeophraphy; RDNA

Indexed keywords

ALLOENZYME; GENOMIC DNA; MITOCHONDRIAL DNA; RIBOSOME DNA; RNA 18S;

ARTICLE; DAPHNIA; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NORTH AMERICA; PHYLOGENY; SPECIES;

ANIMALS; BASE SEQUENCE; DAPHNIA; GEOGRAPHY; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; RNA, RIBOSOMAL, 18S;

DAPHNIA; DAPHNIA OBTUSA;

EID: 68449095446     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-009-9257-y     Document Type: Article

References (22)

1. I Charalambidou L Santamaria 2005 Field evidence for the potential of waterbirds as dispersers of aquatic organisms Wetlands 25 252 258
2. TJ Crease DJ Taylor 1998 The origin and evolution of variable-region helices in V4 and V7 of the small-subunit ribosomal RNA of branchiopod crustaceans Mol Biol Evol 15 1430 1446
3. T Crease M Lynch K Spitze 1990 Hierarchical analysis of population genetic structure in mitochondrial and nuclear genes of Daphnia pulex Mol Biol Evol 7 444 458
4. TJ Crease S-K Lee S-L Yu K Spitze N Lehman M Lynch 1997 Allozyme and mtDNA variation in populations on both sides of the Daphnia pulex complex from both sides of the Rocky Mountains Heredity 79 242 251
5. TH Eickbush DG Eickbush 2007 Finely orchestrated movements: evolution of the ribosomal RNA genes Genetics 175 477 485
6. LGL Excoffier G Laval S Schneider 2005 Arlequin ver. 3.0: an integrated software package for population genetics data analysis Evol Bioinform Online 1 47 50
7. Felsenstein J (2004) PHYLIP (Phylogeny Inference Package) (Distributed by the author). Department of Genome Sciences, University of Washington, Seattle
8. J Figuerola AJ Green TC Michot 2005 Invertebrate eggs can fly: evidence of waterfowl-mediated gene flow in aquatic invertebrates Am Nat 165 274 280
9. M García E Nicholson D Nickrent 2004 Extensive intraindividual variation in plastid rDNA sequences from the holoparasite Cynomorium coccineum (Cynomoriaceae) J Mol Evol 58 322 332
10. I Gonzalez J Gorski T Campen D Dorney J Erikson J Sylvester R Schmickel 1985 Variation among human 28S ribosomal RNA genes Proc Natl Acad Sci USA 82 7666 7670
11. JM Hancock GA Dover 1990 Compensatory slippage in the evolution of ribosomal-RNA genes Nucleic Acids Res 18 5949 5954
12. JM Hancock AP Vogler 2000 How slippage-derived sequences are incorporated into rRNA variable-region secondary structure: implications for phylogeny reconstruction Mol Phylogenet Evol 14 366 374
13. PDN Hebert TL Finston 1996 Genetic differentiation in Daphnia obtusa: a continental perspective Freshw Biol 35 311 321
14. M Holzmann W Piller J Pawloski 1996 Sequence variations in the large sub-unit ribosomal RNA gene of Ammonia (Foraminifera, Protozoa) and their evolutionary implications J Mol Evol 43 145 151
15. S Ishida DJ Taylor 2007 Mature habitats associated with genetic divergence despite strong dispersal ability in an arthropod BMC Evol Biol 7 52
16. SJ McTaggart TJ Crease 2005 Selection on the structural stability of a ribosomal RNA expansion segment in Daphnia obtusa Mol Biol Evol 22 1309 1319
17. S McTaggart JL Dudycha A Omilian TJ Crease 2007 Rates of recombination in the ribosomal DNA of apomictically propagated Daphnia obtusa lines Genetics 175 311 320
18. S Paland JK Colbourne M Lynch 2005 Evolutionary history of contagious asexuality in Daphnia pulex Evol Int J Org Evol 59 800 813
19. EH Penton PDN Hebert TJ Crease 2004 Mitochondrial DNA variation in North American populations of Daphnia obtusa: continentalism or cryptic endemism? Mol Ecol 13 97 107
20. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
21. DJ Taylor TL Finston PDN Hebert 1998 Biogeography of a widespread freshwater crustacean: pseudocongruence and cryptic endemism in the North American Daphnia laevis complex Evol Int J Org Evol 52 1648 1670
22. J Wuyts Y Van de Peer RD Wachter 2001 Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA Nucleic Acids Res 29 5017 5028