-
1
-
-
0004250845
-
-
5th edn (eds Knipe, D. M. & Howley, P. M.) (Lippincott Williams & Wilkins)
-
Roizman, B. & Knipe, D. M in Fields Virology 5th edn (eds Knipe, D. M. & Howley, P. M.) 2501-2601 (Lippincott Williams & Wilkins, 2007).
-
(2007)
Fields Virology
, pp. 2501-2601
-
-
Roizman, B.1
Knipe, D.M.2
-
2
-
-
2642604294
-
Herpes simplex virus-infected cells contain a function(s) that destabilizes both host and viral mRNAs
-
Kwong, A. D. & Frenkel, N. Herpes simplex virus-infected cells contain a function(s) that destabilizes both host and viral mRNAs. Proc. Natl Acad. Sci. USA 84, 1926-1930 (1987).
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 1926-1930
-
-
Kwong, A.D.1
Frenkel, N.2
-
3
-
-
0024521222
-
Control of mRNA stability by the virion host shutoff function of herpes simplex virus
-
Oroskar, A. A. & Read, G. S. Control of mRNA stability by the virion host shutoff function of herpes simplex virus. J. Virol. 63, 1897-1906 (1989).
-
(1989)
J. Virol.
, vol.63
, pp. 1897-1906
-
-
Oroskar, A.A.1
Read, G.S.2
-
4
-
-
81255208061
-
The many roles of the highly interactive HSV protein ICP27, a key regulator of infection
-
Sandri-Goldin, R. M. The many roles of the highly interactive HSV protein ICP27, a key regulator of infection. Future Microbiol. 6, 1261-1277 (2011).
-
(2011)
Future Microbiol.
, vol.6
, pp. 1261-1277
-
-
Sandri-Goldin, R.M.1
-
5
-
-
52049115835
-
The many roles of the regulatory protein ICP27 during herpes simplex virus infection
-
Sandri-Goldin, R. M. The many roles of the regulatory protein ICP27 during herpes simplex virus infection. Front. Biosci. 13, 5241-5256 (2008).
-
(2008)
Front. Biosci.
, vol.13
, pp. 5241-5256
-
-
Sandri-Goldin, R.M.1
-
6
-
-
21044445925
-
The herpes simplex virus ICP27 protein: A multifunctional post-transcriptional regulator of gene expression
-
Smith, R. W., Malik, P. & Clements, J. B. The herpes simplex virus ICP27 protein: a multifunctional post-transcriptional regulator of gene expression. Biochem. Soc. Trans. 33, 499-501 (2005).
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 499-501
-
-
Smith, R.W.1
Malik, P.2
Clements, J.B.3
-
7
-
-
0028029752
-
Herpes simplex virus inhibits host cell splicing, and regulatory protein ICP27 is required for this effect
-
Hardy, W. R. & Sandri-Goldin, R. M. Herpes simplex virus inhibits host cell splicing, and regulatory protein ICP27 is required for this effect. J. Virol. 68, 7790-7799 (1994).
-
(1994)
J. Virol.
, vol.68
, pp. 7790-7799
-
-
Hardy, W.R.1
Sandri-Goldin, R.M.2
-
8
-
-
0037387122
-
ICP27 interacts with SRPK1 to mediate HSV splicing inhibition by altering SR protein phosphorylation
-
Sciabica, K. S., Dai, Q. J. & Sandri-Goldin, R. M. ICP27 interacts with SRPK1 to mediate HSV splicing inhibition by altering SR protein phosphorylation. EMBO J. 22, 1608-1619 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 1608-1619
-
-
Sciabica, K.S.1
Dai, Q.J.2
Sandri-Goldin, R.M.3
-
9
-
-
0036067973
-
Splicing inhibition at the level of spliceosome assembly in the presence of herpes simplex virus protein ICP27
-
Lindberg, A. & Kreivi, J. P. Splicing inhibition at the level of spliceosome assembly in the presence of herpes simplex virus protein ICP27. Virology 294, 189-198 (2002).
-
(2002)
Virology
, vol.294
, pp. 189-198
-
-
Lindberg, A.1
Kreivi, J.P.2
-
10
-
-
0035050518
-
Herpes simplex virus IE63 (ICP27) protein interacts with spliceosomeassociated protein 145 and inhibits splicing prior to the first catalytic step
-
Bryant, H. E., Wadd, S. E., Lamond, A. I., Silverstein, S. J. & Clements, J. B. Herpes simplex virus IE63 (ICP27) protein interacts with spliceosomeassociated protein 145 and inhibits splicing prior to the first catalytic step. J. Virol. 75, 4376-4385 (2001).
-
(2001)
J. Virol.
, vol.75
, pp. 4376-4385
-
-
Bryant, H.E.1
Wadd, S.E.2
Lamond, A.I.3
Silverstein, S.J.4
Clements, J.B.5
-
11
-
-
0029130064
-
The C-terminal repressor region of herpes simplex virus type 1 ICP27 is required for the redistribution of small nuclear ribonucleoprotein particles and splicing factor SC35; However, these alterations are not sufficient to inhibit host cell splicing
-
Sandri-Goldin, R. M., Hibbard, M. K. & Hardwicke, M. A. The C-terminal repressor region of herpes simplex virus type 1 ICP27 is required for the redistribution of small nuclear ribonucleoprotein particles and splicing factor SC35; however, these alterations are not sufficient to inhibit host cell splicing. J. Virol. 69, 6063-6076 (1995).
-
(1995)
J. Virol.
, vol.69
, pp. 6063-6076
-
-
Sandri-Goldin, R.M.1
Hibbard, M.K.2
Hardwicke, M.A.3
-
12
-
-
0027424652
-
A herpes simplex virus type 1 immediate-early gene product, IE63, regulates small nuclear ribonucleoprotein distribution
-
Phelan, A., Carmo-Fonseca, M., McLaughlan, J., Lamond, A. I. & Clements, J. B. A herpes simplex virus type 1 immediate-early gene product, IE63, regulates small nuclear ribonucleoprotein distribution. Proc. Natl Acad. Sci. USA 90, 9056-9060 (1993).
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 9056-9060
-
-
Phelan, A.1
Carmo-Fonseca, M.2
McLaughlan, J.3
Lamond, A.I.4
Clements, J.B.5
-
13
-
-
0017084631
-
The effects of herpes simplex virus type 1 on cellular DNA-dependent RNA polymerase activities
-
Preston, C. M. & Newton, A. A. The effects of herpes simplex virus type 1 on cellular DNA-dependent RNA polymerase activities. J. Gen. Virol. 33, 471-482 (1976).
-
(1976)
J. Gen. Virol.
, vol.33
, pp. 471-482
-
-
Preston, C.M.1
Newton, A.A.2
-
14
-
-
0031058732
-
Repression of host RNA polymerase II transcription by herpes simplex virus type 1
-
Spencer, C. A., Dahmus, M. E. & Rice, S. A. Repression of host RNA polymerase II transcription by herpes simplex virus type 1. J. Virol. 71, 2031-2040 (1997).
-
(1997)
J. Virol.
, vol.71
, pp. 2031-2040
-
-
Spencer, C.A.1
Dahmus, M.E.2
Rice, S.A.3
-
15
-
-
0014540716
-
Ribonucleic acid synthesis in cells infected with herpes simplex virus. I. Patterns of ribonucleic acid synthesis in productively infected cells
-
Wagner, E. K. & Roizman, B. Ribonucleic acid synthesis in cells infected with herpes simplex virus. I. Patterns of ribonucleic acid synthesis in productively infected cells. J. Virol. 4, 36-46 (1969).
-
(1969)
J. Virol.
, vol.4
, pp. 36-46
-
-
Wagner, E.K.1
Roizman, B.2
-
16
-
-
33645213186
-
ICP27 interacts with the C-terminal domain of RNA polymerase II and facilitates its recruitment to herpes simplex virus 1 transcription sites, where it undergoes proteasomal degradation during infection
-
Dai-Ju, J. Q., Li, L., Johnson, L. A. & Sandri-Goldin, R. M. ICP27 interacts with the C-terminal domain of RNA polymerase II and facilitates its recruitment to herpes simplex virus 1 transcription sites, where it undergoes proteasomal degradation during infection. J. Virol. 80, 3567-3581 (2006).
-
(2006)
J. Virol.
, vol.80
, pp. 3567-3581
-
-
Dai-Ju, J.Q.1
Li, L.2
Johnson, L.A.3
Sandri-Goldin, R.M.4
-
17
-
-
84866919768
-
Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection
-
Marcinowski, L. et al. Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection. PLoS Pathog. 8, e1002908 (2012).
-
(2012)
PLoS Pathog.
, vol.8
-
-
Marcinowski, L.1
-
18
-
-
78650930357
-
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
-
Miller, C. et al. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol. Syst. Biol. 7, 458 (2011).
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 458
-
-
Miller, C.1
-
19
-
-
50649118115
-
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
-
Dölken, L. et al. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14, 1959-1972 (2008).
-
(2008)
RNA
, vol.14
, pp. 1959-1972
-
-
Dölken, L.1
-
20
-
-
79955768436
-
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells
-
Rabani, M. et al. Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells. Nat. Biotechnol. (2011).
-
(2011)
Nat. Biotechnol.
-
-
Rabani, M.1
-
21
-
-
84866171651
-
Ultra short and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution
-
Windhager, L. et al. Ultra short and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution. Genome Res. (2012).
-
(2012)
Genome Res.
-
-
Windhager, L.1
-
22
-
-
62549134121
-
Genomewide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genomewide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223 (2009).
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
23
-
-
84869806462
-
Decoding human cytomegalovirus
-
Stern-Ginossar, N. et al. Decoding human cytomegalovirus. Science 338, 1088-1093 (2012).
-
(2012)
Science
, vol.338
, pp. 1088-1093
-
-
Stern-Ginossar, N.1
-
24
-
-
84881539278
-
Metabolic labeling of newly transcribed RNA for high resolution gene expression profiling of RNA synthesis, processing and decay in cell culture
-
Radle, B. et al. Metabolic labeling of newly transcribed RNA for high resolution gene expression profiling of RNA synthesis, processing and decay in cell culture. J. Vis. Exp. 78, e50195 (2013).
-
(2013)
J. Vis. Exp.
, vol.78
-
-
Radle, B.1
-
25
-
-
84893766839
-
KSHV 2.0: A comprehensive annotation of the Kaposi's sarcomaassociated herpesvirus genome using next-generation sequencing reveals novel genomic and functional features
-
Arias, C. et al. KSHV 2.0: a comprehensive annotation of the Kaposi's sarcomaassociated herpesvirus genome using next-generation sequencing reveals novel genomic and functional features PLoS Pathog. 10, e1003847 (2014).
-
(2014)
PLoS Pathog
, vol.10
-
-
Arias, C.1
-
26
-
-
84902108855
-
Quantitative temporal viromics: An approach to investigate host-pathogen interaction
-
Weekes, M. P. et al. Quantitative temporal viromics: an approach to investigate host-pathogen interaction. Cell 157, 1460-1472 (2014).
-
(2014)
Cell
, vol.157
, pp. 1460-1472
-
-
Weekes, M.P.1
-
27
-
-
0033858202
-
Patterns of variant polyadenylation signal usage in human genes
-
Beaudoing, E., Freier, S., Wyatt, J. R., Claverie, J. M. & Gautheret, D. Patterns of variant polyadenylation signal usage in human genes. Genome Res. 10, 1001-1010 (2000).
-
(2000)
Genome Res.
, vol.10
, pp. 1001-1010
-
-
Beaudoing, E.1
Freier, S.2
Wyatt, J.R.3
Claverie, J.M.4
Gautheret, D.5
-
28
-
-
80052447253
-
Ending the message: Poly(A) signals then and now
-
Proudfoot, N. J. Ending the message: poly(A) signals then and now. Genes Dev. 25, 1770-1782 (2011).
-
(2011)
Genes Dev.
, vol.25
, pp. 1770-1782
-
-
Proudfoot, N.J.1
-
29
-
-
77952905505
-
Most 'dark matter' transcripts are associated with known genes
-
van Bakel, H., Nislow, C., Blencowe, B. J. & Hughes, T. R. Most 'dark matter' transcripts are associated with known genes. PLoS Biol. 8, e1000371 (2010).
-
(2010)
PLoS Biol.
, vol.8
-
-
Van Bakel, H.1
Nislow, C.2
Blencowe, B.J.3
Hughes, T.R.4
-
30
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M. N. et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927 (2011).
-
(2011)
Genes Dev.
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
-
31
-
-
14944374438
-
Distributions of exons and introns in the human genome
-
Sakharkar, M. K., Chow, V. T. & Kangueane, P. Distributions of exons and introns in the human genome. In Silico Biol. 4, 387-393 (2004).
-
(2004)
Silico Biol.
, vol.4
, pp. 387-393
-
-
Sakharkar, M.K.1
Chow, V.T.2
Kangueane, P.3
-
32
-
-
84861905610
-
Co-transcriptional degradation of aberrant pre-mRNA by Xrn2
-
Davidson, L., Kerr, A. & West, S. Co-transcriptional degradation of aberrant pre-mRNA by Xrn2. EMBO J. 31, 2566-2578 (2012).
-
(2012)
EMBO J.
, vol.31
, pp. 2566-2578
-
-
Davidson, L.1
Kerr, A.2
West, S.3
-
33
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
34
-
-
0031717602
-
The role of herpes simplex virus ICP27 in the regulation of UL24 gene expression by differential polyadenylation
-
Hann, L. E., Cook, W. J., Uprichard, S. L., Knipe, D. M. & Coen, D. M. The role of herpes simplex virus ICP27 in the regulation of UL24 gene expression by differential polyadenylation. J. Virol. 72, 7709-7714 (1998).
-
(1998)
J. Virol.
, vol.72
, pp. 7709-7714
-
-
Hann, L.E.1
Cook, W.J.2
Uprichard, S.L.3
Knipe, D.M.4
Coen, D.M.5
-
35
-
-
0025651655
-
Inactivation of the shutoff gene (UL41) of herpes simplex virus types 1 and 2
-
Fenwick, M. L. & Everett, R. D. Inactivation of the shutoff gene (UL41) of herpes simplex virus types 1 and 2. J. Gen. Virol. 71, 2961-2967 (1990).
-
(1990)
J. Gen. Virol.
, vol.71
, pp. 2961-2967
-
-
Fenwick, M.L.1
Everett, R.D.2
-
36
-
-
77956864901
-
Role of herpes simplex virus ICP27 in the degradation of mRNA by virion host shutoff RNase
-
Taddeo, B., Zhang, W. & Roizman, B. Role of herpes simplex virus ICP27 in the degradation of mRNA by virion host shutoff RNase. J. Virol. 84, 10182-10190 (2010).
-
(2010)
J. Virol.
, vol.84
, pp. 10182-10190
-
-
Taddeo, B.1
Zhang, W.2
Roizman, B.3
-
37
-
-
84883856031
-
The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells
-
Castelo-Branco, G. et al. The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells. Genome Biol 14, R98 (2013).
-
(2013)
Genome Biol
, vol.14
, pp. R98
-
-
Castelo-Branco, G.1
-
38
-
-
0024786729
-
Herpes simplex virus induces a processing factor that stimulates poly(A) site usage
-
McLauchlan, J., Simpson, S. & Clements, J. B. Herpes simplex virus induces a processing factor that stimulates poly(A) site usage. Cell 59, 1093-1105 (1989).
-
(1989)
Cell
, vol.59
, pp. 1093-1105
-
-
McLauchlan, J.1
Simpson, S.2
Clements, J.B.3
-
39
-
-
0026480332
-
Herpes simplex virus IE63 acts at the posttranscriptional level to stimulate viral mRNA 3' processing
-
McLauchlan, J., Phelan, A., Loney, C., Sandri-Goldin, R. M. & Clements, J. B. Herpes simplex virus IE63 acts at the posttranscriptional level to stimulate viral mRNA 3' processing. J. Virol. 66, 6939-6945 (1992).
-
(1992)
J. Virol.
, vol.66
, pp. 6939-6945
-
-
McLauchlan, J.1
Phelan, A.2
Loney, C.3
Sandri-Goldin, R.M.4
Clements, J.B.5
-
40
-
-
0030067704
-
Regulation of herpes simplex virus poly (A) site usage and the action of immediate-early protein IE63 in the early-late switch
-
McGregor, F., Phelan, A., Dunlop, J. & Clements, J. B. Regulation of herpes simplex virus poly (A) site usage and the action of immediate-early protein IE63 in the early-late switch. J. Virol. 70, 1931-1940 (1996).
-
(1996)
J. Virol.
, vol.70
, pp. 1931-1940
-
-
McGregor, F.1
Phelan, A.2
Dunlop, J.3
Clements, J.B.4
-
41
-
-
0035837047
-
Herpes simplex virus 1 ICP27 is required for transcription of two viral late (gamma 2) genes in infected cells
-
Jean, S., LeVan, K. M., Song, B., Levine, M. & Knipe, D. M. Herpes simplex virus 1 ICP27 is required for transcription of two viral late (gamma 2) genes in infected cells. Virology 283, 273-284 (2001).
-
(2001)
Virology
, vol.283
, pp. 273-284
-
-
Jean, S.1
Levan, K.M.2
Song, B.3
Levine, M.4
Knipe, D.M.5
-
42
-
-
0031041648
-
Herpes simplex virus immediate-early proteins ICP0 and ICP4 activate the endogenous human alpha-globin gene in nonerythroid cells
-
Cheung, P., Panning, B. & Smiley, J. R. Herpes simplex virus immediate-early proteins ICP0 and ICP4 activate the endogenous human alpha-globin gene in nonerythroid cells. J. Virol. 71, 1784-1793 (1997).
-
(1997)
J. Virol.
, vol.71
, pp. 1784-1793
-
-
Cheung, P.1
Panning, B.2
Smiley, J.R.3
-
43
-
-
0033852606
-
Processing of alpha-globin and ICP0 mRNA in cells infected with herpes simplex virus type 1 ICP27 mutants
-
Ellison, K. S., Rice, S. A., Verity, R. & Smiley, J. R. Processing of alpha-globin and ICP0 mRNA in cells infected with herpes simplex virus type 1 ICP27 mutants. J. Virol. 74, 7307-7319 (2000).
-
(2000)
J. Virol.
, vol.74
, pp. 7307-7319
-
-
Ellison, K.S.1
Rice, S.A.2
Verity, R.3
Smiley, J.R.4
-
44
-
-
0033999272
-
Herpes simplex virus ICP27 induces cytoplasmic accumulation of unspliced polyadenylated alpha-globin pre-mRNA in infected HeLa cells
-
Cheung, P., Ellison, K. S., Verity, R. & Smiley, J. R. Herpes simplex virus ICP27 induces cytoplasmic accumulation of unspliced polyadenylated alpha-globin pre-mRNA in infected HeLa cells. J. Virol. 74, 2913-2919 (2000).
-
(2000)
J. Virol.
, vol.74
, pp. 2913-2919
-
-
Cheung, P.1
Ellison, K.S.2
Verity, R.3
Smiley, J.R.4
-
45
-
-
33644856084
-
Exon tethering in transcription by RNA polymerase II
-
Dye, M. J., Gromak, N. & Proudfoot, N. J. Exon tethering in transcription by RNA polymerase II. Mol. Cell 21, 849-859 (2006).
-
(2006)
Mol. Cell
, vol.21
, pp. 849-859
-
-
Dye, M.J.1
Gromak, N.2
Proudfoot, N.J.3
-
46
-
-
0028234467
-
The herpes simplex virus regulatory protein ICP27 contributes to the decrease in cellular mRNA levels during infection
-
Hardwicke, M. A. & Sandri-Goldin, R. M. The herpes simplex virus regulatory protein ICP27 contributes to the decrease in cellular mRNA levels during infection. J. Virol. 68, 4797-4810 (1994).
-
(1994)
J. Virol.
, vol.68
, pp. 4797-4810
-
-
Hardwicke, M.A.1
Sandri-Goldin, R.M.2
-
47
-
-
0026762610
-
A herpesvirus regulatory protein appears to act post-transcriptionally by affecting mRNA processing
-
Sandri-Goldin, R. M. & Mendoza, G. E. A herpesvirus regulatory protein appears to act post-transcriptionally by affecting mRNA processing. Genes Dev. 6, 848-863 (1992).
-
(1992)
Genes Dev.
, vol.6
, pp. 848-863
-
-
Sandri-Goldin, R.M.1
Mendoza, G.E.2
-
48
-
-
71049151501
-
Herpesvirus protein ICP27 switches PML isoform by altering mRNA splicing
-
Nojima, T. et al. Herpesvirus protein ICP27 switches PML isoform by altering mRNA splicing. Nucleic Acids Res. 37, 6515-6527 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6515-6527
-
-
Nojima, T.1
-
49
-
-
67349288523
-
TU-tagging: Cell typespecific RNA isolation from intact complex tissues
-
Miller, M. R., Robinson, K. J., Cleary, M. D. & Doe, C. Q. TU-tagging: cell typespecific RNA isolation from intact complex tissues. Nat. Methods 6, 439-441 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 439-441
-
-
Miller, M.R.1
Robinson, K.J.2
Cleary, M.D.3
Doe, C.Q.4
-
50
-
-
84872299649
-
Mouse TU tagging: A chemical/genetic intersectional method for purifying cell type-specific nascent RNA
-
Gay, L. et al. Mouse TU tagging: a chemical/genetic intersectional method for purifying cell type-specific nascent RNA. Genes Dev. 27, 98-115 (2013).
-
(2013)
Genes Dev.
, vol.27
, pp. 98-115
-
-
Gay, L.1
-
51
-
-
84870040446
-
Molecular profiling of activated neurons by phosphorylated ribosome capture
-
Knight, Z. A. et al. Molecular profiling of activated neurons by phosphorylated ribosome capture. Cell 151, 1126-1137 (2012).
-
(2012)
Cell
, vol.151
, pp. 1126-1137
-
-
Knight, Z.A.1
-
52
-
-
84901361401
-
Molecular profiling of neurons based on connectivity
-
Ekstrand, M. I. et al. Molecular profiling of neurons based on connectivity. Cell 157, 1230-1242 (2014).
-
(2014)
Cell
, vol.157
, pp. 1230-1242
-
-
Ekstrand, M.I.1
-
53
-
-
0026547375
-
Evidence that the herpes simplex virus immediate early protein ICP27 acts posttranscriptionally during infection to regulate gene expression
-
Smith, I. L., Hardwicke, M. A. & Sandri-Goldin, R. M. Evidence that the herpes simplex virus immediate early protein ICP27 acts posttranscriptionally during infection to regulate gene expression. Virology 186, 74-86 (1992).
-
(1992)
Virology
, vol.186
, pp. 74-86
-
-
Smith, I.L.1
Hardwicke, M.A.2
Sandri-Goldin, R.M.3
-
54
-
-
84887433583
-
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
-
t Hoen, P. A. et al. Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories. Nat. Biotechnol. 31, 1015-1022 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1015-1022
-
-
Hoen P A, T.1
-
55
-
-
84864453787
-
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
-
Ingolia, N. T., Brar, G. A., Rouskin, S., McGeachy, A. M. & Weissman, J. S. The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments. Nat. Protoc. 7, 1534-1550 (2012).
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1534-1550
-
-
Ingolia, N.T.1
Brar, G.A.2
Rouskin, S.3
McGeachy, A.M.4
Weissman, J.S.5
-
56
-
-
84883372948
-
Mining RNA-seq data for infections and contaminations
-
Bonfert, T., Csaba, G., Zimmer, R. & Friedel, C. C. Mining RNA-seq data for infections and contaminations. PLoS ONE 8, e73071 (2013).
-
(2013)
PLoS ONE
, vol.8
-
-
Bonfert, T.1
Csaba, G.2
Zimmer, R.3
Friedel, C.C.4
-
57
-
-
62349130698
-
Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
58
-
-
84871593783
-
A comprehensive evaluation of alignment algorithms in the context of RNA-seq
-
Lindner, R. & Friedel, C. C. A comprehensive evaluation of alignment algorithms in the context of RNA-seq. PLoS ONE 7, e52403 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Lindner, R.1
Friedel, C.C.2
-
59
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628 (2008).
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
60
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da, W., Sherman, B. T. & Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57 (2009).
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang Da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
61
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B 57, 289-300 (1995).
-
(1995)
J. R. Statist. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
62
-
-
79958090979
-
DREME: Motif discovery in transcription factor ChIP-seq data
-
Bailey, T. L. DREME: motif discovery in transcription factor ChIP-seq data. Bioinformatics 27, 1653-1659 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 1653-1659
-
-
Bailey, T.L.1
-
63
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T. L. et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-W208 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
-
64
-
-
84893763336
-
Means to an end: Mechanisms of alternative polyadenylation of messenger RNA precursors
-
Gruber, A. R., Martin, G., Keller, W. & Zavolan, M. Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. Wiley Interdiscip. Rev. RNA 5, 183-196 (2014).
-
(2014)
Wiley Interdiscip. Rev. RNA
, vol.5
, pp. 183-196
-
-
Gruber, A.R.1
Martin, G.2
Keller, W.3
Zavolan, M.4
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