-
1
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y. and Hochberg, Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. Ser. B Methodol. 57: 289-300.
-
(1995)
J. R. Stat. Soc. Ser. B Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
2
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein, J.A., Khodursky, A.B., Lin, P.H., Lin-Chao, S., and Cohen, S.N. 2002. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc. Natl. Acad. Sci. 99: 9697-9702.
-
(2002)
Proc. Natl. Acad. Sci
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
3
-
-
1542267833
-
Global analysis of Escherichia coli RNA degradosome function using DNA microarrays
-
Bernstein, J.A., Lin, P.H., Cohen, S.N., and Lin-Chao, S. 2004. Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. Proc. Natl. Acad. Sci. 101: 2758-2763.
-
(2004)
Proc. Natl. Acad. Sci
, vol.101
, pp. 2758-2763
-
-
Bernstein, J.A.1
Lin, P.H.2
Cohen, S.N.3
Lin-Chao, S.4
-
4
-
-
33744973775
-
Relief of microRNA-mediated translational repression in human cells subjected to stress
-
Bhattacharyya, S.N., Habermacher, R., Martine, U., Closs, E.I., and Filipowicz, W. 2006. Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125: 1111-1124.
-
(2006)
Cell
, vol.125
, pp. 1111-1124
-
-
Bhattacharyya, S.N.1
Habermacher, R.2
Martine, U.3
Closs, E.I.4
Filipowicz, W.5
-
5
-
-
33748450379
-
Complex modulation of cell type-specific signaling in response to type I interferons
-
Boxel-Dezaire, A.H., Rani, M.R., and Stark, G.R. 2006. Complex modulation of cell type-specific signaling in response to type I interferons. Immunity 25: 361-372.
-
(2006)
Immunity
, vol.25
, pp. 361-372
-
-
Boxel-Dezaire, A.H.1
Rani, M.R.2
Stark, G.R.3
-
6
-
-
0029461958
-
Short technical reports. Modification of the TRI reagent procedure for isolation of RNA from polysaccharide- and proteoglycan-rich sources
-
Chomczynski, P. and Mackey, K. 1995. Short technical reports. Modification of the TRI reagent procedure for isolation of RNA from polysaccharide- and proteoglycan-rich sources. Biotechniques 19: 942-945.
-
(1995)
Biotechniques
, vol.19
, pp. 942-945
-
-
Chomczynski, P.1
Mackey, K.2
-
7
-
-
13844281888
-
Biosynthetic labeling of RNA with uracil phosphoribosyl-transferase allows cell-specific microarray analysis of mRNA synthesis and decay
-
Cleary, M.D., Meiering, C.D., Jan, E., Guymon, R., and Boothroyd, J.C. 2005. Biosynthetic labeling of RNA with uracil phosphoribosyl-transferase allows cell-specific microarray analysis of mRNA synthesis and decay. Nat. Biotechnol. 23: 232-237.
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 232-237
-
-
Cleary, M.D.1
Meiering, C.D.2
Jan, E.3
Guymon, R.4
Boothroyd, J.C.5
-
8
-
-
0034977353
-
-
de Veer, M.J., Holko, M., Frevel, M., Walker, E., Der, S., Paranjape, J.M., Silverman, R.H., and Williams, B.R. 2001. Functional classification of interferon-stimulated genes identified using microarrays. J. Leukoc. Biol. 69: 912-920.
-
de Veer, M.J., Holko, M., Frevel, M., Walker, E., Der, S., Paranjape, J.M., Silverman, R.H., and Williams, B.R. 2001. Functional classification of interferon-stimulated genes identified using microarrays. J. Leukoc. Biol. 69: 912-920.
-
-
-
-
9
-
-
0036677451
-
Global analysis of stress-regulated mRNA turnover by using cDNA arrays
-
Fan, J., Yang, X., Wang, W., Wood III., W.H., Becker, K.G., and Gorospe, M. 2002. Global analysis of stress-regulated mRNA turnover by using cDNA arrays. Proc. Natl. Acad. Sci. 99: 10611-10616.
-
(2002)
Proc. Natl. Acad. Sci
, vol.99
, pp. 10611-10616
-
-
Fan, J.1
Yang, X.2
Wang, W.3
Wood III, W.H.4
Becker, K.G.5
Gorospe, M.6
-
10
-
-
0037223402
-
p38 Mitogen-activated protein kinase-dependent and -independent signaling of mRNA stability of AU-rich element-containing transcripts
-
Frevel, M.A., Bakheet, T., Silva, A.M., Hissong, J.G., Khabar, K.S., and Williams, B.R. 2003. p38 Mitogen-activated protein kinase-dependent and -independent signaling of mRNA stability of AU-rich element-containing transcripts. Mol. Cell. Biol. 23: 425-436.
-
(2003)
Mol. Cell. Biol
, vol.23
, pp. 425-436
-
-
Frevel, M.A.1
Bakheet, T.2
Silva, A.M.3
Hissong, J.G.4
Khabar, K.S.5
Williams, B.R.6
-
11
-
-
3242726930
-
Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms
-
Garcia-Martinez, J., Aranda, A., and Perez-Ortin, J.E. 2004. Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms. Mol. Cell 15: 303-313.
-
(2004)
Mol. Cell
, vol.15
, pp. 303-313
-
-
Garcia-Martinez, J.1
Aranda, A.2
Perez-Ortin, J.E.3
-
12
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
doi: 10.1186/gb-2004-5-10- r80
-
Gentleman, R.C., Carey, V.J., Bates, D.M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., et al. 2004. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol. 5: R80. doi: 10.1186/gb-2004-5-10- r80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
-
13
-
-
0035819859
-
Regulation of mRNA stability in mammalian cells
-
Guhaniyogi, J. and Brewer, G. 2001. Regulation of mRNA stability in mammalian cells. Gene 265: 11-23.
-
(2001)
Gene
, vol.265
, pp. 11-23
-
-
Guhaniyogi, J.1
Brewer, G.2
-
14
-
-
0033067906
-
Nuclear run-on assays: Assessing transcription by measuring density of engaged RNA polymerases
-
Hirayoshi, K. and Lis, J.T. 1999. Nuclear run-on assays: Assessing transcription by measuring density of engaged RNA polymerases. Methods Enzymol. 304: 351-362.
-
(1999)
Methods Enzymol
, vol.304
, pp. 351-362
-
-
Hirayoshi, K.1
Lis, J.T.2
-
15
-
-
20044388720
-
Involvement of microRNA in AU-rich element-mediated mRNA instability
-
Jing, Q., Huang, S., Guth, S., Zarubin, T., Motoyama, A., Chen, J., Di Padova, F., Lin, S.C., Gram, H., and Han, J. 2005. Involvement of microRNA in AU-rich element-mediated mRNA instability. Cell 120: 623-634.
-
(2005)
Cell
, vol.120
, pp. 623-634
-
-
Jing, Q.1
Huang, S.2
Guth, S.3
Zarubin, T.4
Motoyama, A.5
Chen, J.6
Di Padova, F.7
Lin, S.C.8
Gram, H.9
Han, J.10
-
16
-
-
34547495201
-
Microarray analysis of newly synthesized RNA in cells and animals
-
Kenzelmann, M., Maertens, S., Hergenhahn, M., Kueffer, S., Hotz-Wagenblatt, A., Li, L., Wang, S., Ittrich, C., Lemberger, T., Arribas, R., et al. 2007. Microarray analysis of newly synthesized RNA in cells and animals. Proc. Natl. Acad. Sci. 104: 6164-6169.
-
(2007)
Proc. Natl. Acad. Sci
, vol.104
, pp. 6164-6169
-
-
Kenzelmann, M.1
Maertens, S.2
Hergenhahn, M.3
Kueffer, S.4
Hotz-Wagenblatt, A.5
Li, L.6
Wang, S.7
Ittrich, C.8
Lemberger, T.9
Arribas, R.10
-
17
-
-
34249039031
-
Proinflammatory stimuli induce IKKα-mediated phosphorylation of PIAS1 to restrict inflammation and immunity
-
Liu, B., Yang, Y., Chernishof, V., Loo, R.R., Jang, H., Tahk, S., Yang, R., Mink, S., Shultz, D., Bellone, C.J., et al. 2007. Proinflammatory stimuli induce IKKα-mediated phosphorylation of PIAS1 to restrict inflammation and immunity. Cell 129: 903-914.
-
(2007)
Cell
, vol.129
, pp. 903-914
-
-
Liu, B.1
Yang, Y.2
Chernishof, V.3
Loo, R.R.4
Jang, H.5
Tahk, S.6
Yang, R.7
Mink, S.8
Shultz, D.9
Bellone, C.J.10
-
18
-
-
0018063623
-
Incorporation of 6-thioguanosine and 4-thiouridine into RNA. Application to isolation of newly synthesised RNA by affinity chromatography
-
Melvin, W.T., Milne, H.B., Slater, A.A., Allen, H.J., and Keir, H.M. 1978. Incorporation of 6-thioguanosine and 4-thiouridine into RNA. Application to isolation of newly synthesised RNA by affinity chromatography. Eur. J. Biochem. 92: 373-379.
-
(1978)
Eur. J. Biochem
, vol.92
, pp. 373-379
-
-
Melvin, W.T.1
Milne, H.B.2
Slater, A.A.3
Allen, H.J.4
Keir, H.M.5
-
19
-
-
18844457095
-
Mechanisms of type-I- and type-II-interferon- mediated signalling
-
Platanias, L.C. 2005. Mechanisms of type-I- and type-II-interferon- mediated signalling. Nat. Rev. Immunol. 5: 375-386.
-
(2005)
Nat. Rev. Immunol
, vol.5
, pp. 375-386
-
-
Platanias, L.C.1
-
21
-
-
4644288309
-
Microarray-based analyses of mRNA decay in the regulation of mammalian gene expression
-
Raghavan, A. and Bohjanen, P.R. 2004. Microarray-based analyses of mRNA decay in the regulation of mammalian gene expression. Brief. Funct. Genomic. Proteomic. 3: 112-124.
-
(2004)
Brief. Funct. Genomic. Proteomic
, vol.3
, pp. 112-124
-
-
Raghavan, A.1
Bohjanen, P.R.2
-
22
-
-
0037115826
-
Genomewide analysis of mRNA decay in resting and activated primary human T lymphocytes
-
Raghavan, A., Ogilvie, R.L., Reilly, C., Abelson, M.L., Raghavan, S., Vasdewani, J., Krathwohl, M., and Bohjanen, P.R. 2002. Genomewide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res. 30: 5529-5538.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 5529-5538
-
-
Raghavan, A.1
Ogilvie, R.L.2
Reilly, C.3
Abelson, M.L.4
Raghavan, S.5
Vasdewani, J.6
Krathwohl, M.7
Bohjanen, P.R.8
-
23
-
-
0024488977
-
The c-fos transcript is targeted for rapid decay by two distinct mRNA degradation pathways
-
Shyu, A.B., Greenberg, M.E., and Belasco, J.G. 1989. The c-fos transcript is targeted for rapid decay by two distinct mRNA degradation pathways. Genes & Dev. 3: 60-72.
-
(1989)
Genes & Dev
, vol.3
, pp. 60-72
-
-
Shyu, A.B.1
Greenberg, M.E.2
Belasco, J.G.3
-
24
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth, G.K. 2004. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3: Article3.
-
(2004)
Stat. Appl. Genet. Mol. Biol
, vol.3
-
-
Smyth, G.K.1
-
25
-
-
33748455338
-
Type I interferons in host defense
-
Stetson, D.B. and Medzhitov, R. 2006. Type I interferons in host defense. Immunity 25: 373-381.
-
(2006)
Immunity
, vol.25
, pp. 373-381
-
-
Stetson, D.B.1
Medzhitov, R.2
-
26
-
-
0029281062
-
Newly synthesised mRNA as a probe for identification of wound responsive genes from potatoes
-
Ussuf, K.K., Anikumar, G., and Nair, P.M. 1995. Newly synthesised mRNA as a probe for identification of wound responsive genes from potatoes. Indian J. Biochem. Biophys. 32: 78-83.
-
(1995)
Indian J. Biochem. Biophys
, vol.32
, pp. 78-83
-
-
Ussuf, K.K.1
Anikumar, G.2
Nair, P.M.3
-
27
-
-
0024287697
-
Selective isolation of newly synthesized mammalian mRNA after in vivo labeling with 4-thiouridine or 6-thioguanosine
-
Woodford, T.A., Schlegel, R., and Pardee, A.B. 1988. Selective isolation of newly synthesized mammalian mRNA after in vivo labeling with 4-thiouridine or 6-thioguanosine. Anal. Biochem. 171: 166-172.
-
(1988)
Anal. Biochem
, vol.171
, pp. 166-172
-
-
Woodford, T.A.1
Schlegel, R.2
Pardee, A.B.3
-
28
-
-
0041523923
-
Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes
-
Yang, E., van Nimwegen, E., Zavolan, M., Rajewsky, N., Schroeder, M., Magnasco, M., and Darnell Jr., J.E. 2003. Decay rates of human mRNAs: Correlation with functional characteristics and sequence attributes. Genome Res. 13: 1863-1872.
-
(2003)
Genome Res
, vol.13
, pp. 1863-1872
-
-
Yang, E.1
van Nimwegen, E.2
Zavolan, M.3
Rajewsky, N.4
Schroeder, M.5
Magnasco, M.6
Darnell Jr., J.E.7
-
29
-
-
19344375679
-
A cytomegaloviral protein reveals a dual role for STAT2 in IFN-γ signaling and antiviral responses
-
Zimmermann, A., Trilling, M., Wagner, M., Wilborn, M., Bubic, I., Jonjic, S., Koszinowski, U., and Hengel, H. 2005. A cytomegaloviral protein reveals a dual role for STAT2 in IFN-γ signaling and antiviral responses. J. Exp. Med. 201: 1543-1553.
-
(2005)
J. Exp. Med
, vol.201
, pp. 1543-1553
-
-
Zimmermann, A.1
Trilling, M.2
Wagner, M.3
Wilborn, M.4
Bubic, I.5
Jonjic, S.6
Koszinowski, U.7
Hengel, H.8
|