Molecular profiling of neurons based on connectivity

Cell

Volumn 157, Issue 5, 2014, Pages 1230-1242

  Ekstrand, Mats I ^a   Nectow, Alexander R ^a   Knight, Zachary A ^a   Latcha, Kaamashri N ^a   Pomeranz, Lisa E ^a   Friedman, Jeffrey M ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOPAMINE; GREEN FLUORESCENT PROTEIN; MESSENGER RNA; NANOBODY; ANTIBODY;

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CELL LABELING; CONNECTOME; CONTROLLED STUDY; DOPAMINERGIC NERVE CELL; FEMALE; GENE IDENTIFICATION; IMMUNOPRECIPITATION; MALE; MARKER GENE; MESENCEPHALON; MOUSE; NERVE CELL; NONHUMAN; NUCLEUS ACCUMBENS; PRIORITY JOURNAL; RIBOSOME; RNA TRANSLATION; VENTRAL TEGMENTUM; ANIMAL TISSUE; ARTIODACTYLA; NUCLEOTIDE SEQUENCE;

ANIMALS; ANTIBODIES; GREEN FLUORESCENT PROTEINS; IMMUNOPRECIPITATION; MICE, TRANSGENIC; NEUROBIOLOGY; NEUROIMAGING; NEURONS; NUCLEUS ACCUMBENS; PROTEIN BIOSYNTHESIS; RIBOSOMES;

EID: 84901361401     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2014.03.059     Document Type: Article

References (56)

1. B.N. Armbruster, X. Li, M.H. Pausch, S. Herlitze, and B.L. Roth Evolving the lock to fit the key to create a family of G protein-coupled receptors potently activated by an inert ligand Proc. Natl. Acad. Sci. USA 104 2007 5163 5168 (Pubitemid 47186193)
2. D. Atasoy, Y. Aponte, H.H. Su, and S.M. Sternson A FLEX switch targets Channelrhodopsin-2 to multiple cell types for imaging and long-range circuit mapping J. Neurosci. 28 2008 7025 7030
3. C.M. Bäckman, N. Malik, Y. Zhang, L. Shan, A. Grinberg, B.J. Hoffer, H. Westphal, and A.C. Tomac Characterization of a mouse strain expressing Cre recombinase from the 3′ untranslated region of the dopamine transporter locus Genesis 44 2006 383 390 (Pubitemid 44384315)
4. C.I. Bargmann Beyond the connectome: how neuromodulators shape neural circuits Bioessays 34 2012 458 465
5. E.S. Boyden, F. Zhang, E. Bamberg, G. Nagel, and K. Deisseroth Millisecond-timescale, genetically targeted optical control of neural activity Nat. Neurosci. 8 2005 1263 1268 (Pubitemid 43348147)
6. T. Bru, S. Salinas, and E.J. Kremer An update on canine adenovirus type 2 and its vectors Viruses 2 2010 2134 2153
7. D. Chaudhury, J.J. Walsh, A.K. Friedman, B. Juarez, S.M. Ku, J.W. Koo, D. Ferguson, H.C. Tsai, L. Pomeranz, and D.J. Christoffel et al. Rapid regulation of depression-related behaviours by control of midbrain dopamine neurons Nature 493 2013 532 536
8. C.Y. Chung, H. Seo, K.C. Sonntag, A. Brooks, L. Lin, and O. Isacson Cell type-specific gene expression of midbrain dopaminergic neurons reveals molecules involved in their vulnerability and protection Hum. Mol. Genet. 14 2005 1709 1725 (Pubitemid 41418045)
9. S. Croizier, G. Franchi-Bernard, C. Colard, F. Poncet, A. La Roche, and P.Y. Risold A comparative analysis shows morphofunctional differences between the rat and mouse melanin-concentrating hormone systems PLoS ONE 5 2010 e15471
10. G. Dölen, A. Darvishzadeh, K.W. Huang, and R.C. Malenka Social reward requires coordinated activity of nucleus accumbens oxytocin and serotonin Nature 501 2013 179 184
11. J.P. Doyle, J.D. Dougherty, M. Heiman, E.F. Schmidt, T.R. Stevens, G. Ma, S. Bupp, P. Shrestha, R.D. Shah, and M.L. Doughty et al. Application of a translational profiling approach for the comparative analysis of CNS cell types Cell 135 2008 749 762
12. D. Georgescu, R.M. Sears, J.D. Hommel, M. Barrot, C.A. Bolaños, D.J. Marsh, M.A. Bednarek, J.A. Bibb, E. Maratos-Flier, E.J. Nestler, and R.J. DiLeone The hypothalamic neuropeptide melanin-concentrating hormone acts in the nucleus accumbens to modulate feeding behavior and forced-swim performance J. Neurosci. 25 2005 2933 2940 (Pubitemid 40389251)
13. M. Heiman, A. Schaefer, S. Gong, J.D. Peterson, M. Day, K.E. Ramsey, M. Suárez-Fariñas, C. Schwarz, D.A. Stephan, and D.J. Surmeier et al. A translational profiling approach for the molecular characterization of CNS cell types Cell 135 2008 738 748
14. M. Helmstaedter, K.L. Briggman, S.C. Turaga, V. Jain, H.S. Seung, and W. Denk Connectomic reconstruction of the inner plexiform layer in the mouse retina Nature 500 2013 168 174
15. T.S. Hnasko, F.A. Perez, A.D. Scouras, E.A. Stoll, S.D. Gale, S. Luquet, P.E. Phillips, E.J. Kremer, and R.D. Palmiter Cre recombinase-mediated restoration of nigrostriatal dopamine in dopamine-deficient mice reverses hypophagia and bradykinesia Proc. Natl. Acad. Sci. USA 103 2006 8858 8863 (Pubitemid 43878108)
16. K.A. Kempadoo, C. Tourino, S.L. Cho, F. Magnani, G.M. Leinninger, G.D. Stuber, F. Zhang, M.G. Myers, K. Deisseroth, L. de Lecea, and A. Bonci Hypothalamic neurotensin projections promote reward by enhancing glutamate transmission in the VTA J. Neurosci. 33 2013 7618 7626
17. Z.A. Knight, K. Tan, K. Birsoy, S. Schmidt, J.L. Garrison, R.W. Wysocki, A. Emiliano, M.I. Ekstrand, and J.M. Friedman Molecular profiling of activated neurons by phosphorylated ribosome capture Cell 151 2012 1126 1137
18. S. Lammel, A. Hetzel, O. Häckel, I. Jones, B. Liss, and J. Roeper Unique properties of mesoprefrontal neurons within a dual mesocorticolimbic dopamine system Neuron 57 2008 760 773 (Pubitemid 351335346)
19. S. Lammel, D.I. Ion, J. Roeper, and R.C. Malenka Projection-specific modulation of dopamine neuron synapses by aversive and rewarding stimuli Neuron 70 2011 855 862
20. S. Lammel, B.K. Lim, C. Ran, K.W. Huang, M.J. Betley, K.M. Tye, K. Deisseroth, and R.C. Malenka Input-specific control of reward and aversion in the ventral tegmental area Nature 491 2012 212 217
21. E.S. Lein, M.J. Hawrylycz, N. Ao, M. Ayres, A. Bensinger, A. Bernard, A.F. Boe, M.S. Boguski, K.S. Brockway, and E.J. Byrnes et al. Genome-wide atlas of gene expression in the adult mouse brain Nature 445 2007 168 176 (Pubitemid 46095716)
22. X. Li, J. Qi, T. Yamaguchi, H.L. Wang, and M. Morales Heterogeneous composition of dopamine neurons of the rat A10 region: molecular evidence for diverse signaling properties Brain Struct. Funct. 218 2013 1159 1176
23. J.W. Lichtman, and W. Denk The big and the small: challenges of imaging the brain's circuits Science 334 2011 618 623
24. B.K. Lim, K.W. Huang, B.A. Grueter, P.E. Rothwell, and R.C. Malenka Anhedonia requires MC4R-mediated synaptic adaptations in nucleus accumbens Nature 487 2012 183 189
25. L. Lo, and D.J. Anderson A Cre-dependent, anterograde transsynaptic viral tracer for mapping output pathways of genetically marked neurons Neuron 72 2011 938 950
26. M.K. Lobo, S.L. Karsten, M. Gray, D.H. Geschwind, and X.W. Yang FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains Nat. Neurosci. 9 2006 443 452 (Pubitemid 43290975)
27. D.S. Ludwig, N.A. Tritos, J.W. Mastaitis, R. Kulkarni, E. Kokkotou, J. Elmquist, B. Lowell, J.S. Flier, and E. Maratos-Flier Melanin-concentrating hormone overexpression in transgenic mice leads to obesity and insulin resistance J. Clin. Invest. 107 2001 379 386 (Pubitemid 32157970)
28. C. Lüscher, and R.C. Malenka Drug-evoked synaptic plasticity in addiction: from molecular changes to circuit remodeling Neuron 69 2011 650 663
29. M.S. Maisak, J. Haag, G. Ammer, E. Serbe, M. Meier, A. Leonhardt, T. Schilling, A. Bahl, G.M. Rubin, and A. Nern et al. A directional tuning map of Drosophila elementary motion detectors Nature 500 2013 212 216
30. K.D. Micheva, B. Busse, N.C. Weiler, N. O'Rourke, and S.J. Smith Single-synapse analysis of a diverse synapse population: proteomic imaging methods and markers Neuron 68 2010 639 653
31. J.L. Morgan, and J.W. Lichtman Why not connectomics? Nat. Methods 10 2013 494 500
32. E.V. Mosharov, K.E. Larsen, E. Kanter, K.A. Phillips, K. Wilson, Y. Schmitz, D.E. Krantz, K. Kobayashi, R.H. Edwards, and D. Sulzer Interplay between cytosolic dopamine, calcium, and α-synuclein causes selective death of substantia nigra neurons Neuron 62 2009 218 229
33. S. Muyldermans Nanobodies: natural single-domain antibodies Annu. Rev. Biochem. 82 2013 775 797
34. Y.S. Oh, P. Gao, K.W. Lee, I. Ceglia, J.S. Seo, X. Zhang, J.H. Ahn, B.T. Chait, D.J. Patel, Y. Kim, and P. Greengard SMARCA3, a chromatin-remodeling factor, is required for p11-dependent antidepressant action Cell 152 2013 831 843
35. F. Osakada, and E.M. Callaway Design and generation of recombinant rabies virus vectors Nat. Protoc. 8 2013 1583 1601
36. J. Ries, C. Kaplan, E. Platonova, H. Eghlidi, and H. Ewers A simple, versatile method for GFP-based super-resolution microscopy via nanobodies Nat. Methods 9 2012 582 584
37. U. Rothbauer, K. Zolghadr, S. Tillib, D. Nowak, L. Schermelleh, A. Gahl, N. Backmann, K. Conrath, S. Muyldermans, M.C. Cardoso, and H. Leonhardt Targeting and tracing antigens in live cells with fluorescent nanobodies Nat. Methods 3 2006 887 889 (Pubitemid 44614722)
38. E. Sanz, L. Yang, T. Su, D.R. Morris, G.S. McKnight, and P.S. Amieux Cell-type-specific isolation of ribosome-associated mRNA from complex tissues Proc. Natl. Acad. Sci. USA 106 2009 13939 13944
39. E.F. Schmidt, J.L. Warner-Schmidt, B.G. Otopalik, S.B. Pickett, P. Greengard, and N. Heintz Identification of the cortical neurons that mediate antidepressant responses Cell 149 2012 1152 1163
40. S.R. Sesack, and A.A. Grace Cortico-Basal Ganglia reward network: microcircuitry Neuropsychopharmacology 35 2010 27 47
41. J.P. Silva, F. von Meyenn, J. Howell, B. Thorens, C. Wolfrum, and M. Stoffel Regulation of adaptive behaviour during fasting by hypothalamic Foxa2 Nature 462 2009 646 650
42. S.A. Stanley, A.I. Domingos, L. Kelly, A. Garfield, S. Damanpour, L. Heisler, and J. Friedman Profiling of glucose-sensing neurons reveals that GHRH neurons are activated by hypoglycemia Cell Metab. 18 2013 596 607
43. K. Sugino, C.M. Hempel, M.N. Miller, A.M. Hattox, P. Shapiro, C. Wu, Z.J. Huang, and S.B. Nelson Molecular taxonomy of major neuronal classes in the adult mouse forebrain Nat. Neurosci. 9 2006 99 107 (Pubitemid 43011915)
44. P. Svenningsson, K. Chergui, I. Rachleff, M. Flajolet, X. Zhang, M. El Yacoubi, J.M. Vaugeois, G.G. Nomikos, and P. Greengard Alterations in 5-HT1B receptor function by p11 in depression-like states Science 311 2006 77 80 (Pubitemid 43063061)
45. S.Y. Takemura, A. Bharioke, Z. Lu, A. Nern, S. Vitaladevuni, P.K. Rivlin, W.T. Katz, D.J. Olbris, S.M. Plaza, and P. Winston et al. A visual motion detection circuit suggested by Drosophila connectomics Nature 500 2013 175 181
46. J.C. Tang, T. Szikra, Y. Kozorovitskiy, M. Teixiera, B.L. Sabatini, B. Roska, and C.L. Cepko A nanobody-based system using fluorescent proteins as scaffolds for cell-specific gene manipulation Cell 154 2013 928 939
47. R.Y. Tsien The green fluorescent protein Annu. Rev. Biochem. 67 1998 509 544 (Pubitemid 28411137)
48. K.M. Tye, J.J. Mirzabekov, M.R. Warden, E.A. Ferenczi, H.C. Tsai, J. Finkelstein, S.Y. Kim, A. Adhikari, K.R. Thompson, and A.S. Andalman et al. Dopamine neurons modulate neural encoding and expression of depression-related behaviour Nature 493 2013 537 541
49. N.R. Wall, I.R. Wickersham, A. Cetin, M. De La Parra, and E.M. Callaway Monosynaptic circuit tracing in vivo through Cre-dependent targeting and complementation of modified rabies virus Proc. Natl. Acad. Sci. USA 107 2010 21848 21853
50. N.R. Wall, M. De La Parra, E.M. Callaway, and A.C. Kreitzer Differential innervation of direct- and indirect-pathway striatal projection neurons Neuron 79 2013 347 360
51. J.G. White, E. Southgate, J.N. Thomson, and S. Brenner The structure of the nervous system of the nematode Caenorhabditis elegans Philos. Trans. R. Soc. Lond. B Biol. Sci. 314 1986 1 340
52. I.R. Wickersham, S. Finke, K.K. Conzelmann, and E.M. Callaway Retrograde neuronal tracing with a deletion-mutant rabies virus Nat. Methods 4 2007 47 49 (Pubitemid 46029475)
53. Liu, A. (1999). Construction of a Novel PRV-Bartha Infectious Clone. Undergraduate thesis (Princeton, NJ: Princeton University).
54. G.A. Smith, and L.W. Enquist Construction and transposon mutagenesis in Escherichia coli of a full-length infectious clone of pseudorabies virus, an alphaherpesvirus J. Virol. 73 1999 6405 6414 (Pubitemid 29327818)
55. G.A. Smith, and L.W. Enquist A self-recombining bacterial artificial chromosome and its application for analysis of herpesvirus pathogenesis Proc. Natl. Acad. Sci. USA 97 2000 4873 4878 (Pubitemid 30238650)
56. S. Warming, N. Costantino, D.L. Court, N.A. Jenkins, and N.G. Copeland Simple and highly efficient BAC recombineering using galK selection Nucleic Acids Res. 33 2005 e36