-
1
-
-
67649391053
-
Clostridium difficile infection: New developments in epidemiology and pathogenesis
-
Rupnik M, Wilcox MH, Gerding DN. 2009. Clostridium difficile infection: new developments in epidemiology and pathogenesis. Nat Rev Microbiol 7:526–536. http://dx.doi.org/10.1038/nrmicro2164.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 526-536
-
-
Rupnik, M.1
Wilcox, M.H.2
Gerding, D.N.3
-
2
-
-
80053253206
-
Biology of Clostridium difficile: Implications for epidemiology and diagnosis
-
Carroll KC, Bartlett JG. 2011. Biology of Clostridium difficile: implications for epidemiology and diagnosis. Annu Rev Microbiol 65:501–521. http://dx.doi.org/10.1146/annurev-micro-090110-102824.
-
(2011)
Annu Rev Microbiol
, vol.65
, pp. 501-521
-
-
Carroll, K.C.1
Bartlett, J.G.2
-
3
-
-
84884510020
-
Diverse sources of C. Difficile infection identified on whole-genome sequencing
-
Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O’Connor L, Ip CL, Golubchik T, Batty EM, Finney JM, Wyllie DH, Didelot X, Piazza P, Bowden R, Dingle KE, Harding RM, Crook DW, Wilcox MH, Peto TE, Walker AS. 2013. Diverse sources of C. difficile infection identified on whole-genome sequencing. N Engl J Med 369:1195–1205. http://dx.doi.org/10.1056/NEJMoa1216064.
-
(2013)
N Engl J Med
, vol.369
, pp. 1195-1205
-
-
Eyre, D.W.1
Cule, M.L.2
Wilson, D.J.3
Griffiths, D.4
Vaughan, A.5
O’Connor, L.6
Ip, C.L.7
Golubchik, T.8
Batty, E.M.9
Finney, J.M.10
Wyllie, D.H.11
Didelot, X.12
Piazza, P.13
Bowden, R.14
Dingle, K.E.15
Harding, R.M.16
Crook, D.W.17
Wilcox, M.H.18
Peto, T.E.19
Walker, A.S.20
more..
-
4
-
-
84863694101
-
Burden of Clostridium difficile on the healthcare system
-
Dubberke ER, Olsen MA. 2012. Burden of Clostridium difficile on the healthcare system. Clin Infect Dis 55(Suppl 2):S88-S92. http://dx.doi.org/10.1093/cid/cis335.
-
(2012)
Clin Infect Dis
, vol.55
, pp. S88-S92
-
-
Dubberke, E.R.1
Olsen, M.A.2
-
5
-
-
84864821482
-
The Clostridium difficile spo0A gene is a persistence and transmission factor
-
Deakin LJ, Clare S, Fagan RP, Dawson LF, Pickard DJ, West MR, Wren BW, Fairweather NF, Dougan G, Lawley TD. 2012. The Clostridium difficile spo0A gene is a persistence and transmission factor. Infect Immun 80:2704–2711. http://dx.doi.org/10.1128/IAI.00147-12.
-
(2012)
Infect Immun
, vol.80
, pp. 2704-2711
-
-
Deakin, L.J.1
Clare, S.2
Fagan, R.P.3
Dawson, L.F.4
Pickard, D.J.5
West, M.R.6
Wren, B.W.7
Fairweather, N.F.8
Dougan, G.9
Lawley, T.D.10
-
6
-
-
77958554415
-
Use of purified Clostridium difficile spores to facilitate evaluation of health care disinfection regimens
-
Lawley TD, Clare S, Deakin LJ, Goulding D, Yen JL, Raisen C, Brandt C, Lovell J, Cooke F, Clark TG, Dougan G. 2010. Use of purified Clostridium difficile spores to facilitate evaluation of health care disinfection regimens. Appl Environ Microbiol 76:6895–6900. http://dx.doi.org/10.1128/AEM.00718-10.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6895-6900
-
-
Lawley, T.D.1
Clare, S.2
Deakin, L.J.3
Goulding, D.4
Yen, J.L.5
Raisen, C.6
Brandt, C.7
Lovell, J.8
Cooke, F.9
Clark, T.G.10
Dougan, G.11
-
7
-
-
39749111479
-
Measures to control and prevent Clostridium difficile infection
-
Gerding DN, Muto CA, Owens RC, Jr. 2008. Measures to control and prevent Clostridium difficile infection. Clin Infect Dis 46(Suppl 1): S43–S49. http://dx.doi.org/10.1086/521861.
-
(2008)
Clin Infect Dis
, vol.46
, pp. S43-S49
-
-
Gerding, D.N.1
Muto, C.A.2
Owens, R.C.3
-
8
-
-
30544443489
-
A comparative genomic view of clostridial sporulation and physiology
-
Paredes CJ, Alsaker KV, Papoutsakis ET. 2005. A comparative genomic view of clostridial sporulation and physiology. Nat Rev Microbiol 3:969–978. http://dx.doi.org/10.1038/nrmicro1288.
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 969-978
-
-
Paredes, C.J.1
Alsaker, K.V.2
Papoutsakis, E.T.3
-
9
-
-
79959354609
-
The key sigma factor of transition phase, SigH, controls sporulation, metabolism, and virulence factor expression in Clostridium difficile
-
Saujet L, Monot M, Dupuy B, Soutourina O, Martin-Verstraete I. 2011. The key sigma factor of transition phase, SigH, controls sporulation, metabolism, and virulence factor expression in Clostridium difficile. J Bacteriol 193:3186–3196. http://dx.doi.org/10.1128/JB.00272-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 3186-3196
-
-
Saujet, L.1
Monot, M.2
Dupuy, B.3
Soutourina, O.4
Martin-Verstraete, I.5
-
10
-
-
71749105366
-
Characterization of the sporulation initiation pathway of Clostridium difficile and its role in toxin production
-
Underwood S, Guan S, Vijayasubhash V, Baines SD, Graham L, Lewis RJ, Wilcox MH, Stephenson K. 2009. Characterization of the sporulation initiation pathway of Clostridium difficile and its role in toxin production. J Bacteriol 191:7296–7305. http://dx.doi.org/10.1128/JB.00882-09.
-
(2009)
J Bacteriol
, vol.191
, pp. 7296-7305
-
-
Underwood, S.1
Guan, S.2
Vijayasubhash, V.3
Baines, S.D.4
Graham, L.5
Lewis, R.J.6
Wilcox, M.H.7
Stephenson, K.8
-
11
-
-
84887306016
-
The spore differentiation pathway in the enteric pathogen Clostridium difficile
-
Pereira FC, Saujet L, Tomé AR, Serrano M, Monot M, Couture-Tosi E, Martin-Verstraete I, Dupuy B, Henriques AO. 2013. The spore differentiation pathway in the enteric pathogen Clostridium difficile. PLoS Genet 9:e1003782. http://dx.doi.org/10.1371/journal.pgen.1003782.
-
(2013)
Plos Genet
, vol.9
-
-
Pereira, F.C.1
Saujet, L.2
Tomé, A.R.3
Serrano, M.4
Monot, M.5
Couture-Tosi, E.6
Martin-Verstraete, I.7
Dupuy, B.8
Henriques, A.O.9
-
12
-
-
84887269162
-
Genome-wide analysis of cell type-specific gene transcription during spore formation in Clostridium difficile
-
Saujet L, Pereira FC, Serrano M, Soutourina O, Monot M, Shelyakin PV, Gelfand MS, Dupuy B, Henriques AO, Martin-Verstraete I. 2013. Genome-wide analysis of cell type-specific gene transcription during spore formation in Clostridium difficile. PLoS Genet 9:e1003756. http://dx.doi.org/10.1371/journal.pgen.1003756.
-
(2013)
Plos Genet
, vol.9
-
-
Saujet, L.1
Pereira, F.C.2
Serrano, M.3
Soutourina, O.4
Monot, M.5
Shelyakin, P.V.6
Gelfand, M.S.7
Dupuy, B.8
Henriques, A.O.9
Martin-Verstraete, I.10
-
13
-
-
84884601793
-
Global analysis of the sporulation pathway of Clostridium difficile
-
Fimlaid KA, Bond JP, Schutz KC, Putnam EE, Leung JM, Lawley TD, Shen A. 2013. Global analysis of the sporulation pathway of Clostridium difficile. PLoS Genet 9:e1003660. http://dx.doi.org/10.1371/journal.pgen.1003660.
-
(2013)
Plos Genet
, vol.9
-
-
Fimlaid, K.A.1
Bond, J.P.2
Schutz, K.C.3
Putnam, E.E.4
Leung, J.M.5
Lawley, T.D.6
Shen, A.7
-
14
-
-
77956533047
-
Hierarchical evolution of the bacterial sporulation network
-
de Hoon MJ, Eichenberger P, Vitkup D. 2010. Hierarchical evolution of the bacterial sporulation network. Curr Biol 20:R735–R745. http://dx.doi.org/10.1016/j.cub.2010.06.031.
-
(2010)
Curr Biol
, vol.20
, pp. R735-R745
-
-
De Hoon, M.J.1
Eichenberger, P.2
Vitkup, D.3
-
15
-
-
14044268828
-
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis
-
Steil L, Serrano M, Henriques AO, Völker U. 2005. Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis. Microbiology 151:399–420. http://dx.doi.org/10.1099/mic.0.27493-0.
-
(2005)
Microbiology
, vol.151
, pp. 399-420
-
-
Steil, L.1
Serrano, M.2
Henriques, A.O.3
Völker, U.4
-
16
-
-
8844240734
-
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
-
Eichenberger P, Fujita M, Jensen ST, Conlon EM, Rudner DZ, Wang ST, Ferguson C, Haga K, Sato T, Liu JS, Losick R. 2004. The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis. PLoS Biol 2:e328. http://dx.doi.org/10.1371/journal.pbio.0020328.
-
(2004)
Plos Biol
, vol.2
-
-
Eichenberger, P.1
Fujita, M.2
Jensen, S.T.3
Conlon, E.M.4
Rudner, D.Z.5
Wang, S.T.6
Ferguson, C.7
Haga, K.8
Sato, T.9
Liu, J.S.10
Losick, R.11
-
17
-
-
33645097172
-
The forespore line of gene expression in Bacillus subtilis
-
Wang ST, Setlow B, Conlon EM, Lyon JL, Imamura D, Sato T, Setlow P, Losick R, Eichenberger P. 2006. The forespore line of gene expression in Bacillus subtilis. J Mol Biol 358:16-37. http://dx.doi.org/10.1016/j.jmb.2006.01.059.
-
(2006)
J Mol Biol
, vol.358
, pp. 16-37
-
-
Wang, S.T.1
Setlow, B.2
Conlon, E.M.3
Lyon, J.L.4
Imamura, D.5
Sato, T.6
Setlow, P.7
Losick, R.8
Eichenberger, P.9
-
18
-
-
84867988931
-
Genomic determinants of sporulation in Bacilli and Clostridia: Towards the minimal set of sporulation-specific genes
-
Galperin MY, Mekhedov SL, Puigbo P, Smirnov S, Wolf YI, Rigden DJ. 2012. Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes. Environ Microbiol 14:2870–2890. http://dx.doi.org/10.1111/j.1462-2920.2012.02841.x.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2870-2890
-
-
Galperin, M.Y.1
Mekhedov, S.L.2
Puigbo, P.3
Smirnov, S.4
Wolf, Y.I.5
Rigden, D.J.6
-
19
-
-
71749102588
-
The ClosTron: Mutagenesis in Clostridium refined and streamlined
-
Heap JT, Kuehne SA, Ehsaan M, Cartman ST, Cooksley CM, Scott JC, Minton NP. 2010. The ClosTron: mutagenesis in Clostridium refined and streamlined. J Microbiol Methods 80:49–55. http://dx.doi.org/10.1016/j.mimet.2009.10.018.
-
(2010)
J Microbiol Methods
, vol.80
, pp. 49-55
-
-
Heap, J.T.1
Kuehne, S.A.2
Ehsaan, M.3
Cartman, S.T.4
Cooksley, C.M.5
Scott, J.C.6
Minton, N.P.7
-
20
-
-
84873529552
-
Expanding the repertoire of gene tools for precise manipulation of the Clostridium difficile genome: Allelic exchange using pyrE alleles
-
Ng YK, Ehsaan M, Philip S, Collery MM, Janoir C, Collignon A, Cartman ST, Minton NP. 2013. Expanding the repertoire of gene tools for precise manipulation of the Clostridium difficile genome: allelic exchange using pyrE alleles. PLoS One 8:e56051. http://dx.doi.org/10.1371/journal.pone.0056051.
-
(2013)
Plos One
, vol.8
-
-
Ng, Y.K.1
Ehsaan, M.2
Philip, S.3
Collery, M.M.4
Janoir, C.5
Collignon, A.6
Cartman, S.T.7
Minton, N.P.8
-
21
-
-
84863792386
-
Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between the tcdC genotype and toxin production
-
Cartman ST, Kelly ML, Heeg D, Heap JT, Minton NP. 2012. Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between the tcdC genotype and toxin production. Appl Environ Microbiol 78:4683–4690. http://dx.doi.org/10.1128/AEM.00249-12.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 4683-4690
-
-
Cartman, S.T.1
Kelly, M.L.2
Heeg, D.3
Heap, J.T.4
Minton, N.P.5
-
22
-
-
84880647378
-
Improved bacterial mutagenesis by highfrequency allele exchange, demonstrated in Clostridium difficile and Streptococcus suis
-
Faulds-Pain A, Wren BW. 2013. Improved bacterial mutagenesis by highfrequency allele exchange, demonstrated in Clostridium difficile and Streptococcus suis. Appl Environ Microbiol 79:4768–4771. http://dx.doi.org/10.1128/AEM.01195-13.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 4768-4771
-
-
Faulds-Pain, A.1
Wren, B.W.2
-
23
-
-
0032555218
-
Systematic identification of essential genes by in vitro mariner mutagenesis
-
Akerley BJ, Rubin EJ, Camilli A, Lampe DJ, Robertson HM, Mekalanos JJ. 1998. Systematic identification of essential genes by in vitro mariner mutagenesis. Proc Natl Acad Sci U S A 95:8927–8932. http://dx.doi.org/10.1073/pnas.95.15.8927.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 8927-8932
-
-
Akerley, B.J.1
Rubin, E.J.2
Camilli, A.3
Lampe, D.J.4
Robertson, H.M.5
Mekalanos, J.J.6
-
24
-
-
84880876168
-
Approaches to querying bacterial genomes with transposon-insertion sequencing
-
Barquist L, Boinett CJ, Cain AK. 2013. Approaches to querying bacterial genomes with transposon-insertion sequencing. RNA Biol 10:1161–1169. http://dx.doi.org/10.4161/rna.24765.
-
(2013)
RNA Biol
, vol.10
, pp. 1161-1169
-
-
Barquist, L.1
Boinett, C.J.2
Cain, A.K.3
-
25
-
-
84879413726
-
Transposon insertion sequencing: A new tool for systems-level analysis of microorganisms
-
van Opijnen T, Camilli A. 2013. Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms. Nat Rev Microbiol 11: 435–442. http://dx.doi.org/10.1038/nrmicro3033.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 435-442
-
-
Van Opijnen, T.1
Camilli, A.2
-
26
-
-
0031833703
-
Factors affecting transposition of the Himar1 mariner transposon in vitro
-
Lampe DJ, Grant TE, Robertson HM. 1998. Factors affecting transposition of the Himar1 mariner transposon in vitro. Genetics 149:179–187.
-
(1998)
Genetics
, vol.149
, pp. 179-187
-
-
Lampe, D.J.1
Grant, T.E.2
Robertson, H.M.3
-
27
-
-
76649121515
-
A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile
-
Cartman ST, Minton NP. 2010. A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile. Appl Environ Microbiol 76:1103–1109. http://dx.doi.org/10.1128/AEM.02525-09.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1103-1109
-
-
Cartman, S.T.1
Minton, N.P.2
-
28
-
-
73249130761
-
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
-
Langridge GC, Phan MD, Turner DJ, Perkins TT, Parts L, Haase J, Charles I, Maskell DJ, Peters SE, Dougan G, Wain J, Parkhill J, Turner AK. 2009. Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. Genome Res 19:2308-2316. http://dx.doi.org/10.1101/gr.097097.109.
-
(2009)
Genome Res
, vol.19
, pp. 2308-2316
-
-
Langridge, G.C.1
Phan, M.D.2
Turner, D.J.3
Perkins, T.T.4
Parts, L.5
Haase, J.6
Charles, I.7
Maskell, D.J.8
Peters, S.E.9
Dougan, G.10
Wain, J.11
Parkhill, J.12
Turner, A.K.13
-
29
-
-
79961004324
-
Clostridium difficile has two parallel and essential Sec secretion systems
-
Fagan RP, Fairweather NF. 2011. Clostridium difficile has two parallel and essential Sec secretion systems. J Biol Chem 286:27483–27493. http://dx.doi.org/10.1074/jbc.M111.263889.
-
(2011)
J Biol Chem
, vol.286
, pp. 27483-27493
-
-
Fagan, R.P.1
Fairweather, N.F.2
-
30
-
-
0025143351
-
Regulated expression of heterologous genes in Bacillus subtilis using the Tn10 encoded tet regulatory elements
-
Geissendörfer M, Hillen W. 1990. Regulated expression of heterologous genes in Bacillus subtilis using the Tn10 encoded tet regulatory elements. Appl Microbiol Biotechnol 33:657-663. http://dx.doi.org/10.1007/BF00604933.
-
(1990)
Appl Microbiol Biotechnol
, vol.33
, pp. 657-663
-
-
Geissendörfer, M.1
Hillen, W.2
-
31
-
-
0036430107
-
Conjugative transfer of clostridial shuttle vectors from Escherichia coli to Clostridium difficile through circumvention of the restriction barrier
-
Purdy D, O’Keeffe TA, Elmore M, Herbert M, McLeod A, Bokori- Brown M, Ostrowski A, Minton NP. 2002. Conjugative transfer of clostridial shuttle vectors from Escherichia coli to Clostridium difficile through circumvention of the restriction barrier. Mol Microbiol 46:439- 452. http://dx.doi.org/10.1046/j.1365-2958.2002.03134.x.
-
(2002)
Mol Microbiol
, vol.46
, pp. 439-452
-
-
Purdy, D.1
O’Keeffe, T.A.2
Elmore, M.3
Herbert, M.4
McLeod, A.5
Bokori-Brown, M.6
Ostrowski, A.7
Minton, N.P.8
-
32
-
-
0029818461
-
A purified mariner transposase is sufficient to mediate transposition in vitro
-
Lampe DJ, Churchill ME, Robertson HM. 1996. A purified mariner transposase is sufficient to mediate transposition in vitro. EMBO J 15: 5470–5479.
-
(1996)
EMBO J
, vol.15
, pp. 5470-5479
-
-
Lampe, D.J.1
Churchill, M.E.2
Robertson, H.M.3
-
33
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945. http://dx.doi.org/10.1093/bioinformatics/16.10.944.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
34
-
-
0029564162
-
Nucleotide sequence and regulation of a new putative cell wall hydrolase gene, cwlD, which affects germination in Bacillus subtilis
-
Sekiguchi J, Akeo K, Yamamoto H, Khasanov FK, Alonso JC, Kuroda A. 1995. Nucleotide sequence and regulation of a new putative cell wall hydrolase gene, cwlD, which affects germination in Bacillus subtilis. J Bacteriol 177:5582–5589.
-
(1995)
J Bacteriol
, vol.177
, pp. 5582-5589
-
-
Sekiguchi, J.1
Akeo, K.2
Yamamoto, H.3
Khasanov, F.K.4
Alonso, J.C.5
Kuroda, A.6
-
35
-
-
68249127846
-
Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis
-
Doan T, Morlot C, Meisner J, Serrano M, Henriques AO, Moran CP, Jr, Rudner DZ. 2009. Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis. PLoS Genet 5:e1000566. http://dx.doi.org/10.1371/journal.pgen.1000566.
-
(2009)
Plos Genet
, vol.5
-
-
Doan, T.1
Morlot, C.2
Meisner, J.3
Serrano, M.4
Henriques, A.O.5
Moran, C.P.6
Rudner, D.Z.7
-
36
-
-
0034608820
-
The transcriptional profile of early to middle sporulation in Bacillus subtilis
-
Fawcett P, Eichenberger P, Losick R, Youngman P. 2000. The transcriptional profile of early to middle sporulation in Bacillus subtilis. Proc Natl Acad SciUSA 97:8063–8068. http://dx.doi.org/10.1073/pnas.140209597.
-
(2000)
Proc Natl Acad Sciusa
, vol.97
, pp. 8063-8068
-
-
Fawcett, P.1
Eichenberger, P.2
Losick, R.3
Youngman, P.4
-
37
-
-
84874693324
-
SpoIVA and SipL are Clostridium difficile spore morphogenetic proteins
-
Putnam EE, Nock AM, Lawley TD, Shen A. 2013. SpoIVA and SipL are Clostridium difficile spore morphogenetic proteins. J Bacteriol 195: 1214–1225. http://dx.doi.org/10.1128/JB.02181-12.
-
(2013)
J Bacteriol
, vol.195
, pp. 1214-1225
-
-
Putnam, E.E.1
Nock, A.M.2
Lawley, T.D.3
Shen, A.4
-
38
-
-
84871990888
-
Emergence and global spread of epidemic healthcare-associated Clostridium difficile
-
He M, Miyajima F, Roberts P, Ellison L, Pickard DJ, Martin MJ, Connor TR, Harris SR, Fairley D, Bamford KB, D’Arc S, Brazier J, Brown D, Coia JE, Douce G, Gerding D, Kim HJ, Koh TH, Kato H, Senoh M, Louie T, Michell S, Butt E, Peacock SJ, Brown NM, Riley T, Songer G, Wilcox M, Pirmohamed M, Kuijper E, Hawkey P, Wren BW, Dougan G, Parkhill J, Lawley TD. 2013. Emergence and global spread of epidemic healthcare-associated Clostridium difficile. Nat Genet 45: 109–113. http://dx.doi.org/10.1038/ng.2478.
-
(2013)
Nat Genet
, vol.45
, pp. 109-113
-
-
He, M.1
Miyajima, F.2
Roberts, P.3
Ellison, L.4
Pickard, D.J.5
Martin, M.J.6
Connor, T.R.7
Harris, S.R.8
Fairley, D.9
Bamford, K.B.10
D’Arc, S.11
Brazier, J.12
Brown, D.13
Coia, J.E.14
Douce, G.15
Gerding, D.16
Kim, H.J.17
Koh, T.H.18
Kato, H.19
Senoh, M.20
Louie, T.21
Michell, S.22
Butt, E.23
Peacock, S.J.24
Brown, N.M.25
Riley, T.26
Songer, G.27
Wilcox, M.28
Pirmohamed, M.29
Kuijper, E.30
Hawkey, P.31
Wren, B.W.32
Dougan, G.33
Parkhill, J.34
Lawley, T.D.35
more..
-
39
-
-
84877290776
-
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium
-
Barquist L, Langridge GC, Turner DJ, Phan MD, Turner AK, Bateman A, Parkhill J, Wain J, Gardner PP. 2013. A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium. Nucleic Acids Res 41:4549–4564. http://dx.doi.org/10.1093/nar/gkt148.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 4549-4564
-
-
Barquist, L.1
Langridge, G.C.2
Turner, D.J.3
Phan, M.D.4
Turner, A.K.5
Bateman, A.6
Parkhill, J.7
Wain, J.8
Gardner, P.P.9
-
40
-
-
84920653323
-
SpoIIID-mediated regulation of sigma function during Clostridium difficile sporulation
-
Pishdadian K, Fimlaid KA, Shen A. 2015. SpoIIID-mediated regulation of sigma function during Clostridium difficile sporulation. Mol Microbiol 95:189–208. http://dx.doi.org/10.1111/mmi.12856.
-
(2015)
Mol Microbiol
, vol.95
, pp. 189-208
-
-
Pishdadian, K.1
Fimlaid, K.A.2
Shen, A.3
-
41
-
-
84897516139
-
Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism
-
Pettit LJ, Browne HP, Yu L, Smits WK, Fagan RP, Barquist L, Martin MJ, Goulding D, Duncan SH, Flint HJ, Dougan G, Choudhary JS, Lawley TD. 2014. Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism. BMCGenomics 15:160. http://dx.doi.org/10.1186/1471-2164-15-160.
-
(2014)
Bmcgenomics
, vol.15
, pp. 160
-
-
Pettit, L.J.1
Browne, H.P.2
Yu, L.3
Smits, W.K.4
Fagan, R.P.5
Barquist, L.6
Martin, M.J.7
Goulding, D.8
Duncan, S.H.9
Flint, H.J.10
Dougan, G.11
Choudhary, J.S.12
Lawley, T.D.13
-
42
-
-
75149112859
-
SleC is essential for germination of Clostridium difficile spores in nutrient-rich medium supplemented with the bile salt taurocholate
-
Burns DA, Heap JT, Minton NP. 2010. SleC is essential for germination of Clostridium difficile spores in nutrient-rich medium supplemented with the bile salt taurocholate. J Bacteriol 192:657-664. http://dx.doi.org/10.1128/JB.01209-09.
-
(2010)
J Bacteriol
, vol.192
, pp. 657-664
-
-
Burns, D.A.1
Heap, J.T.2
Minton, N.P.3
-
44
-
-
84903364041
-
Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development
-
Moule MG, Hemsley CM, Seet Q, Guerra-Assunção JA, Lim J, Sarkar- Tyson M, Clark TG, Tan PB, Titball RW, Cuccui J, Wren BW. 2014. Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development. Mbio 5:e00926-13. http://dx.doi.org/10.1128/mBio.00926-13.
-
(2014)
Mbio
, vol.5
, pp. e00926-e00993
-
-
Moule, M.G.1
Hemsley, C.M.2
Seet, Q.3
Guerra-Assunção, J.A.4
Lim, J.5
Sarkar-Tyson, M.6
Clark, T.G.7
Tan, P.B.8
Titball, R.W.9
Cuccui, J.10
Wren, B.W.11
-
45
-
-
83355169571
-
Recent progress in Bacillus subtilis sporulation
-
Higgins D, Dworkin J. 2012. Recent progress in Bacillus subtilis sporulation. FEMS Microbiol Rev 36:131–148. http://dx.doi.org/10.1111/j.1574-6976.2011.00310.x.
-
(2012)
FEMS Microbiol Rev
, vol.36
, pp. 131-148
-
-
Higgins, D.1
Dworkin, J.2
-
46
-
-
84855393816
-
Surface layers of Clostridium difficile endospores
-
Permpoonpattana P, Tolls EH, Nadem R, Tan S, Brisson A, Cutting SM. 2011. Surface layers of Clostridium difficile endospores. J Bacteriol 193:6461–6470. http://dx.doi.org/10.1128/JB.05182-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 6461-6470
-
-
Permpoonpattana, P.1
Tolls, E.H.2
Nadem, R.3
Tan, S.4
Brisson, A.5
Cutting, S.M.6
-
47
-
-
84863661973
-
Relapse versus reinfection: Recurrent Clostridium difficile infection following treatment with fidaxomicin or vancomycin
-
Figueroa I, Johnson S, Sambol SP, Goldstein EJ, Citron DM, Gerding DN. 2012. Relapse versus reinfection: recurrent Clostridium difficile infection following treatment with fidaxomicin or vancomycin. Clin Infect Dis 55(Suppl 2):S104-S109. http://dx.doi.org/10.1093/cid/cis357.
-
(2012)
Clin Infect Dis
, vol.55
, pp. S104-S109
-
-
Figueroa, I.1
Johnson, S.2
Sambol, S.P.3
Goldstein, E.J.4
Citron, D.M.5
Gerding, D.N.6
-
48
-
-
0031973385
-
Regulated transcription of Clostridium difficile toxin genes
-
Dupuy B, Sonenshein AL. 1998. Regulated transcription of Clostridium difficile toxin genes. Mol Microbiol 27:107–120. http://dx.doi.org/10.1046/j.1365-2958.1998.00663.x.
-
(1998)
Mol Microbiol
, vol.27
, pp. 107-120
-
-
Dupuy, B.1
Sonenshein, A.L.2
-
49
-
-
79959449569
-
Immunization with Bacillus spores expressing toxin A peptide repeats protects against infection with Clostridium difficile strains producing toxins A and B
-
Permpoonpattana P, Hong HA, Phetcharaburanin J, Huang JM, Cook J, Fairweather NF, Cutting SM. 2011. Immunization with Bacillus spores expressing toxin A peptide repeats protects against infection with Clostridium difficile strains producing toxins A and B. Infect Immun 79: 2295–2302. http://dx.doi.org/10.1128/IAI.00130-11.
-
(2011)
Infect Immun
, vol.79
, pp. 2295-2302
-
-
Permpoonpattana, P.1
Hong, H.A.2
Phetcharaburanin, J.3
Huang, J.M.4
Cook, J.5
Fairweather, N.F.6
Cutting, S.M.7
-
50
-
-
84877765660
-
Transcriptional analysis of temporal gene expression in germinating Clostridium difficile 630 endospores
-
Dembek M, Stabler RA, Witney AA, Wren BW, Fairweather NF. 2013. Transcriptional analysis of temporal gene expression in germinating Clostridium difficile 630 endospores. PLoS One 8:e64011. http://dx.doi.org/10.1371/journal.pone.0064011.
-
(2013)
Plos One
, vol.8
-
-
Dembek, M.1
Stabler, R.A.2
Witney, A.A.3
Wren, B.W.4
Fairweather, N.F.5
-
51
-
-
84891760956
-
Data, information, knowledge and principle: Back to metabolism in KEGG
-
Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M. 2014. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res 42:D199–D205. http://dx.doi.org/10.1093/nar/gkt1076.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
52
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK. 2010. EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26:139-140. http://dx.doi.org/10.1093/bioinformatics/btp616.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
53
-
-
27344435774
-
Gene Set Enrichment Analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. 2005. Gene Set Enrichment Analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102:15545–15550. http://dx.doi.org/10.1073/pnas.0506580102.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
|