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Volumn 8, Issue 2, 2013, Pages

Expanding the Repertoire of Gene Tools for Precise Manipulation of the Clostridium difficile Genome: Allelic Exchange Using pyrE Alleles

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINE PROTEINASE;

EID: 84873529552     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0056051     Document Type: Article
Times cited : (127)

References (45)
  • 2
    • 67649391053 scopus 로고    scopus 로고
    • Clostridium difficile infection: new developments in epidemiology and pathogenesis
    • Rupnik M, Wilcox MH, Gerding DN, (2009) Clostridium difficile infection: new developments in epidemiology and pathogenesis. Nature Reviews Microbiology 7: 526-36.
    • (2009) Nature Reviews Microbiology , vol.7 , pp. 526-536
    • Rupnik, M.1    Wilcox, M.H.2    Gerding, D.N.3
  • 3
    • 0035350814 scopus 로고    scopus 로고
    • Clostridium beijerinckii and Clostridium difficile Detoxify Methylglyoxal by a Novel Mechanism Involving Glycerol Dehydrogenase
    • Liyanage H, Kashket S, Young M, Kashket ER, (2001) Clostridium beijerinckii and Clostridium difficile Detoxify Methylglyoxal by a Novel Mechanism Involving Glycerol Dehydrogenase. Applied Environmental Microbiology 67: 2004-2010.
    • (2001) Applied Environmental Microbiology , vol.67 , pp. 2004-2010
    • Liyanage, H.1    Kashket, S.2    Young, M.3    Kashket, E.R.4
  • 8
    • 84863792386 scopus 로고    scopus 로고
    • Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between tcdC genotype and toxin production
    • Cartman ST, Kelly ML, Heeg D, Heap JT, Minton NP, (2012) Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between tcdC genotype and toxin production. Applied Environmental Microbiology 78: 4683-90.
    • (2012) Applied Environmental Microbiology , vol.78 , pp. 4683-4690
    • Cartman, S.T.1    Kelly, M.L.2    Heeg, D.3    Heap, J.T.4    Minton, N.P.5
  • 9
    • 84860362257 scopus 로고    scopus 로고
    • Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker
    • Heap JT, Ehsaan M, Cooksley CM, Ng Y-K, Cartman ST, et al. (2012) Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker. Nucleic Acids Research 40 (8) (): e59.
    • (2012) Nucleic Acids Research , vol.40 , Issue.8
    • Heap, J.T.1    Ehsaan, M.2    Cooksley, C.M.3    Ng, Y.-K.4    Cartman, S.T.5
  • 10
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • Boeke JD, Croute F, Fink GR, (1984) A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Molecular and General Genetics 197: 345-346.
    • (1984) Molecular and General Genetics , vol.197 , pp. 345-346
    • Boeke, J.D.1    Croute, F.2    Fink, G.R.3
  • 11
    • 0031009872 scopus 로고    scopus 로고
    • Unmarked gene integration into the chromosome of Mycobacterium smegmatis via precise replacement of the pyrF gene
    • Knipfer N, Seth A, Shrader TE, (1997) Unmarked gene integration into the chromosome of Mycobacterium smegmatis via precise replacement of the pyrF gene. Plasmid 37: 129-140.
    • (1997) Plasmid , vol.37 , pp. 129-140
    • Knipfer, N.1    Seth, A.2    Shrader, T.E.3
  • 12
    • 0037215528 scopus 로고    scopus 로고
    • Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1
    • Sato T, Fukui T, Atomi H, Imanaka T, (2003) Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. Journal of Bacteriology 185: 210-220.
    • (2003) Journal of Bacteriology , vol.185 , pp. 210-220
    • Sato, T.1    Fukui, T.2    Atomi, H.3    Imanaka, T.4
  • 13
    • 0037309062 scopus 로고    scopus 로고
    • Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene
    • Bitan-Banin G, Ortenberg R, Mevarech M, (2003) Development of a gene knockout system for the halophilic archaeon Haloferax volcanii by use of the pyrE gene. Journal of Bacteriology 185: 772-778.
    • (2003) Journal of Bacteriology , vol.185 , pp. 772-778
    • Bitan-Banin, G.1    Ortenberg, R.2    Mevarech, M.3
  • 14
    • 70349462511 scopus 로고    scopus 로고
    • Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus
    • Deng L, Zhu H, Chen Z, Liang YX, She Q, (2009) Unmarked gene deletion and host-vector system for the hyperthermophilic crenarchaeon Sulfolobus islandicus. Extremophiles 13: 735-746.
    • (2009) Extremophiles , vol.13 , pp. 735-746
    • Deng, L.1    Zhu, H.2    Chen, Z.3    Liang, Y.X.4    She, Q.5
  • 15
    • 78049278436 scopus 로고    scopus 로고
    • Development of pyrF-Based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta Mutant
    • Tripathi SA, Olson DG, Argyros DA, Miller BB, Barrett TF, et al. (2010) Development of pyrF-Based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta Mutant. Applied Environmental Microbiology 76: 6591-6599.
    • (2010) Applied Environmental Microbiology , vol.76 , pp. 6591-6599
    • Tripathi, S.A.1    Olson, D.G.2    Argyros, D.A.3    Miller, B.B.4    Barrett, T.F.5
  • 16
    • 0019810772 scopus 로고
    • Isolation and partial characterization of three cryptic plasmids from strains of Clostridium butyricum
    • Minton NP, Morris JG, (1981) Isolation and partial characterization of three cryptic plasmids from strains of Clostridium butyricum. Journal of General Microbiology 127: 325-331.
    • (1981) Journal of General Microbiology , vol.127 , pp. 325-331
    • Minton, N.P.1    Morris, J.G.2
  • 18
    • 76649121515 scopus 로고    scopus 로고
    • A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile
    • Cartman ST, Minton NP, (2010) A mariner-based transposon system for in vivo random mutagenesis of Clostridium difficile. Applied Environmental Microbiology 76: 1103-1109.
    • (2010) Applied Environmental Microbiology , vol.76 , pp. 1103-1109
    • Cartman, S.T.1    Minton, N.P.2
  • 19
    • 0023708084 scopus 로고
    • The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to facilitate the use of sonicated DNA for nucleotide sequencing
    • Chambers SP, Prior SE, Barstow DA, Minton NP, (1988) The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to facilitate the use of sonicated DNA for nucleotide sequencing. Gene 68: 139-149.
    • (1988) Gene , vol.68 , pp. 139-149
    • Chambers, S.P.1    Prior, S.E.2    Barstow, D.A.3    Minton, N.P.4
  • 20
    • 75149112859 scopus 로고    scopus 로고
    • SleC is essential for germination of Clostridium difficile spores in nutrient-rich medium supplemented with the bile salt taurocholate
    • Burns DA, Heap JT, Minton NP, (2010) SleC is essential for germination of Clostridium difficile spores in nutrient-rich medium supplemented with the bile salt taurocholate. Journal of Bacteriology 192: 657-664.
    • (2010) Journal of Bacteriology , vol.192 , pp. 657-664
    • Burns, D.A.1    Heap, J.T.2    Minton, N.P.3
  • 21
    • 71749087319 scopus 로고    scopus 로고
    • Cwp84, a surface-associated cysteine protease, plays a role in the maturation of the surface layer of Clostridium difficile
    • Kirby JM, Ahern H, Roberts AK, Kumar V, Freeman Z, et al. (2009) Cwp84, a surface-associated cysteine protease, plays a role in the maturation of the surface layer of Clostridium difficile. Journal of Biological Chemistry 284: 34666-34673.
    • (2009) Journal of Biological Chemistry , vol.284 , pp. 34666-34673
    • Kirby, J.M.1    Ahern, H.2    Roberts, A.K.3    Kumar, V.4    Freeman, Z.5
  • 22
    • 79959365481 scopus 로고    scopus 로고
    • Roles of cysteine proteases Cwp84 and Cwp13 in biogenesis of the cell wall of Clostridium difficile
    • de la Riva L, Willing SE, Tate EW, Fairweather NF, (2011) Roles of cysteine proteases Cwp84 and Cwp13 in biogenesis of the cell wall of Clostridium difficile. Journal of Bacteriology 193: 3276-3285.
    • (2011) Journal of Bacteriology , vol.193 , pp. 3276-3285
    • de la Riva, L.1    Willing, S.E.2    Tate, E.W.3    Fairweather, N.F.4
  • 23
    • 0024371873 scopus 로고
    • Comparison of media for screening of diarrheic stools for the recovery of Clostridium difficile
    • Iwen PC, Booth SJ, Woods GL, (1989) Comparison of media for screening of diarrheic stools for the recovery of Clostridium difficile. Journal of Clinical Microbiology 27: 2105-2106.
    • (1989) Journal of Clinical Microbiology , vol.27 , pp. 2105-2106
    • Iwen, P.C.1    Booth, S.J.2    Woods, G.L.3
  • 25
    • 0026546539 scopus 로고
    • Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:sugar phosphotransferase system
    • Saier MH Jr, Reizer J, (1992) Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate:sugar phosphotransferase system. Journal of Bacteriology 174: 1433-1438.
    • (1992) Journal of Bacteriology , vol.174 , pp. 1433-1438
    • Saier Jr., M.H.1    Reizer, J.2
  • 26
    • 33745550745 scopus 로고    scopus 로고
    • The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome
    • Sebaihia M, Wren BW, Mullany P, Fairweather NF, Minton NP, et al. (2006) The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. Nature Genetics 38: 779-786.
    • (2006) Nature Genetics , vol.38 , pp. 779-786
    • Sebaihia, M.1    Wren, B.W.2    Mullany, P.3    Fairweather, N.F.4    Minton, N.P.5
  • 27
    • 0029797221 scopus 로고    scopus 로고
    • Cloning, expression, and isolation of the mannitol transport protein from the thermophilic bacterium Bacillus stearothermophilus
    • Henstra SA, Tolner B, ten Hoeve Duurkens RH, Konings WN, Robillard GT, (1996) Cloning, expression, and isolation of the mannitol transport protein from the thermophilic bacterium Bacillus stearothermophilus. Journal of Bacteriology 178: 5586-5591.
    • (1996) Journal of Bacteriology , vol.178 , pp. 5586-5591
    • Henstra, S.A.1    Tolner, B.2    ten Hoeve Duurkens, R.H.3    Konings, W.N.4    Robillard, G.T.5
  • 28
    • 0036034078 scopus 로고    scopus 로고
    • A new mutation delivery system for genome-scale approaches in Bacillus subtilis
    • Fabret C, Ehrlich SD, Noirot P, (2002) A new mutation delivery system for genome-scale approaches in Bacillus subtilis. Molecular Microbiology 46: 25-36.
    • (2002) Molecular Microbiology , vol.46 , pp. 25-36
    • Fabret, C.1    Ehrlich, S.D.2    Noirot, P.3
  • 29
    • 0023853960 scopus 로고
    • Characterization of aromatic- and purine-dependent Salmonella typhimurium: attention, persistence, and ability to induce protective immunity in BALB/c mice
    • O'Callaghan D, Maskell D, Liew FY, Easmon CS, Dougan G, (1988) Characterization of aromatic- and purine-dependent Salmonella typhimurium: attention, persistence, and ability to induce protective immunity in BALB/c mice. Infection and Immunity 56: 419-423.
    • (1988) Infection and Immunity , vol.56 , pp. 419-423
    • O'Callaghan, D.1    Maskell, D.2    Liew, F.Y.3    Easmon, C.S.4    Dougan, G.5
  • 30
    • 0024041593 scopus 로고
    • Molecular Koch's Postulates Applied to Microbial Pathogenicity
    • Falkow S, (1988) Molecular Koch's Postulates Applied to Microbial Pathogenicity. Reviews Infectious Disease 10 Suppl 2: S274-S276.
    • (1988) Reviews Infectious Disease , vol.10 , Issue.SUPPL.
    • Falkow, S.1
  • 31
    • 70350376366 scopus 로고    scopus 로고
    • A novel genetic switch controls phase variable expression of CwpV, a Clostridium difficile cell wall protein
    • Emerson JE, Reynolds CB, Fagan RP, Shaw HA, Goulding D, et al. (2009) A novel genetic switch controls phase variable expression of CwpV, a Clostridium difficile cell wall protein. Molecular Microbiology 74 (3) (): 541-56.
    • (2009) Molecular Microbiology , vol.74 , Issue.3 , pp. 541-556
    • Emerson, J.E.1    Reynolds, C.B.2    Fagan, R.P.3    Shaw, H.A.4    Goulding, D.5
  • 32
    • 77953940736 scopus 로고    scopus 로고
    • The VirSR two-component signal transduction system regulates NetB toxin production in Clostridium perfringens
    • Cheung JK, Keyburn AL, Carter GP, Lanckriet AL, Van Immerseel F, et al. (2010) The VirSR two-component signal transduction system regulates NetB toxin production in Clostridium perfringens. Infection and Immunity 78 (7) (): 3064-72.
    • (2010) Infection and Immunity , vol.78 , Issue.7 , pp. 3064-3072
    • Cheung, J.K.1    Keyburn, A.L.2    Carter, G.P.3    Lanckriet, A.L.4    Van Immerseel, F.5
  • 34
    • 80855136607 scopus 로고    scopus 로고
    • Mutagenic analysis of the Clostridium difficile flagellar proteins, FliC and FliD, and their contribution to virulence in hamsters
    • Dingle TC, Mulvey GL, Armstrong GD, (2011) Mutagenic analysis of the Clostridium difficile flagellar proteins, FliC and FliD, and their contribution to virulence in hamsters. Infection and Immunity 79 (10) (): 4061-7.
    • (2011) Infection and Immunity , vol.79 , Issue.10 , pp. 4061-4067
    • Dingle, T.C.1    Mulvey, G.L.2    Armstrong, G.D.3
  • 35
    • 79959430549 scopus 로고    scopus 로고
    • The Agr-Like Quorum-Sensing System Regulates Sporulation and Production of Enterotoxin and Beta2 Toxin by Clostridium perfringens Type A Non-Food-Borne Human Gastrointestinal Disease Strain F560
    • Li J, Chen J, Vidal JE, McClane BA, (2011) The Agr-Like Quorum-Sensing System Regulates Sporulation and Production of Enterotoxin and Beta2 Toxin by Clostridium perfringens Type A Non-Food-Borne Human Gastrointestinal Disease Strain F560. Infection and Immunity 79 (6) (): 2451-2459.
    • (2011) Infection and Immunity , vol.79 , Issue.6 , pp. 2451-2459
    • Li, J.1    Chen, J.2    Vidal, J.E.3    McClane, B.A.4
  • 36
    • 0015469558 scopus 로고
    • Preparation and properties of clostridial ferredoxins
    • Rabinowitz JC, (1972) Preparation and properties of clostridial ferredoxins. Methods in Enzymology 24: 431-446.
    • (1972) Methods in Enzymology , vol.24 , pp. 431-446
    • Rabinowitz, J.C.1
  • 38
    • 33750480202 scopus 로고    scopus 로고
    • Repeated cycles of Clostridium-directed enzyme prodrug therapy result in sustained antitumour effects in vivo
    • Theys J, Pennington O, Dubois L, Anlezark G, Vaughan T, et al. (2006) Repeated cycles of Clostridium-directed enzyme prodrug therapy result in sustained antitumour effects in vivo. British Journal of Cancer 95 (9) (): 1212-1219.
    • (2006) British Journal of Cancer , vol.95 , Issue.9 , pp. 1212-1219
    • Theys, J.1    Pennington, O.2    Dubois, L.3    Anlezark, G.4    Vaughan, T.5
  • 39
    • 0025290597 scopus 로고
    • Conjugative plasmid transfer from Escherichia coli to Clostridium acetobutylicum
    • Williams DR, Young DI, Young M, (1990) Conjugative plasmid transfer from Escherichia coli to Clostridium acetobutylicum. Journal of General Microbiology 136: 819-826.
    • (1990) Journal of General Microbiology , vol.136 , pp. 819-826
    • Williams, D.R.1    Young, D.I.2    Young, M.3
  • 40
    • 15544377092 scopus 로고    scopus 로고
    • Generation of an erythromycin-sensitive derivative of Clostridium difficile strain 630 (630Δerm) and demonstration that the conjugative transposon Tn916ΔE enters the genome of this strain at multiple sites
    • Hussain HA, Roberts AP, Mullany P, (2005) Generation of an erythromycin-sensitive derivative of Clostridium difficile strain 630 (630Δerm) and demonstration that the conjugative transposon Tn916ΔE enters the genome of this strain at multiple sites. Journal of Medical Microbiology 54: 137-41.
    • (2005) Journal of Medical Microbiology , vol.54 , pp. 137-141
    • Hussain, H.A.1    Roberts, A.P.2    Mullany, P.3
  • 42
    • 0036430107 scopus 로고    scopus 로고
    • Conjugative transfer of clostridial shuttle vectors from Escherichia coli to Clostridium difficile through circumvention of the restriction barrier
    • Purdy D, O'Keeffe TA, Elmore M, Herbert M, McLeod A, et al. (2002) Conjugative transfer of clostridial shuttle vectors from Escherichia coli to Clostridium difficile through circumvention of the restriction barrier. Molecular Microbiology 46: 439-52.
    • (2002) Molecular Microbiology , vol.46 , pp. 439-452
    • Purdy, D.1    O'Keeffe, T.A.2    Elmore, M.3    Herbert, M.4    McLeod, A.5
  • 44
    • 0034971793 scopus 로고    scopus 로고
    • Molecular characterization of the surface layer proteins from Clostridium difficile
    • Calabi E, Ward S, Wren B, Paxton T, Panico M, et al. (2001) Molecular characterization of the surface layer proteins from Clostridium difficile. Molecular Microbiology 40 (5) (): 1187-99.
    • (2001) Molecular Microbiology , vol.40 , Issue.5 , pp. 1187-1199
    • Calabi, E.1    Ward, S.2    Wren, B.3    Paxton, T.4    Panico, M.5
  • 45
    • 35048837277 scopus 로고    scopus 로고
    • Cwp84, a surface-associated protein of Clostridium difficile, is a cysteine protease with degrading activity on extracellular matrix proteins
    • Janoir C, Péchiné S, Grosdidier C, Collignon A, (2007) Cwp84, a surface-associated protein of Clostridium difficile, is a cysteine protease with degrading activity on extracellular matrix proteins. Journal of Bacteriology 189 (20) (): 7174-80.
    • (2007) Journal of Bacteriology , vol.189 , Issue.20 , pp. 7174-7180
    • Janoir, C.1    Péchiné, S.2    Grosdidier, C.3    Collignon, A.4


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