메뉴 건너뛰기




Volumn 9, Issue 8, 2014, Pages

HrrF is the Fur-regulated small RNA in nontypeable Haemophilus influenzae

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIAL RNA; CHAPERONE; DEOXYRIBONUCLEOTIDE; HRRF RNA; IRON; MOLYBDIC ACID; PROTEIN HFQ; TRANSCRIPTOME; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; FERRIC UPTAKE REGULATING PROTEINS, BACTERIAL; REPRESSOR PROTEIN;

EID: 84929279894     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0105644     Document Type: Article
Times cited : (16)

References (71)
  • 2
    • 31144471322 scopus 로고    scopus 로고
    • Bacterial stress responses: What doesn't kill them can make them stronger
    • Boor KJ (2006) Bacterial stress responses: What doesn't kill them can make them stronger. PLoS Biol 4: e23.
    • (2006) PLoS Biol , vol.4
    • Boor, K.J.1
  • 3
    • 35848954992 scopus 로고    scopus 로고
    • SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria
    • DOI 10.1146/annurev.micro.61.080706.093445
    • Hecker M, Pane-Farre J, Volker U (2007) SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria. Annu Rev Microbiol 61: 215-236. (Pubitemid 350058207)
    • (2007) Annual Review of Microbiology , vol.61 , pp. 215-236
    • Hecker, M.1    Pane-Farre, J.2    Volker, U.3
  • 4
    • 0036198628 scopus 로고    scopus 로고
    • Recent insights into the general stress response regulatory network in Escherichia coli
    • Hengge-Aronis R (2002) Recent insights into the general stress response regulatory network in Escherichia coli. J Mol Microbiol Biotechnol 4: 341-346.
    • (2002) J Mol Microbiol Biotechnol , vol.4 , pp. 341-346
    • Hengge-Aronis, R.1
  • 5
    • 84892658301 scopus 로고    scopus 로고
    • sigmaS, a major player in the response to environmental stresses in Escherichia coli: Role, regulation and mechanisms of promoter recognition
    • Landini P, Egli T, Wolf J, Lacour S (2014) sigmaS, a major player in the response to environmental stresses in Escherichia coli: role, regulation and mechanisms of promoter recognition. Environ Microbiol Rep 6: 1-13.
    • (2014) Environ Microbiol Rep , vol.6 , pp. 1-13
    • Landini, P.1    Egli, T.2    Wolf, J.3    Lacour, S.4
  • 6
    • 36549004138 scopus 로고    scopus 로고
    • Stress responses of bacteria
    • DOI 10.1016/j.sbi.2007.08.004, PII S0959440X0700111X, Catalysis and Regulation /Protein
    • Marles-Wright J, Lewis RJ (2007) Stress responses of bacteria. Curr Opin Struct Biol 17: 755-760. (Pubitemid 350180403)
    • (2007) Current Opinion in Structural Biology , vol.17 , Issue.6 , pp. 755-760
    • Marles-Wright, J.1    Lewis, R.J.2
  • 7
    • 15744389448 scopus 로고    scopus 로고
    • Sensing external stress: Watchdogs of the Escherichia coli cell envelope
    • DOI 10.1016/j.mib.2005.02.013, Cell Regulation
    • Ruiz N, Silhavy TJ (2005) Sensing external stress: watchdogs of the Escherichia coli cell envelope. Curr Opin Microbiol 8: 122-126. (Pubitemid 40417951)
    • (2005) Current Opinion in Microbiology , vol.8 , Issue.2 , pp. 122-126
    • Ruiz, N.1    Silhavy, T.J.2
  • 8
    • 0023664923 scopus 로고
    • Ferric uptake regulation protein acts as a repressor, employing iron (II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli
    • Bagg A, Neilands JB (1987) Ferric uptake regulation protein acts as a repressor, employing iron (II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli. Biochemistry 26: 5471-5477.
    • (1987) Biochemistry , vol.26 , pp. 5471-5477
    • Bagg, A.1    Neilands, J.B.2
  • 9
    • 0035069457 scopus 로고    scopus 로고
    • Iron and metal regulation in bacteria
    • Hantke K (2001) Iron and metal regulation in bacteria. Curr Opin Microbiol 4: 172-177.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 172-177
    • Hantke, K.1
  • 10
    • 3042816068 scopus 로고    scopus 로고
    • Fur functions as an activator and as a repressor of putative virulence genes in Neisseria meningitidis
    • DOI 10.1111/j.1365-2958.2004.04030.x
    • Delany I, Rappuoli R, Scarlato V (2004) Fur functions as an activator and as a repressor of putative virulence genes in Neisseria meningitidis. Mol Microbiol 52: 1081-1090. (Pubitemid 38916175)
    • (2004) Molecular Microbiology , vol.52 , Issue.4 , pp. 1081-1090
    • Delany, I.1    Rappuoli, R.2    Scarlato, V.3
  • 11
    • 34247092927 scopus 로고    scopus 로고
    • Small RNAs controlling iron metabolism
    • DOI 10.1016/j.mib.2007.03.013, PII S1369527407000306, Cell Regulation (RNA Special Issue)
    • Masse E, Salvail H, Desnoyers G, Arguin M (2007) Small RNAs controlling iron metabolism. Curr Opin Microbiol 10: 140-145. (Pubitemid 46590053)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.2 , pp. 140-145
    • Masse, E.1    Salvail, H.2    Desnoyers, G.3    Arguin, M.4
  • 12
    • 84879565885 scopus 로고    scopus 로고
    • Iron-responsive bacterial small RNAs: Variations on a theme
    • Oglesby-Sherrouse AG, Murphy ER (2013) Iron-responsive bacterial small RNAs: variations on a theme. Metallomics 5: 276-286.
    • (2013) Metallomics , vol.5 , pp. 276-286
    • Oglesby-Sherrouse, A.G.1    Murphy, E.R.2
  • 14
    • 26444505976 scopus 로고    scopus 로고
    • Effect of RyhB small RNA on global iron use in Escherichia coli
    • DOI 10.1128/JB.187.20.6962-6971.2005
    • Masse E, Vanderpool CK, Gottesman S (2005) Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol 187: 6962-6971. (Pubitemid 41428872)
    • (2005) Journal of Bacteriology , vol.187 , Issue.20 , pp. 6962-6971
    • Masse, E.1    Vanderpool, C.K.2    Gottesman, S.3
  • 15
    • 34249777280 scopus 로고    scopus 로고
    • The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis
    • DOI 10.1111/j.1365-2958.2007.05733.x
    • Prévost K, Salvail H, Desnoyers G, Jacques J-F, Phaneuf E, et al. (2007) The small RNA RyhB activates the translation of shiA mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. Mol Microbiol 64: 1260-1273. (Pubitemid 46849016)
    • (2007) Molecular Microbiology , vol.64 , Issue.5 , pp. 1260-1273
    • Prevost, K.1    Salvail, H.2    Desnoyers, G.3    Jacques, J.-F.4    Phaneuf, E.5    Masse, E.6
  • 16
    • 0141860088 scopus 로고    scopus 로고
    • Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli
    • DOI 10.1101/gad.1127103
    • Masse E, Escorcia FE, Gottesman S (2003) Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes Dev 17: 2374-2383. (Pubitemid 37214786)
    • (2003) Genes and Development , vol.17 , Issue.19 , pp. 2374-2383
    • Masse, E.1    Escorcia, F.E.2    Gottesman, S.3
  • 17
    • 28244485425 scopus 로고    scopus 로고
    • Fur regulates acid resistance in Shigella flexneri via RyhB and ydeP
    • DOI 10.1111/j.1365-2958.2005.04920.x
    • Oglesby AG, Murphy ER, Iyer VR, Payne SM (2005) Fur regulates acid resistance in Shigella flexneri via RyhB and ydeP. Mol Microbiol 58: 1354-1367. (Pubitemid 41705414)
    • (2005) Molecular Microbiology , vol.58 , Issue.5 , pp. 1354-1367
    • Oglesby, A.G.1    Murphy, E.R.2    Iyer, V.R.3    Payne, S.M.4
  • 18
    • 34447254589 scopus 로고    scopus 로고
    • RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence
    • DOI 10.1128/IAI.00112-07
    • Murphy ER, Payne SM (2007) RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence. Infect Immun 75: 3470-3477. (Pubitemid 47040948)
    • (2007) Infection and Immunity , vol.75 , Issue.7 , pp. 3470-3477
    • Murphy, E.R.1    Payne, S.M.2
  • 20
    • 38749084963 scopus 로고    scopus 로고
    • Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD
    • DOI 10.1128/JB.00926-07
    • Ellermeier JR, Slauch JM (2008) Fur regulates expression of the Salmonella pathogenicity island 1 type III secretion system through HilD. J Bacteriol 190: 476-486. (Pubitemid 351360063)
    • (2008) Journal of Bacteriology , vol.190 , Issue.2 , pp. 476-486
    • Ellermeier, J.R.1    Slauch, J.M.2
  • 21
    • 84865597155 scopus 로고    scopus 로고
    • Two sRNA RyhB homologs from Yersinia pestis biovar microtus expressed in vivo have differential Hfq-dependent stability
    • Deng Z, Meng X, Su S, Liu Z, Ji X, et al. (2012) Two sRNA RyhB homologs from Yersinia pestis biovar microtus expressed in vivo have differential Hfq-dependent stability. Res Microbiol 163: 413-418.
    • (2012) Res Microbiol , vol.163 , pp. 413-418
    • Deng, Z.1    Meng, X.2    Su, S.3    Liu, Z.4    Ji, X.5
  • 22
    • 84865270041 scopus 로고    scopus 로고
    • Role of the small RNA RyhB in the Fur regulon in mediating the capsular polysaccharide biosynthesis and iron acquisition systems in Klebsiella pneumonia
    • Huang S-H, Wang C-K, Peng H-L, Wu C-C, Chen Y-T, et al. (2012) Role of the small RNA RyhB in the Fur regulon in mediating the capsular polysaccharide biosynthesis and iron acquisition systems in Klebsiella pneumonia. BMC Microbiol 12.
    • (2012) BMC Microbiol , vol.12
    • Huang, S.-H.1    Wang, C.-K.2    Peng, H.-L.3    Wu, C.-C.4    Chen, Y.-T.5
  • 23
    • 60649096656 scopus 로고    scopus 로고
    • Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae
    • Ducey TF, Jackson L, Orvis J, Dyer DW (2009) Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae. Microb Pathog 46: 166-170.
    • (2009) Microb Pathog , vol.46 , pp. 166-170
    • Ducey, T.F.1    Jackson, L.2    Orvis, J.3    Dyer, D.W.4
  • 24
    • 34248359838 scopus 로고    scopus 로고
    • A novel fur- and iron-regulated small RNA, NrrF, is required for indirect fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis
    • DOI 10.1128/JB.01890-06
    • Mellin JR, Goswami S, Grogan S, Tjaden B, Genco CA (2007) A novel Fur- and iron-regulated small RNA, NrrF, is required for indirect Fur-mediated regulation of the sdhA and sdhC genes in Neisseria meningitidis. J Bacteriol 189: 3686-3694. (Pubitemid 46740165)
    • (2007) Journal of Bacteriology , vol.189 , Issue.10 , pp. 3686-3694
    • Mellin, J.R.1    Goswami, S.2    Grogan, S.3    Tjaden, B.4    Genco, C.A.5
  • 25
    • 56949102349 scopus 로고    scopus 로고
    • Small RNA ArrF regulates the expression of sodB and feSII genes in Azotobacter vinelandii
    • DOI 10.1007/s00284-008-9248-z
    • Jung Y-S, Kwon Y-M (2008) Small RNA ArrF regulates the expression of sodB and feSII genes in Azotobacter vinelandii. Curr Microbiol 57: 593-597. (Pubitemid 50289283)
    • (2008) Current Microbiology , vol.57 , Issue.6 , pp. 593-597
    • Jung, Y.-S.1    Kwon, Y.-M.2
  • 27
    • 20444473805 scopus 로고    scopus 로고
    • Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae
    • DOI 10.1128/JB.187.12.4005-4014.2005
    • Davis BM, Quinones M, Pratt J, Ding Y, Waldor MK (2005) Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae. J Bacteriol 187: 4005-4014. (Pubitemid 40827784)
    • (2005) Journal of Bacteriology , vol.187 , Issue.12 , pp. 4005-4014
    • Davis, B.M.1    Quinones, M.2    Pratt, J.3    Ding, Y.4    Waldor, M.K.5
  • 28
    • 23944509113 scopus 로고    scopus 로고
    • Characterization of Vibrio cholerae RyhB: The RyhB regulon and role of ryhB in biofilm formation
    • DOI 10.1128/IAI.73.9.5706-5719.2005
    • Mey AR, Craig SA, Payne SM (2005) Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation. Infect Immun 73: 5706-5719. (Pubitemid 41193006)
    • (2005) Infection and Immunity , vol.73 , Issue.9 , pp. 5706-5719
    • Mey, A.R.1    Craig, S.A.2    Payne, S.M.3
  • 29
    • 0037767125 scopus 로고    scopus 로고
    • Nontypeable Haemophilus influenzae gene expression induced in vivo in a chinchilla model of otitis media
    • DOI 10.1128/IAI.71.6.3454-3462.2003
    • Mason KM, Munson Jr RS, Bakaletz LO (2003) Nontypeable Haemophilus influenzae gene expression induced in vivo in a chinchilla model of otitis media. Infect Immun 71: 3454-3462. (Pubitemid 36637574)
    • (2003) Infection and Immunity , vol.71 , Issue.6 , pp. 3454-3462
    • Mason, K.M.1    Munson Jr., R.S.2    Bakaletz, L.O.3
  • 31
    • 33750707543 scopus 로고    scopus 로고
    • The non-typeable Haemophilus influenzae Sap transporter provides a mechanism of antimicrobial peptide resistance and SapD-dependent potassium acquisition
    • DOI 10.1111/j.1365-2958.2006.05460.x
    • Mason KM, Bruggeman ME, Munson Jr RS, Bakaletz LO (2006) The nontypeable Haemophilus influenzae Sap transporter provides a mechanism of antimicrobial peptide resistance and SapD-dependent potassium acquisition. Mol Microbiol 62: 1357-1372. (Pubitemid 44707199)
    • (2006) Molecular Microbiology , vol.62 , Issue.5 , pp. 1357-1372
    • Mason, K.M.1    Bruggeman, M.E.2    Munson, R.S.3    Bakaletz, L.O.4
  • 32
    • 11144297947 scopus 로고    scopus 로고
    • A mutation in the sap operon attenuates survival of nontypeable Haemophilus influenzae in a chinchilla model of otitis media
    • Mason K, Munson Jr RS, Bakaletz LO (2005) A mutation in the sap operon attenuates survival of nontypeable Haemophilus influenzae in a chinchilla model of otitis media. Infect Immun 73: 599.
    • (2005) Infect Immun , vol.73 , pp. 599
    • Mason, K.1    Munson Jr., R.S.2    Bakaletz, L.O.3
  • 33
    • 0027519573 scopus 로고
    • Expression of the Haemophilus influenzae transferrin receptor is repressible by hemin but not elemental iron alone
    • Morton DJ, Musser JM, Stull TL (1993) Expression of the Haemophilus influenzae transferrin receptor is repressible by hemin but not elemental iron alone. Infect Immun 61: 4033-4037. (Pubitemid 23298550)
    • (1993) Infection and Immunity , vol.61 , Issue.10 , pp. 4033-4037
    • Morton, D.J.1    Musser, J.M.2    Stull, T.L.3
  • 35
    • 0023873443 scopus 로고
    • Frequency of fimbriation of nontypable Haemophilus influenzae and its ability to adhere to chinchilla and human respiratory epithelium
    • Bakaletz LO, Tallan BM, Hoepf T, DeMaria TF, Birck HG, et al. (1988) Frequency of fimbriation of nontypable Haemophilus influenzae and its ability to adhere to chinchilla and human respiratory epithelium. Infect Immun 56: 331-335. (Pubitemid 18040493)
    • (1988) Infection and Immunity , vol.56 , Issue.2 , pp. 331-335
    • Bakaletz, L.O.1    Tallan, B.M.2    Hoepf, T.3    DeMaria, T.F.4    Birck, H.G.5    Lim, D.J.6
  • 36
    • 0031170799 scopus 로고    scopus 로고
    • Relative immunogenicity and efficacy of two synthetic chimeric peptides of fimbrin as vaccinogens against nasopharyngeal colonization by nontypeable Haemophilus influenzae in the chinchilla
    • DOI 10.1016/S0264-410X(96)00298-8, PII S0264410X96002988
    • Bakaletz LO, Leake ER, Billy JM, Kaumaya PT (1997) Relative immunogenicity and efficacy of two synthetic chimeric peptides of fimbrin as vaccinogens against nasopharyngeal colonization by nontypeable Haemophilus influenzae in the chinchilla. Vaccine 15: 955-961. (Pubitemid 27308570)
    • (1997) Vaccine , vol.15 , Issue.9 , pp. 955-961
    • Bakaletz, L.O.1    Leake, E.R.2    Billy, J.M.3    Kaumaya, P.T.P.4
  • 37
    • 84861213715 scopus 로고    scopus 로고
    • Biological roles of nontypeable Haemophilus influenzae type IV pilus proteins encoded by the pil and com operons
    • Carruthers MD, Tracy EN, Dickson AC, Ganser KB, Munson Jr RS, et al. (2012) Biological roles of nontypeable Haemophilus influenzae type IV pilus proteins encoded by the pil and com operons. J Bacteriol 194: 1927-1933.
    • (2012) J Bacteriol , vol.194 , pp. 1927-1933
    • Carruthers, M.D.1    Tracy, E.N.2    Dickson, A.C.3    Ganser, K.B.4    Munson Jr., R.S.5
  • 39
    • 0041919182 scopus 로고    scopus 로고
    • Chemically defined media for growth of Haemophilus influenzae strains
    • DOI 10.1128/JCM.41.9.4408-4410.2003
    • Coleman HN, Daines DA, Jarisch J, Smith AL (2003) Chemically defined media for growth of Haemophilus influenzae strains. J Clin Microbiol 41: 4408-4410. (Pubitemid 37099716)
    • (2003) Journal of Clinical Microbiology , vol.41 , Issue.9 , pp. 4408-4410
    • Coleman, H.N.1    Daines, D.A.2    Jarisch, J.3    Smith, A.L.4
  • 40
    • 0030999548 scopus 로고    scopus 로고
    • Elemental iron does repress transferrin, haemopexin and haemoglobin receptor expression in Haemophilus influenzae
    • DOI 10.1016/S0378-1097(97)00089-X, PII S037810979700089X
    • Hasan AA, Holland J, Smith A, Williams P (1997) Elemental iron does repress transferrin, haemopexin and haemoglobin receptor expression in Haemophilus influenzae. FEMS Microbiol Lett 150: 19-26. (Pubitemid 27234407)
    • (1997) FEMS Microbiology Letters , vol.150 , Issue.1 , pp. 19-26
    • Hasan, A.A.1    Holland, J.2    Smith, A.3    Williams, P.4
  • 41
    • 0035308590 scopus 로고    scopus 로고
    • A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA
    • DOI 10.1006/geno.2000.6451
    • Lee EC, Yu D, Martinez de Velasco J, Tessarollo L, Swing DA, et al. (2001) A highly efficient Escherichia coli -based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA. Genomics 73: 56-65. (Pubitemid 32382387)
    • (2001) Genomics , vol.73 , Issue.1 , pp. 56-65
    • Lee, E.-C.1    Yu, D.2    Martinez, D.V.J.3    Tessarollo, L.4    Swing, D.A.5    Court, D.L.6    Jenkins, N.A.7    Copeland, N.G.8
  • 42
    • 58349103721 scopus 로고    scopus 로고
    • Construction of non-polar mutants in Haemophilus influenzae using FLP recombinase technology
    • Tracy E, Ye F, Baker BD, Munson Jr RS (2008) Construction of non-polar mutants in Haemophilus influenzae using FLP recombinase technology. BMC Mol Biol 9: 101.
    • (2008) BMC Mol Biol , vol.9 , pp. 101
    • Tracy, E.1    Ye, F.2    Baker, B.D.3    Munson Jr., R.S.4
  • 43
    • 0037209167 scopus 로고    scopus 로고
    • Transformation of Haemophilus influenzae
    • Poje G, Redfield RJ (2003) Transformation of Haemophilus influenzae. Methods Mol Med 71: 57-70.
    • (2003) Methods Mol Med , vol.71 , pp. 57-70
    • Poje, G.1    Redfield, R.J.2
  • 44
    • 84875509174 scopus 로고    scopus 로고
    • Ferric uptake regulator and its role in the pathogenesis of nontypeable Haemophilus influenzae
    • Harrison A, Santana EA, Szelestey BR, Newsom DE, White P, et al. (2013) Ferric uptake regulator and its role in the pathogenesis of nontypeable Haemophilus influenzae. Infect Immun 81: 1221-1233.
    • (2013) Infect Immun , vol.81 , pp. 1221-1233
    • Harrison, A.1    Santana, E.A.2    Szelestey, B.R.3    Newsom, D.E.4    White, P.5
  • 45
    • 70449841242 scopus 로고    scopus 로고
    • Example of use of TaqMan real-time RT-PCR to analyze bacterial gene transcript levels: Haemophilus influenzae
    • Chapter 1: Unit 1D.1
    • Johnston JW (2009) Example of use of TaqMan real-time RT-PCR to analyze bacterial gene transcript levels: Haemophilus influenzae. Curr Protoc Microbiol Chapter 1: Unit 1D.1.
    • (2009) Curr Protoc Microbiol
    • Johnston, J.W.1
  • 46
    • 84874312025 scopus 로고    scopus 로고
    • NGSUtils: A software suite for analyzing and manipulating next-generation sequencing datasets
    • Breese MR, Liu Y (2013) NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets. Bioinformatics 29: 494-496.
    • (2013) Bioinformatics , vol.29 , pp. 494-496
    • Breese, M.R.1    Liu, Y.2
  • 47
    • 84921425131 scopus 로고    scopus 로고
    • edgeR for Differential RNA-seq and ChIP-seq Analysis: An Application to Stem Cell Biology
    • Nikolayeva O, Robinson MD (2014) edgeR for Differential RNA-seq and ChIP-seq Analysis: An Application to Stem Cell Biology. Methods Mol Biol 1150: 45-79.
    • (2014) Methods Mol Biol , vol.1150 , pp. 45-79
    • Nikolayeva, O.1    Robinson, M.D.2
  • 48
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE (2002) Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210. (Pubitemid 34679544)
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 49
    • 0027968079 scopus 로고
    • An analysis of the complete nucleotide sequence of the Haemophilus ducreyi broad-host range plasmid pLS88
    • Dixon LG, Albritton WL, Willson PJ (1994) An analysis of the complete nucleotide sequence of the Haemophilus ducreyi broad-host range plasmid pLS88. Plasmid 32: 228-232.
    • (1994) Plasmid , vol.32 , pp. 228-232
    • Dixon, L.G.1    Albritton, W.L.2    Willson, P.J.3
  • 51
    • 0034199476 scopus 로고    scopus 로고
    • The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences
    • Stothard P (2000) The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28: 1102-1104.
    • (2000) Biotechniques , vol.28 , pp. 1102-1104
    • Stothard, P.1
  • 52
    • 27944453600 scopus 로고    scopus 로고
    • Virtual Footprint and PRODORIC: An integrative framework for regulon prediction in prokaryotes
    • DOI 10.1093/bioinformatics/bti635
    • Münch R, Hiller K, Grote A, Scheer M, Klein J, et al. (2005) Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics 21: 4187-4189. (Pubitemid 41672111)
    • (2005) Bioinformatics , vol.21 , Issue.22 , pp. 4187-4189
    • Munch, R.1    Hiller, K.2    Grote, A.3    Scheer, M.4    Klein, J.5    Schobert, M.6    Jahn, D.7
  • 53
    • 0023684064 scopus 로고
    • A general method of in vitro preparation and specific mutagenesis of DNA fragments: Study of protein and DNA interactions
    • Higuchi R, Krummel B, Saiki RK (1988) A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. Nucleic Acids Res 16: 7351-7367.
    • (1988) Nucleic Acids Res , vol.16 , pp. 7351-7367
    • Higuchi, R.1    Krummel, B.2    Saiki, R.K.3
  • 54
    • 80052526246 scopus 로고    scopus 로고
    • Genome-wide detection of novel regulatory RNAs in E. coli
    • Raghavan R, Groisman EA, Ochman H (2011) Genome-wide detection of novel regulatory RNAs in E. coli. Genome Res 21: 1487-1497.
    • (2011) Genome Res , vol.21 , pp. 1487-1497
    • Raghavan, R.1    Groisman, E.A.2    Ochman, H.3
  • 56
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14: 178-192.
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 57
    • 84890135354 scopus 로고    scopus 로고
    • Identification and characterization of novel Helicobacter pylori apo-Fur-regulated target genes
    • Carpenter BM, Gilbreath JJ, Pich OQ, McKelvey AM, Maynard EL, et al. (2013) Identification and characterization of novel Helicobacter pylori apo-Fur-regulated target genes. J Bacteriol 195.
    • (2013) J Bacteriol , vol.195
    • Carpenter, B.M.1    Gilbreath, J.J.2    Pich, O.Q.3    McKelvey, A.M.4    Maynard, E.L.5
  • 58
    • 84875457350 scopus 로고    scopus 로고
    • Bacterial small RNA-based negative regulation: Hfq and its accomplices
    • De Lay N, Schu DJ, Gottesman S (2013) Bacterial small RNA-based negative regulation: Hfq and its accomplices. J Biol Chem 288: 7996-8003.
    • (2013) J Biol Chem , vol.288 , pp. 7996-8003
    • De Lay, N.1    Schu, D.J.2    Gottesman, S.3
  • 59
    • 84879005493 scopus 로고    scopus 로고
    • Structure and RNA-binding properties of the bacterial LSm protein Hfq
    • Sauer E (2013) Structure and RNA-binding properties of the bacterial LSm protein Hfq. RNA Biol 10: 610-618.
    • (2013) RNA Biol , vol.10 , pp. 610-618
    • Sauer, E.1
  • 60
    • 84866147799 scopus 로고    scopus 로고
    • Novel iron-regulated and Fur-regulated small regulatory RNAs in Aggregatibacter actinomycetemcomitans
    • Amarasinghe JJ, Connell TD, Scannapieco FA, Haase EM (2012) Novel iron-regulated and Fur-regulated small regulatory RNAs in Aggregatibacter actinomycetemcomitans. Mol Oral Microbiol 27: 327-349.
    • (2012) Mol Oral Microbiol , vol.27 , pp. 327-349
    • Amarasinghe, J.J.1    Connell, T.D.2    Scannapieco, F.A.3    Haase, E.M.4
  • 61
    • 0034441193 scopus 로고    scopus 로고
    • Nucleotide sequence analysis of hypervariable junctions of Haemophilus influenzae pilus gene clusters
    • DOI 10.1128/IAI.68.12.6896-6902.2000
    • Read TD, Satola SW, Farley MM (2000) Nucledotide sequence analysis of hypervariable junctions of Haemophilus influenzae pilus gene clustes. Infect Immun 68: 6896-6902. (Pubitemid 32463400)
    • (2000) Infection and Immunity , vol.68 , Issue.12 , pp. 6896-6902
    • Read, T.D.1    Satola, S.W.2    Farley, M.M.3
  • 62
    • 0031033181 scopus 로고    scopus 로고
    • Conserved extragenic DNA elements in Haemophilus influenzae [1]
    • Read TD, Farley MM (1997) Conserved extragenic DNA elements in Haemophilus influenzae. Mol Microbiol 23: 627-628. (Pubitemid 27051391)
    • (1997) Molecular Microbiology , vol.23 , Issue.3 , pp. 627-628
    • Read, T.D.1    Farley, M.M.2
  • 63
    • 79954425124 scopus 로고    scopus 로고
    • Making DNA without iron - Induction of a manganese-dependent ribonucleotide reductase in response to iron starvation
    • Andrews SC (2011) Making DNA without iron - induction of a manganese-dependent ribonucleotide reductase in response to iron starvation. Mol Microbiol 80: 286-289.
    • (2011) Mol Microbiol , vol.80 , pp. 286-289
    • Andrews, S.C.1
  • 64
    • 79953850801 scopus 로고    scopus 로고
    • The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation
    • Martin JE, Imlay JA (2011) The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation. Mol Microbiol 80: 319-334.
    • (2011) Mol Microbiol , vol.80 , pp. 319-334
    • Martin, J.E.1    Imlay, J.A.2
  • 65
    • 0022342556 scopus 로고
    • AsnC: An autogenously regulated activator of asparagine synthetase A transcription in Echerichia coli
    • Kolling R, Lother H (1985) AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Echerichia coli. J Bacteriol 164.
    • (1985) J Bacteriol , vol.164
    • Kolling, R.1    Lother, H.2
  • 66
    • 0018908432 scopus 로고
    • Genetic and biomedical studies demonstrating a second gene coding for asparagine synthetase in Escherichia coli
    • Humbert R, Simoni RD (1980) Genetic and biomedical studies demonstrating a second gene coding for asparagine synthetase in Escherichia coli. J Bacteriol 142.
    • (1980) J Bacteriol , vol.142
    • Humbert, R.1    Simoni, R.D.2
  • 67
    • 57249083988 scopus 로고    scopus 로고
    • IntaRNA: Efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
    • Busch A, Richter AS, Backofen R (2008) IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions. Bioinformatics 24: 2849-2856.
    • (2008) Bioinformatics , vol.24 , pp. 2849-2856
    • Busch, A.1    Richter, A.S.2    Backofen, R.3
  • 68
    • 33750443276 scopus 로고    scopus 로고
    • RyhB small RNA modulates the free intracellular iron pool and is essential for normal growth during iron limitation in Escherichia coli
    • DOI 10.1111/j.1365-2958.2006.05439.x
    • Jacques JF, Jang S, Prevost K, Desnoyers G, Desmarais M, et al. (2006) RyhB small RNA modulates the free intracellular iron pool and is essential for normal growth during iron limitation in Escherichia coli. Mol Microbiol 62: 1181-1190. (Pubitemid 44655327)
    • (2006) Molecular Microbiology , vol.62 , Issue.4 , pp. 1181-1190
    • Jacques, J.-F.1    Jang, S.2    Prevost, K.3    Desnoyers, G.4    Desmarais, M.5    Imlay, J.6    Masse, E.7
  • 69
    • 68949107281 scopus 로고    scopus 로고
    • Molybdenum cofactors, enzymes and pathways
    • Schwarz G, Mendel RR, Ribbe MW (2009) Molybdenum cofactors, enzymes and pathways. Nature 460: 839-847.
    • (2009) Nature , vol.460 , pp. 839-847
    • Schwarz, G.1    Mendel, R.R.2    Ribbe, M.W.3
  • 70
    • 77955369857 scopus 로고    scopus 로고
    • Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis
    • Mellin JR, McClure R, Lopez D, Green O, Reinhard B, et al. (2010) Role of Hfq in iron-dependent and -independent gene regulation in Neisseria meningitidis. Microbiology 156: 2316-2326.
    • (2010) Microbiology , vol.156 , pp. 2316-2326
    • Mellin, J.R.1    McClure, R.2    Lopez, D.3    Green, O.4    Reinhard, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.