Two sRNA RyhB homologs from Yersinia pestis biovar microtus expressed in vivo have differential Hfq-dependent stability

Research in Microbiology

Volumn 163, Issue 6-7, 2012, Pages 413-418

  Deng, Zhongliang ^a,b,c   Meng, Xiangrong ^b,d   Su, Shanchun ^b,e   Liu, Zizhong ^b   Ji, Xiaolan ^b,d   Zhang, Yiquan ^b   Zhao, Xiangna ^b   Wang, Xiaoyi ^b   Yang, Ruifu ^a,b   Han, Yanping ^b  

^a SOUTHERN MEDICAL UNIVERSITY   (China)

^b BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^c UNIVERSITY OF SOUTH CHINA   (China)

^d JIANGSU UNIVERSITY   (China)

^e SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Hfq dependent stability; RyhB; Yersinia pestis

Indexed keywords

FERRIC UPTAKE REGULATOR; MESSENGER RNA; RNA BINDING PROTEIN; RNA BINDING PROTEIN HFQ; SMALL UNTRANSLATED RNA; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BACTERIAL GENE; BACTERIAL PNEUMONIA; BACTERIAL VIRULENCE; BACTERIUM MUTANT; BIOTYPE; FEMALE; GENE EXPRESSION REGULATION; HALF LIFE TIME; HOMEOSTASIS; IRON METABOLISM; LIFE CYCLE; MOUSE; NONHUMAN; NORTHERN BLOTTING; PATHOGENESIS; PLAGUE; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA STABILITY; RYHB1 GENE; RYHB2 GENE; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION; YERSINIA PESTIS;

ANIMALS; DISEASE MODELS, ANIMAL; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; HOST FACTOR 1 PROTEIN; LUNG; MICE; PLAGUE; RNA STABILITY; RNA, SMALL UNTRANSLATED; VIRULENCE; YERSINIA PESTIS;

ESCHERICHIA COLI; MICROTUS; MUS; YERSINIA PESTIS;

EID: 84865597155     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2012.05.006     Document Type: Article

References (28)

1. Alice A.F., Naka H., Crosa J.H. Global gene expression as a function of the iron status of the bacterial cell: influence of differentially expressed genes in the virulence of the human pathogen Vibrio vulnificus. Infect. Immun. 2008, 76:4019-4037.
2. Beckmann B.M., Grunweller A., Weber M.H., Hartmann R.K. Northern blot detection of endogenous small RNAs (approximately14 nt) in bacterial total RNA extracts. Nucleic Acids Res. 2010, 38:e147.
3. Benjamin J.A., Desnoyers G., Morissette A., Salvail H., Masse E. Dealing with oxidative stress and iron starvation in microorganisms: an overview. Can. J. Physiol. Pharmacol. 2010, 88:264-272.
4. Bollinger C.J., Kallio P.T. Impact of the small RNA RyhB on growth, physiology and heterologous protein expression in Escherichia coli. FEMS. Microbiol. Lett. 2007, 275:221-228.
5. Boughammoura A., Matzanke B.F., Bottger L., Reverchon S., Lesuisse E., Expert D., Franza T. Differential role of ferritins in iron metabolism and virulence of the plant-pathogenic bacterium Erwinia chrysanthemi 3937. J. Bacteriol. 2008, 190:1518-1530.
6. Davis B.M., Quinones M., Pratt J., Ding Y., Waldor M.K. Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae. J. Bacteriol. 2005, 187:4005-4014.
7. Gao H., Zhou D., Li Y., Guo Z., Han Y., Song Y., Zhai J., Du Z., Wang X., Lu J., Yang R. The iron-responsive Fur regulon in Yersinia pestis. J. Bacteriol. 2008, 190:3063-3075.
8. Geissmann T.A., Touati D. Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator. EMBO. J. 2004, 23:396-405.
9. Geng J., Song Y., Yang L., Feng Y., Qiu Y., Li G., Guo J., Bi Y., Qu Y., Wang W., Wang X., Guo Z., Yang R., Han Y. Involvement of the post-transcriptional regulator Hfq in Yersinia pestis virulence. PLoS. One 2009, 4:e6213.
10. Guillemet M.L., Moreau P.L. Fur-dependent detoxification of organic acids by rpoS mutants during prolonged incubation under aerobic, phosphate starvation conditions. J. Bacteriol. 2008, 190:5567-5575.
11. Koo J.T., Alleyne T.M., Schiano C.A., Jafari N., Lathem W.W. Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence. Proc. Natl. Acad. Sci. USA 2011, 108:E709-E717.
12. Masse E., Escorcia F.E., Gottesman S. Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli. Genes. Dev. 2003, 17:2374-2383.
13. Masse E., Gottesman S. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl. Acad. Sci. USA 2002, 99:4620-4625.
14. Masse E., Majdalani N., Gottesman S. Regulatory roles for small RNAs in bacteria. Curr. Opin. Microbiol. 2003, 6:120-124.
15. Masse E., Salvail H., Desnoyers G., Arguin M. Small RNAs controlling iron metabolism. Curr. Opin. Microbiol. 2007, 10:140-145.
16. Masse E., Vanderpool C.K., Gottesman S. Effect of RyhB small RNA on global iron use in Escherichia coli. J. Bacteriol. 2005, 187:6962-6971.
17. Mey A.R., Craig S.A., Payne S.M. Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of ryhB in biofilm formation. Infect. Immun. 2005, 73:5706-5719.
18. Moll I., Afonyushkin T., Vytvytska O., Kaberdin V.R., Blasi U. Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA 2003, 9:1308-1314.
19. Moller T., Franch T., Hojrup P., Keene D.R., Bachinger H.P., Brennan R.G., Valentin-Hansen P. Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol. Cell. 2002, 9:23-30.
20. Murphy E.R., Payne S.M. RyhB, an iron-responsive small RNA molecule, regulates Shigella dysenteriae virulence. Infect. Immun. 2007, 75:3470-3477.
21. Oglesby A.G., Murphy E.R., Iyer V.R., Payne S.M. Fur regulates acid resistance in Shigella flexneri via RyhB and ydeP. Mol. Microbiol. 2005, 58:1354-1367.
22. Otaka H., Ishikawa H., Morita T., Aiba H. PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action. Proc. Natl. Acad. Sci. USA 2011, 108:13059-13064.
23. Padalon-Brauch G., Hershberg R., Elgrably-Weiss M., Baruch K., Rosenshine I., Margalit H., Altuvia S. Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res. 2008, 36:1913-1927.
24. Perry R.D., Fetherston J.D. Yersinia pestis-etiologic agent of plague. Clin. Microbiol. Rev. 1997, 10:35-66.
25. Storz G., Opdyke J.A., Zhang A. Controlling mRNA stability and translation with small, noncoding RNAs. Curr. Opin. Microbiol. 2004, 7:140-144.
26. 2+ in Yersinia pestis include structural genes for outer membrane proteins. Infect. Immun. 1986, 51:445-454.
27. Toledo-Arana A., Repoila F., Cossart P. Small noncoding RNAs controlling pathogenesis. Curr. Opin. Microbiol. 2007, 10:182-188.
28. Zhou D., Tong Z., Song Y., Han Y., Pei D., Pang X., Zhai J., Li M., Cui B., Qi Z., Jin L., Dai R., Du Z., Wang J., Guo Z., Huang P., Yang R. Genetics of metabolic variations between Yersinia pestis biovars and the proposal of a new biovar, microtus. J. Bacteriol. 2004, 186:5147-5152.