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Volumn 6, Issue 10, 2014, Pages 2968-2982

Faster-X effects in two drosophila lineages

Author keywords

Drosophila melanogaster; Drosophila pseudoobscura; Faster X effect; Positive selection; Sex biased gene expression

Indexed keywords

ANIMAL; CHROMOSOME; DROSOPHILA; DROSOPHILA MELANOGASTER; GENETIC SELECTION; GENETICS;

EID: 84929103273     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu229     Document Type: Article
Times cited : (25)

References (89)
  • 1
    • 0035107550 scopus 로고    scopus 로고
    • Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans
    • Andolfatto P. 2001. Contrasting patterns of X-linked and autosomal nucleotide variation in Drosophila melanogaster and Drosophila simulans. Mol Biol Evol. 18:279-290.
    • (2001) Mol Biol Evol. , vol.18 , pp. 279-290
    • Andolfatto, P.1
  • 2
    • 38849194141 scopus 로고    scopus 로고
    • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    • Andolfatto P. 2007. Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome. Genome Res. 17:1755-1762.
    • (2007) Genome Res. , vol.17 , pp. 1755-1762
    • Andolfatto, P.1
  • 3
    • 0001866374 scopus 로고
    • Selection, recombination, and DNA polymorphism in Drosophila
    • editor. Non-neutral evolution. New York: Springer
    • Aquadro CF, Begun DJ, Kindahl EC. 1994. Selection, recombination, and DNA polymorphism in Drosophila. In: Brian Golding, editor. Non-neutral evolution. New York: Springer. p. 46-56.
    • (1994) Brian Golding , pp. 46-56
    • Aquadro, C.F.1    Begun, D.J.2    Kindahl, E.C.3
  • 5
    • 84872519386 scopus 로고    scopus 로고
    • Sex-biased transcriptome evolution in Drosophila
    • Assis R, Zhou Q, Bachtrog D. 2012. Sex-biased transcriptome evolution in Drosophila. Genome Biol Evol. 4:1189-1200.
    • (2012) Genome Biol Evol. , vol.4 , pp. 1189-1200
    • Assis, R.1    Zhou, Q.2    Bachtrog, D.3
  • 6
    • 65949109041 scopus 로고    scopus 로고
    • Accelerated adaptive evolution on a newly formed X chromosome
    • Bachtrog D, Jensen JD, Zhang Z. 2009. Accelerated adaptive evolution on a newly formed X chromosome. PLoS Biol. 7:e82.
    • (2009) PLoS Biol. , vol.7 , pp. e82
    • Bachtrog, D.1    Jensen, J.D.2    Zhang, Z.3
  • 7
    • 84985956297 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B Stat Methodol. 57:289-300.
    • (1995) J R Stat Soc Series B Stat Methodol. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 8
    • 11244324004 scopus 로고    scopus 로고
    • A pseudohitchhiking model of X vs. Autosomal diversity
    • Betancourt AJ, Kim Y, Orr HA. 2004. A pseudohitchhiking model of X vs. Autosomal diversity. Genetics 168:2261-2269.
    • (2004) Genetics , vol.168 , pp. 2261-2269
    • Betancourt, A.J.1    Kim, Y.2    Orr, H.A.3
  • 9
    • 0346991738 scopus 로고    scopus 로고
    • The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: Implications for the correlation between the synonymous substitution rate and codon usage bias
    • Bierne N, Eyre-Walker A. 2003. The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution rates: implications for the correlation between the synonymous substitution rate and codon usage bias. Genetics 165:1587-1597.
    • (2003) Genetics , vol.165 , pp. 1587-1597
    • Bierne, N.1    Eyre-Walker, A.2
  • 11
    • 84863193733 scopus 로고    scopus 로고
    • Molecular evolution in nonrecombining regions of the Drosophila melanogaster genome
    • Campos JL, Charlesworth B, Haddrill PR. 2012. Molecular evolution in nonrecombining regions of the Drosophila melanogaster genome. Genome Biol Evol. 4:278-288.
    • (2012) Genome Biol Evol. , vol.4 , pp. 278-288
    • Campos, J.L.1    Charlesworth, B.2    Haddrill, P.R.3
  • 12
    • 84897900382 scopus 로고    scopus 로고
    • The relation between recombination rate and patterns of molecular evolution and variation in Drosophila melanogaster
    • Campos JL, Halligan DL, Haddrill PR, Charlesworth B. 2014. The relation between recombination rate and patterns of molecular evolution and variation in Drosophila melanogaster. Mol Biol Evol. 31:1010-1028.
    • (2014) Mol Biol Evol. , vol.31 , pp. 1010-1028
    • Campos, J.L.1    Halligan, D.L.2    Haddrill, P.R.3    Charlesworth, B.4
  • 13
    • 84874372928 scopus 로고    scopus 로고
    • Codon usage bias and effective population sizes on the X chromosome versus the autosomes in Drosophila melanogaster
    • Campos JL, Zeng K, Parker DJ, Charlesworth B, Haddrill PR. 2013. Codon usage bias and effective population sizes on the X chromosome versus the autosomes in Drosophila melanogaster. Mol Biol Evol. 30: 811-823.
    • (2013) Mol Biol Evol. , vol.30 , pp. 811-823
    • Campos, J.L.1    Zeng, K.2    Parker, D.J.3    Charlesworth, B.4    Haddrill, P.R.5
  • 14
    • 84860583402 scopus 로고    scopus 로고
    • The role of background selection in shaping patterns ofmolecular evolution and variation: Evidence fromvariability on the Drosophila X chromosome
    • Charlesworth B. 2012. The role of background selection in shaping patterns ofmolecular evolution and variation: evidence fromvariability on the Drosophila X chromosome. Genetics 191:233-246.
    • (2012) Genetics , vol.191 , pp. 233-246
    • Charlesworth, B.1
  • 15
    • 29244433195 scopus 로고    scopus 로고
    • Estimating the incidence of ancestral polymorphisms
    • Charlesworth B, Bartolomé C, Noël V. 2005. Estimating the incidence of ancestral polymorphisms. Genet Res. 86:149-157.
    • (2005) Genet Res. , vol.86 , pp. 149-157
    • Charlesworth, B.1    Bartolomé, C.2    Noël, V.3
  • 17
    • 0023501735 scopus 로고
    • The relative rates of evolution of sex chromosomes and autosomes
    • Charlesworth B, Coyne JA, Barton NH. 1987. The relative rates of evolution of sex chromosomes and autosomes. Am Nat. 130:113-146.
    • (1987) Am Nat. , vol.130 , pp. 113-146
    • Charlesworth, B.1    Coyne, J.A.2    Barton, N.H.3
  • 18
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG, et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450:203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1
  • 19
    • 0029563023 scopus 로고
    • Amethod for estimating the numbers of synonymous and nonsynonymous substitutions per site
    • Comeron JM. 1995. Amethod for estimating the numbers of synonymous and nonsynonymous substitutions per site. JMol Evol. 41:1152-1159.
    • (1995) JMol Evol. , vol.41 , pp. 1152-1159
    • Comeron, J.M.1
  • 20
    • 0032894285 scopus 로고    scopus 로고
    • Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
    • Comeron JM, Kreitman M, Aguade M. 1999. Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. Genetics 151:239-249.
    • (1999) Genetics , vol.151 , pp. 239-249
    • Comeron, J.M.1    Kreitman, M.2    Aguade, M.3
  • 21
    • 35848944443 scopus 로고    scopus 로고
    • Adaptive protein evolution of X-linked and autosomal genes in Drosophila: Implications for faster-X hypotheses
    • Connallon T. 2007. Adaptive protein evolution of X-linked and autosomal genes in Drosophila: implications for faster-X hypotheses. Mol Biol Evol. 24:2566-2572.
    • (2007) Mol Biol Evol. , vol.24 , pp. 2566-2572
    • Connallon, T.1
  • 22
    • 79958295857 scopus 로고    scopus 로고
    • Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila
    • Connallon T, Clark AG. 2011. Association between sex-biased gene expression and mutations with sex-specific phenotypic consequences in Drosophila. Genome Biol Evol. 3:151-155.
    • (2011) Genome Biol Evol. , vol.3 , pp. 151-155
    • Connallon, T.1    Clark, A.G.2
  • 23
    • 84864655409 scopus 로고    scopus 로고
    • Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution
    • Connallon T, Singh ND, Clark AG. 2012. Impact of genetic architecture on the relative rates of X versus autosomal adaptive substitution. Mol Biol Evol. 29:1933-1942.
    • (2012) Mol Biol Evol. , vol.29 , pp. 1933-1942
    • Connallon, T.1    Singh, N.D.2    Clark, A.G.3
  • 24
    • 1842527889 scopus 로고    scopus 로고
    • Using comparative genomic data to test for fast-X evolution
    • Counterman BA, Noor MA. 2004. Using comparative genomic data to test for fast-X evolution. Evolution 58:565-660.
    • (2004) Evolution , vol.58 , pp. 565-660
    • Counterman, B.A.1    Noor, M.A.2
  • 26
    • 58149234978 scopus 로고    scopus 로고
    • Genomic evidence for a large-Z effect
    • Ellegren H. 2009. Genomic evidence for a large-Z effect. Proc Biol Sci. 276: 361-366.
    • (2009) Proc Biol Sci. , vol.276 , pp. 361-366
    • Ellegren, H.1
  • 27
    • 68949202924 scopus 로고    scopus 로고
    • Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change
    • Eyre-Walker A, Keightley PD. 2009. Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change. Mol Biol Evol. 26:2097-2108.
    • (2009) Mol Biol Evol. , vol.26 , pp. 2097-2108
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 28
    • 0037186608 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    • Fay JC, Wyckoff GJ, Wu CI. 2002. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 415: 1024-1026.
    • (2002) Nature , vol.415 , pp. 1024-1026
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 30
    • 33749859791 scopus 로고    scopus 로고
    • Sebida: A database for the functional and evolutionary analysis of geneswith sex-biased expression
    • Gnad F, Parsch J. 2006. Sebida: a database for the functional and evolutionary analysis of geneswith sex-biased expression. Bioinformatics 22: 2577-2579.
    • (2006) Bioinformatics , vol.22 , pp. 2577-2579
    • Gnad, F.1    Parsch, J.2
  • 31
    • 77954969511 scopus 로고    scopus 로고
    • Genome wide analyses reveal little evidence for adaptive evolution in many plant species
    • Gossmann TI, et al. 2010. Genome wide analyses reveal little evidence for adaptive evolution in many plant species. Mol Biol Evol. 27: 1822-1832.
    • (2010) Mol Biol Evol. , vol.27 , pp. 1822-1832
    • Gossmann, T.I.1
  • 32
    • 84863185415 scopus 로고    scopus 로고
    • Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution
    • Grath S, Parsch J. 2012. Rate of amino acid substitution is influenced by the degree and conservation of male-biased transcription over 50 myr of Drosophila evolution. Genome Biol Evol. 4:346-359.
    • (2012) Genome Biol Evol. , vol.4 , pp. 346-359
    • Grath, S.1    Parsch, J.2
  • 33
    • 78751612067 scopus 로고    scopus 로고
    • Estimating the parameters of selection on nonsynonymous mutations in Drosophila pseudoobscura and D. Miranda
    • Haddrill PR, Loewe L, Charlesworth B. 2010. Estimating the parameters of selection on nonsynonymous mutations in Drosophila pseudoobscura and D. miranda. Genetics 185:1381-1396.
    • (2010) Genetics , vol.185 , pp. 1381-1396
    • Haddrill, P.R.1    Loewe, L.2    Charlesworth, B.3
  • 34
    • 79955426758 scopus 로고    scopus 로고
    • Determinants of synonymous and nonsynonymous variability in three species of Drosophila
    • Haddrill PR, Zeng K, Charlesworth B. 2011. Determinants of synonymous and nonsynonymous variability in three species of Drosophila.Mol Biol Evol. 28:1731-1743.
    • (2011) Mol Biol Evol. , vol.28 , pp. 1731-1743
    • Haddrill, P.R.1    Zeng, K.2    Charlesworth, B.3
  • 35
    • 0002341847 scopus 로고
    • A mathematical theory of natural and artificial selection
    • Haldane JBS. 1924. A mathematical theory of natural and artificial selection. Trans Camb Philos Soc. 23:19-41.
    • (1924) Trans Camb Philos Soc. , vol.23 , pp. 19-41
    • Haldane, J.B.S.1
  • 36
    • 3142714474 scopus 로고    scopus 로고
    • Multilocusmethods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. Persimilis
    • Hey J, Nielsen R. 2004. Multilocusmethods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 37
    • 84871958299 scopus 로고    scopus 로고
    • A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
    • Hu TT, Eisen MB, Thornton KR, Andolfatto P. 2013. A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res. 23: 89-98.
    • (2013) Genome Res. , vol.23 , pp. 89-98
    • Hu, T.T.1    Eisen, M.B.2    Thornton, K.R.3    Andolfatto, P.4
  • 38
    • 77958489006 scopus 로고    scopus 로고
    • Characterizing recurrent positive selection at fast-evolving genes in Drosophila miranda and Drosophila pseudoobscura
    • Jensen JD, Bachtrog D. 2010. Characterizing recurrent positive selection at fast-evolving genes in Drosophila miranda and Drosophila pseudoobscura. Genome Biol Evol. 2:371-378.
    • (2010) Genome Biol Evol. , vol.2 , pp. 371-378
    • Jensen, J.D.1    Bachtrog, D.2
  • 39
    • 72449139061 scopus 로고    scopus 로고
    • Evolution of sex-dependent gene expression in three recently diverged species of Drosophila
    • Jiang ZF, Machado CA. 2009. Evolution of sex-dependent gene expression in three recently diverged species of Drosophila. Genetics 183: 1175-1185.
    • (2009) Genetics , vol.183 , pp. 1175-1185
    • Jiang, Z.F.1    Machado, C.A.2
  • 40
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772-780.
    • (2013) Mol Biol Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 41
    • 84872013472 scopus 로고    scopus 로고
    • Anexcess of gene expression divergence on the X chromosome in Drosophila embryos: Implications for the faster-X hypothesis
    • KayseriliMA,Gerrard DT, Tomancak P,Kalinka AT. 2012.Anexcess of gene expression divergence on the X chromosome in Drosophila embryos: implications for the faster-X hypothesis. PLoS Genet. 8:e1003200.
    • (2012) PLoS Genet. , vol.8 , pp. e1003200
    • Kayserilimagerrard, D.T.1    Tomancak Pkalinka, A.T.2
  • 42
    • 22144447840 scopus 로고    scopus 로고
    • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
    • Khaitovich P, et al. 2005. Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 309:1850-1854.
    • (2005) Science , vol.309 , pp. 1850-1854
    • Khaitovich, P.1
  • 43
    • 1642399822 scopus 로고    scopus 로고
    • Male-biased mutation, sex linkage, and the rate of adaptive evolution
    • Kirkpatrick M, Hall DW. 2004. Male-biased mutation, sex linkage, and the rate of adaptive evolution. Evolution 58:437-440.
    • (2004) Evolution , vol.58 , pp. 437-440
    • Kirkpatrick, M.1    Hall, D.W.2
  • 44
    • 79251557454 scopus 로고    scopus 로고
    • PoPoolation: A toolbox for population genetic analysis of next generation sequencing data from pooled individuals
    • Kofler R, et al. 2011. PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. PLoS One 6:e15925.
    • (2011) PLoS One , vol.6 , pp. e15925
    • Kofler, R.1
  • 45
    • 84901369030 scopus 로고    scopus 로고
    • Faster-X adaptive protein evolution in house mice
    • Kousathanas A, Halligan DL, Keightley PD. 2014. Faster-X adaptive protein evolution in house mice. Genetics 196:1131-1143.
    • (2014) Genetics , vol.196 , pp. 1131-1143
    • Kousathanas, A.1    Halligan, D.L.2    Keightley, P.D.3
  • 46
    • 84866081815 scopus 로고    scopus 로고
    • Genomic variation in natural populations of Drosophila melanogaster
    • Langley CH, et al. 2012. Genomic variation in natural populations of Drosophila melanogaster. Genetics 192:533-598.
    • (2012) Genetics , vol.192 , pp. 533-598
    • Langley, C.H.1
  • 47
    • 0024210911 scopus 로고
    • On the role of unequal exchange in the containment of transposable element copy number
    • Langley CH, Montgomery E, Hudson R, Kaplan N, Charlesworth B. 1988. On the role of unequal exchange in the containment of transposable element copy number. Genet Res. 52:223-235.
    • (1988) Genet Res. , vol.52 , pp. 223-235
    • Langley, C.H.1    Montgomery, E.2    Hudson, R.3    Kaplan, N.4    Charlesworth, B.5
  • 48
    • 34249074723 scopus 로고    scopus 로고
    • Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. Persimilis
    • Machado CA, Haselkorn TS, Noor MA. 2007. Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis. Genetics 175:1289-1306.
    • (2007) Genetics , vol.175 , pp. 1289-1306
    • Machado, C.A.1    Haselkorn, T.S.2    Noor, M.A.3
  • 49
    • 84863012360 scopus 로고    scopus 로고
    • The Drosophila melanogaster genetic reference panel
    • Mackay TF, et al. 2012. The Drosophila melanogaster genetic reference panel. Nature 482:173-178.
    • (2012) Nature , vol.482 , pp. 173-178
    • Mackay, T.F.1
  • 50
    • 79957912429 scopus 로고    scopus 로고
    • Experimental mutation-accumulation on the X chromosome of Drosophila melanogaster reveals stronger selection on males than females
    • Mallet MA, Bouchard JM, Kimber CM, Chippindale AK. 2011. Experimental mutation-accumulation on the X chromosome of Drosophila melanogaster reveals stronger selection on males than females. BMC Evol Biol. 11:156.
    • (2011) BMC Evol Biol. , vol.11 , pp. 156
    • Mallet, M.A.1    Bouchard, J.M.2    Kimber, C.M.3    Chippindale, A.K.4
  • 51
    • 34248137504 scopus 로고    scopus 로고
    • Fast-X on the Z: Rapid evolution of sex-linked genes in birds
    • Mank JE, Axelsson E, Ellegren H. 2007. Fast-X on the Z: rapid evolution of sex-linked genes in birds. Genome Res. 17:618-624.
    • (2007) Genome Res. , vol.17 , pp. 618-624
    • Mank, J.E.1    Axelsson, E.2    Ellegren, H.3
  • 52
    • 77249176571 scopus 로고    scopus 로고
    • Faster-Z evolution is predominantly due to genetic drift
    • Mank JE, Nam K, Ellegren H. 2010. Faster-Z evolution is predominantly due to genetic drift. Mol Biol Evol. 27:661-670.
    • (2010) Mol Biol Evol. , vol.27 , pp. 661-670
    • Mank, J.E.1    Nam, K.2    Ellegren, H.3
  • 53
    • 77249165844 scopus 로고    scopus 로고
    • Effective population size and the faster-X effect: Empirical results and their interpretation
    • Mank JE, Vicoso B, Berlin S, Charlesworth B. 2010. Effective population size and the faster-X effect: empirical results and their interpretation. Evolution 64:663-674.
    • (2010) Evolution , vol.64 , pp. 663-674
    • Mank, J.E.1    Vicoso, B.2    Berlin, S.3    Charlesworth, B.4
  • 54
    • 0001068043 scopus 로고
    • Evolution in sexual and asexual populations
    • Maynard Smith J. 1968. Evolution in sexual and asexual populations. Am Nat 102:469-473.
    • (1968) Am Nat , vol.102 , pp. 469-473
    • Maynard Smith, J.1
  • 55
    • 84870266437 scopus 로고    scopus 로고
    • Recombinationmodulates how selection affects linked sites in Drosophila
    • McGaugh SE, et al. 2012. Recombinationmodulates how selection affects linked sites in Drosophila. PLoS Biol. 10:e1001422.
    • (2012) PLoS Biol. , vol.10 , pp. e1001422
    • McGaugh, S.E.1
  • 56
    • 84255177710 scopus 로고    scopus 로고
    • Genomic impacts of chromosomal inversions in parapatric Drosophila species
    • McGaugh SE, Noor MAF. 2012. Genomic impacts of chromosomal inversions in parapatric Drosophila species. Philos Trans R Soc Lond B Biol Sci. 367:422-429.
    • (2012) Philos Trans R Soc Lond B Biol Sci. , vol.367 , pp. 422-429
    • McGaugh, S.E.1    Noor, M.A.F.2
  • 57
    • 84873576857 scopus 로고    scopus 로고
    • Little evidence for demasculinization of the Drosophila X chromosome among genes expressed in the male germline
    • Meiklejohn CD, Presgraves DC. 2012. Little evidence for demasculinization of the Drosophila X chromosome among genes expressed in the male germline. Genome Biol Evol. 4:1007-1016.
    • (2012) Genome Biol Evol. , vol.4 , pp. 1007-1016
    • Meiklejohn, C.D.1    Presgraves, D.C.2
  • 58
    • 79957479702 scopus 로고    scopus 로고
    • Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution
    • Meisel RP. 2011. Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution. Mol Biol Evol. 28:1893-1900.
    • (2011) Mol Biol Evol. , vol.28 , pp. 1893-1900
    • Meisel, R.P.1
  • 59
    • 84882667670 scopus 로고    scopus 로고
    • The faster-X effect: Integrating theory and data
    • Meisel RP, Connallon T. 2013. The faster-X effect: integrating theory and data. Trends Genet. 29:537-544.
    • (2013) Trends Genet. , vol.29 , pp. 537-544
    • Meisel, R.P.1    Connallon, T.2
  • 60
    • 84868101450 scopus 로고    scopus 로고
    • Faster-X evolution of gene expression in Drosophila
    • Meisel RP, Malone JH, Clark AG. 2012a. Faster-X evolution of gene expression in Drosophila. PLoS Genet. 8:e1003013.
    • (2012) PLoS Genet. , vol.8 , pp. e1003013
    • Meisel, R.P.1    Malone, J.H.2    Clark, A.G.3
  • 61
    • 84863550891 scopus 로고    scopus 로고
    • Disentangling the relationship between sex-biased gene expression and X-linkage
    • Meisel RP, Malone JH, Clark AG. 2012b. Disentangling the relationship between sex-biased gene expression and X-linkage. Genome Res. 22: 1255-1265.
    • (2012) Genome Res. , vol.22 , pp. 1255-1265
    • Meisel, R.P.1    Malone, J.H.2    Clark, A.G.3
  • 62
    • 0002084648 scopus 로고
    • Bearing of the Drosophila work on systematics
    • Julian Huxley, editor, Oxford (United Kingdom): Oxford University Press
    • Muller HJ. 1940. Bearing of the Drosophila work on systematics. In: Julian Huxley, editor. The new systematics, Oxford (United Kingdom): Oxford University Press. p. 185-268.
    • (1940) The New Systematics , pp. 185-268
    • Muller, H.J.1
  • 63
    • 37249004679 scopus 로고    scopus 로고
    • Divergence between the Drosophila pseudoobscura and D. Persimilis genome sequences in relation to chromosomal inversions
    • Noor MA, Garfield DA, Schaeffer SW, Machado CA. 2007. Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions. Genetics 177: 1417-1428.
    • (2007) Genetics , vol.177 , pp. 1417-1428
    • Noor, M.A.1    Garfield, D.A.2    Schaeffer, S.W.3    Machado, C.A.4
  • 64
    • 0034512322 scopus 로고    scopus 로고
    • Gene flow between Drosophila pseudoobscura and D. Persimilis
    • discussion 2176-2177
    • Noor MA, Johnson NA, Hey J. 2000. Gene flow between Drosophila pseudoobscura and D. persimilis. Evolution 54:2174-2175; discussion 2176-2177.
    • (2000) Evolution , vol.54 , pp. 2174-2175
    • Noor, M.A.1    Johnson, N.A.2    Hey, J.3
  • 65
    • 0342657165 scopus 로고    scopus 로고
    • The rate of adaptation in asexuals
    • Orr HA. 2000. The rate of adaptation in asexuals. Genetics 155:961-968.
    • (2000) Genetics , vol.155 , pp. 961-968
    • Orr, H.A.1
  • 66
    • 0035109378 scopus 로고    scopus 로고
    • Haldane's sieve and adaptation from the standing genetic variation
    • Orr HA, Betancourt AJ. 2001. Haldane's sieve and adaptation from the standing genetic variation. Genetics 157:875-884.
    • (2001) Genetics , vol.157 , pp. 875-884
    • Orr, H.A.1    Betancourt, A.J.2
  • 67
    • 84896504155 scopus 로고    scopus 로고
    • The life cycle of Drosophila orphan genes
    • Palmieri N, Kosiol C, Schlötterer C. 2014. The life cycle of Drosophila orphan genes. eLife 3:e01311.
    • (2014) ELife , vol.3 , pp. e01311
    • Palmieri, N.1    Kosiol, C.2    Schlötterer, C.3
  • 68
    • 84899564793 scopus 로고    scopus 로고
    • The ontogeny and evolution of sexbiased gene expression in Drosophila melanogaster
    • Perry JC, Harrison PW, Mank JE. 2014. The ontogeny and evolution of sexbiased gene expression in Drosophila melanogaster. Mol Biol Evol. 31: 1206-1219.
    • (2014) Mol Biol Evol. , vol.31 , pp. 1206-1219
    • Perry, J.C.1    Harrison, P.W.2    Mank, J.E.3
  • 69
    • 84872014607 scopus 로고    scopus 로고
    • Population genomics of sub-Saharan Drosophila melanogaster: African diversity and non-African admixture
    • Pool JE, et al. 2012. Population genomics of sub-Saharan Drosophila melanogaster: African diversity and non-African admixture. PLoS Genet. 8: e1003080.
    • (2012) PLoS Genet. , vol.8 , pp. e1003080
    • Pool, J.E.1
  • 70
    • 45449104603 scopus 로고    scopus 로고
    • Sex chromosomes and speciation in Drosophila
    • Presgraves DC. 2008. Sex chromosomes and speciation in Drosophila. Trends Genet. 24:336-343.
    • (2008) Trends Genet. , vol.24 , pp. 336-343
    • Presgraves, D.C.1
  • 71
    • 52049125422 scopus 로고    scopus 로고
    • Polytene chromosomal maps of 11 Drosophila species: The order of genomic scaffolds inferred from genetic and physical maps
    • Schaeffer SW, et al. 2008. Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics 179:1601-1655.
    • (2008) Genetics , vol.179 , pp. 1601-1655
    • Schaeffer, S.W.1
  • 73
    • 26444579454 scopus 로고    scopus 로고
    • X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis
    • Singh ND, Davis JC, Petrov DA. 2005. X-linked genes evolve higher codon bias in Drosophila and Caenorhabditis. Genetics 171:145-155.
    • (2005) Genetics , vol.171 , pp. 145-155
    • Singh, N.D.1    Davis, J.C.2    Petrov, D.A.3
  • 74
    • 38949208249 scopus 로고    scopus 로고
    • Contrasting the efficacy of selection on the X and autosomes in Drosophila
    • Singh ND, Larracuente AM, Clark AG. 2008. Contrasting the efficacy of selection on the X and autosomes in Drosophila. Mol Biol Evol. 25: 454-467.
    • (2008) Mol Biol Evol. , vol.25 , pp. 454-467
    • Singh, N.D.1    Larracuente, A.M.2    Clark, A.G.3
  • 75
    • 37549020695 scopus 로고    scopus 로고
    • Similar levels of X-linked and autosomal nucleotide variation in African and non-African populations of Drosophila melanogaster
    • Singh ND, Macpherson JM, Jensen JD, Petrov DA. 2007. Similar levels of X-linked and autosomal nucleotide variation in African and non-African populations of Drosophila melanogaster. BMC Evol Biol. 7:202.
    • (2007) BMC Evol Biol. , vol.7 , pp. 202
    • Singh, N.D.1    Macpherson, J.M.2    Jensen, J.D.3    Petrov, D.A.4
  • 76
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater GSC, Birney E. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6:31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Gsc, S.1    Birney, E.2
  • 78
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • Smith NG, Eyre-Walker A. 2002. Adaptive protein evolution in Drosophila. Nature 415:1022-1024.
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.1    Eyre-Walker, A.2
  • 79
    • 36049039511 scopus 로고    scopus 로고
    • Demasculinization of X chromosomes in the Drosophila genus
    • Sturgill D, Zhang Y, Parisi M, Oliver B. 2007. Demasculinization of X chromosomes in the Drosophila genus. Nature 450:238-241.
    • (2007) Nature , vol.450 , pp. 238-241
    • Sturgill, D.1    Zhang, Y.2    Parisi, M.3    Oliver, B.4
  • 81
    • 33645505597 scopus 로고    scopus 로고
    • X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution
    • Thornton K, Bachtrog D, Andolfatto P. 2006. X chromosomes and autosomes evolve at similar rates in Drosophila: no evidence for faster-X protein evolution. Genome Res. 16:498-504.
    • (2006) Genome Res. , vol.16 , pp. 498-504
    • Thornton, K.1    Bachtrog, D.2    Andolfatto, P.3
  • 82
    • 33645008028 scopus 로고    scopus 로고
    • Enhanced adaptive evolution of spermexpressed genes on the mammalian X chromosome
    • Torgerson DG, Singh RS. 2006. Enhanced adaptive evolution of spermexpressed genes on the mammalian X chromosome. Heredity (Edinb) 96:39-44.
    • (2006) Heredity (Edinb) , vol.96 , pp. 39-44
    • Torgerson, D.G.1    Singh, R.S.2
  • 83
    • 0030068317 scopus 로고    scopus 로고
    • Differences in crossover frequency and distribution among three sibling species of Drosophila
    • True JR, Mercer JM, Laurie CC. 1996. Differences in crossover frequency and distribution among three sibling species of Drosophila. Genetics 142:507-523.
    • (1996) Genetics , vol.142 , pp. 507-523
    • True, J.R.1    Mercer, J.M.2    Laurie, C.C.3
  • 84
    • 33746218184 scopus 로고    scopus 로고
    • Evolution on the X chromosome: Unusual patterns and processes
    • Vicoso B, Charlesworth B. 2006. Evolution on the X chromosome: unusual patterns and processes. Nat Rev Genet. 7:645-653.
    • (2006) Nat Rev Genet. , vol.7 , pp. 645-653
    • Vicoso, B.1    Charlesworth, B.2
  • 85
    • 69249173100 scopus 로고    scopus 로고
    • Effective population size and the faster-X effect: An extended model
    • Vicoso B, Charlesworth B. 2009. Effective population size and the faster-X effect: an extended model. Evolution 63:2413-2426.
    • (2009) Evolution , vol.63 , pp. 2413-2426
    • Vicoso, B.1    Charlesworth, B.2
  • 86
    • 57649134342 scopus 로고    scopus 로고
    • A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila
    • Vicoso B, Haddrill PR, Charlesworth B. 2008. A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila. Genet Res. 90:421-431.
    • (2008) Genet Res. , vol.90 , pp. 421-431
    • Vicoso, B.1    Haddrill, P.R.2    Charlesworth, B.3
  • 87
    • 33745352578 scopus 로고    scopus 로고
    • Estimating the genomewide rate of adaptive protein evolution in Drosophila
    • Welch JJ. 2006. Estimating the genomewide rate of adaptive protein evolution in Drosophila. Genetics 173:821-837.
    • (2006) Genetics , vol.173 , pp. 821-837
    • Welch, J.J.1
  • 88
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 89
    • 84858707057 scopus 로고    scopus 로고
    • Sex-specific adaptation drives early sex chromosome evolution in Drosophila
    • Zhou Q, Bachtrog D. 2012. Sex-specific adaptation drives early sex chromosome evolution in Drosophila. Science 337:341-345.
    • (2012) Science , vol.337 , pp. 341-345
    • Zhou, Q.1    Bachtrog, D.2


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