Evolution: Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees

Science

Volumn 309, Issue 5742, 2005, Pages 1850-1854

  Khaitovich, Philipp ^a   Hellmann, Ines ^a   Enard, Wolfgang ^a   Nowick, Katja ^a   Leinweber, Marcus ^a   Franz, Henriette ^a   Weiss, Gunter ^b   Lachmann, Michael ^a   Pääbo, Svante ^a  

^a MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

^b HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN; LIVING SYSTEMS STUDIES; PROTEINS; TISSUE;

CHIMPANZEES; GENOME SEQUENCE; NEUTRAL EVOLUTION;

GENES;

TRANSCRIPTOME; PROTEIN;

EVOLUTION; GENOME; PRIMATE;

ANIMAL TISSUE; ARTICLE; CHIMPANZEE; EVOLUTION; GENE EXPRESSION; GENE SEQUENCE; GENETIC VARIABILITY; GENOME; HUMAN; HUMAN GENOME; HUMAN TISSUE; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; X CHROMOSOME; ADULT; AGED; AMINO ACID SEQUENCE; ANIMAL; ANTIBODY SPECIFICITY; BIOLOGICAL MODEL; CHILD; CHROMOSOME; COMPARATIVE STUDY; DNA MICROARRAY; DNA SEQUENCE; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC SELECTION; GENETIC TRANSCRIPTION; GENETICS; HEART; KIDNEY; LIVER; MALE; MIDDLE AGED; NUCLEOTIDE SEQUENCE; PAN TROGLODYTES; PHYSIOLOGY; PREFRONTAL CORTEX; PROMOTER REGION; SPECIES DIFFERENCE; TESTIS;

ANIMALIA; PAN (APE); PAN TROGLODYTES;

ADULT; AGED; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHILD; CHROMOSOMES, HUMAN, X; CHROMOSOMES, MAMMALIAN; EVOLUTION, MOLECULAR; FEMALE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENOME; GENOME, HUMAN; HEART; HUMANS; KIDNEY; LIVER; MALE; MIDDLE AGED; MODELS, GENETIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORGAN SPECIFICITY; PAN TROGLODYTES; PREFRONTAL CORTEX; PROMOTER REGIONS (GENETICS); PROTEINS; SELECTION (GENETICS); SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TESTIS; TRANSCRIPTION, GENETIC; X CHROMOSOME;

EID: 22144447840     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1108296     Document Type: Article

References (39)

1. R. G. Klein, The Human Career (Univ. Chicago Press, Chicago, ed. 2, 1999).
2. M. Tomasello, J. Call, Primate Cognition (Oxford Univ. Press, Oxford, 1997).
3. E. J. Vallender, B. T. Lahn, Hum. Mol. Genet. 13 (Suppl. 2), R245 (2004).
4. A. G. Clark et al., Science 302, 1960 (2003).
5. W. Enard, S. Paabo, Annu. Rev. Genomics Hum. Genet. 5, 351 (2004).
6. The Chimpanzee Sequencing and Analysis Consortium, Nature 437, 69 (2005).
7. M. C. King, A. C. Wilson, Science 188, 107 (1975).
8. T. M. Preuss, M. Caceres, M. C. Oldham, D. H. Geschwind, Nat. Rev. Genet. 5, 850 (2004).
9. I. K. Jordan, L. Marino-Ramirez, Y. I. Wolf, E. V. Koonin, Mol. Biol. Evol. 21, 2058 (2004).
10. A. Wagner, Proc. Natl. Acad. Sci. U.S.A. 97, 6579 (2000).
11. Z. Gu, D. Nicolae, H. H. Lu, W. H. Li, Trends Genet 18, 609 (2002).
12. K. D. Makova, W. H. Li, Genome Res. 13, 1638 (2003).
13. S. V. Nuzhdin, M. L. Wayne, K. L. Harmon, L. M. McIntyre, Mol. Biol. Evol. 21, 1308 (2004).
14. B. Lemos, B. R. Bettencourt, C. D. Meiklejohn, D. L. Haiti, Mol. Biol. Evol. 22, 1345 (2005).
15. Materials and methods are available as supporting material on Science Online.
16. J. C. Fay, C. I. Wu, Annu. Rev. Genomics Hum. Genet. 4, 213 (2003).
17. L. Duret, D. Mouchiroud, Mol. Biol. Evol. 17, 68 (2000).
18. E. E. Winter, L. Goodstadt, C. P. Ponting, Genome Res. 14, 54 (2004).
19. L. Zhang, W. H. Li, Mol. Biol. Evol. 21, 236 (2004).
20. K. Kuma, N. Iwabe, T. Miyata, Mol. Biol. Evol. 12, 123 (1995).
21. H. B. Fraser, A. E. Hirsh, L. M. Steinmetz, C. Scharfe, M. W. Feldman, Science 296, 750 (2002).
22. B. Lemos, C. D. Meiklejohn, D. L. Haiti, Nat. Genet. 36, 1059 (2004).
23. P. Khaitovich et al., PLoS Biol. 2, 682 (2004).
24. M. Kimura, The Neutral Theory of Molecular Evolution (Cambridge Univ. Press, Cambridge, New York, 1983).
25. W. P. Hsieh, T. M. Chu, R. D. Wolfinger, G. Gibson, Genetics 165, 747 (2003).
26. S. A. Rifkin, J. Kim, K. P. White, Nat. Genet. 33, 138 (2003).
27. M. Turelli, J. H. Gillespie, R. Lande, Evolution Int. J. Org. Evol. 42, 1085 (1988).
28. J. H. McDonald, M. Kreitman, Nature 351, 652 (1991).
29. J. Wistuba et al., Biol. Reprod 69, 582 (2003).
30. B. Charlesworth, J. A. Coyne, N. H. Barton, Am. Nat. 130, 113 (1987).
31. G. J. Wyckoff, W. Wang, C. I. Wu, Nature 403, 304 (2000).
32. W. J. Swanson, V. D. Vacquier, Nat. Rev. Genet. 3, 137 (2002).
33. A. F. Dixson, Primate Sexuality (Oxford Univ. Press, Oxford, 1998).
34. P. Khaitovich, S. Paabo, G. Weiss, Genetics 170, 929.
35. W. Enard et al., Science 296, 340 (2002).
36. J. Gu, X. Gu, Trends Genet 19, 63 (2003).
37. M. Caceres et al., Proc. Natl. Acad. Sci. U.S.A. 100, 13030 (2003).
38. S. Dorus et al., Cell 119, 1027 (2004).
39. We thank T. Mikkelsen of the Broad Institute and all other members of the Chimpanzee Sequencing Consortium for sharing analysis results; C. Allen and H. McClure of the Yerkes Primate Center, Atlanta, and W. Collignon and R. Bontrop of the Biomedical Primate Research Centre, Rijswijk, for tissue samples; T. Arendt of the Paul Flechsig Institute, Leipzig, for dissections; H. B. Fraser, H. Kaessmann, L. Vigilant, and all members of our laboratory for discussion; and the Max Planck Society and the Bundesministerium für Bildung und Forschung for financial support.