-
2
-
-
53449102213
-
Characterization of megakaryocyte GATA1-interacting proteins: The corepressor ETO2 and GATA1 interact to regulate terminal megakaryocyte maturation
-
Hamlett I, Draper J, Strouboulis J, Iborra F, Porcher C, Vyas P. Characterization of megakaryocyte GATA1-interacting proteins: the corepressor ETO2 and GATA1 interact to regulate terminal megakaryocyte maturation. Blood. 2008;112(7):2738-2749.
-
(2008)
Blood
, vol.112
, Issue.7
, pp. 2738-2749
-
-
Hamlett, I.1
Draper, J.2
Strouboulis, J.3
Iborra, F.4
Porcher, C.5
Vyas, P.6
-
3
-
-
84893863046
-
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
-
Sherwood RI, Hashimoto T, O'Donnell CW, et al. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nat Biotechnol. 2014;32(2):171-178.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.2
, pp. 171-178
-
-
Sherwood, R.I.1
Hashimoto, T.2
O'Donnell, C.W.3
-
4
-
-
14544280757
-
Transcriptional regulation and the role of diverse coactivators in animal cells
-
Roeder RG. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett. 2005;579(4):909-915.
-
(2005)
FEBS Lett
, vol.579
, Issue.4
, pp. 909-915
-
-
Roeder, R.G.1
-
5
-
-
59149091124
-
Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility
-
Chickarmane V, Enver T, Peterson C. Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility. PLOS Comput Biol. 2009;5(1):e1000268.
-
(2009)
PLOS Comput Biol
, vol.5
, Issue.1
-
-
Chickarmane, V.1
Enver, T.2
Peterson, C.3
-
6
-
-
77955502318
-
Modeling reveals bistability and low-pass filtering in the network module determining blood stem cell fate
-
Narula J, Smith AM, Gottgens B, Igoshin OA. Modeling reveals bistability and low-pass filtering in the network module determining blood stem cell fate. PLOS Comput Biol. 2010;6(5):e1000771.
-
(2010)
PLOS Comput Biol
, vol.6
, Issue.5
-
-
Narula, J.1
Smith, A.M.2
Gottgens, B.3
Igoshin, O.A.4
-
7
-
-
80051505603
-
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network
-
Krumsiek J, Marr C, Schroeder T, Theis FJ. Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network. PLoS ONE. 2011;6(8):e22649.
-
(2011)
PLoS ONE
, vol.6
, Issue.8
-
-
Krumsiek, J.1
Marr, C.2
Schroeder, T.3
Theis, F.J.4
-
8
-
-
84879923473
-
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model
-
Bonzanni N, Garg A, Feenstra KA, et al. Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model. Bioinformatics. 2013;29(13):i80-i88.
-
(2013)
Bioinformatics
, vol.29
, Issue.13
, pp. i80-i88
-
-
Bonzanni, N.1
Garg, A.2
Feenstra, K.A.3
-
9
-
-
83755205792
-
Regulatory gene network circuits underlying T cell development from multipotent progenitors
-
Kueh HY, Rothenberg EV. Regulatory gene network circuits underlying T cell development from multipotent progenitors. Wiley Interdiscip Rev Syst Biol Med. 2012;4(1):79-102.
-
(2012)
Wiley Interdiscip Rev Syst Biol Med
, vol.4
, Issue.1
, pp. 79-102
-
-
Kueh, H.Y.1
Rothenberg, E.V.2
-
10
-
-
84899941272
-
Gene regulatory networks in the immune system
-
Singh H, Khan AA, Dinner AR. Gene regulatory networks in the immune system. Trends Immunol. 2014;35(5):211-218.
-
(2014)
Trends Immunol
, vol.35
, Issue.5
, pp. 211-218
-
-
Singh, H.1
Khan, A.A.2
Dinner, A.R.3
-
11
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
Friedman N. Inferring cellular networks using probabilistic graphical models. Science. 2004;303(5659):799-805.
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 799-805
-
-
Friedman, N.1
-
12
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker T, Thorsson V, Ranish JA, et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science. 2001;292(5518):929-934.
-
(2001)
Science
, vol.292
, Issue.5518
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
-
13
-
-
0033655775
-
Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements
-
Butte AJ, Kohane IS. Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. Pac Symp Biocomput. 2000;418-429.
-
(2000)
Pac Symp Biocomput
, pp. 418-429
-
-
Butte, A.J.1
Kohane, I.S.2
-
14
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin AA, Nemenman I, Basso K, et al. ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics. 2006;7(Suppl 1):S7.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. S7
-
-
Margolin, A.A.1
Nemenman, I.2
Basso, K.3
-
15
-
-
16844376909
-
Reverse engineering of regulatory networks in human B cells
-
Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A. Reverse engineering of regulatory networks in human B cells. Nat Genet. 2005;37(4):382-390.
-
(2005)
Nat Genet
, vol.37
, Issue.4
, pp. 382-390
-
-
Basso, K.1
Margolin, A.A.2
Stolovitzky, G.3
Klein, U.4
Dalla-Favera, R.5
Califano, A.6
-
16
-
-
33845306813
-
NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth
-
Palomero T, Lim WK, Odom DT, et al. NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth. Proc Natl Acad Sci USA. 2006;103(48):18261-18266.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.48
, pp. 18261-18266
-
-
Palomero, T.1
Lim, W.K.2
Odom, D.T.3
-
17
-
-
84862776920
-
Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL
-
Della Gatta G, Palomero T, Perez-Garcia A, et al. Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL. Nat Med. 2012;18(3):436-440.
-
(2012)
Nat Med
, vol.18
, Issue.3
, pp. 436-440
-
-
Della Gatta, G.1
Palomero, T.2
Perez-Garcia, A.3
-
18
-
-
39149143293
-
A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas
-
Mani KM, Lefebvre C, Wang K, et al. A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas. Mol Syst Biol. 2008;4:169.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 169
-
-
Mani, K.M.1
Lefebvre, C.2
Wang, K.3
-
19
-
-
75649090766
-
Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways
-
Zeng T, Li J. Maximization of negative correlations in time-course gene expression data for enhancing understanding of molecular pathways. Nucleic Acids Res. 2010;38(1):e1.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.1
, pp. e1
-
-
Zeng, T.1
Li, J.2
-
20
-
-
0037941585
-
Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
-
Segal E, Shapira M, Regev A, et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet. 2003;34(2):166-176.
-
(2003)
Nat Genet
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
-
21
-
-
78651486442
-
Densely interconnected transcriptional circuits control cell states in human hematopoiesis
-
Novershtern N, Subramanian A, Lawton LN, et al. Densely interconnected transcriptional circuits control cell states in human hematopoiesis. Cell. 2011;144(2):296-309.
-
(2011)
Cell
, vol.144
, Issue.2
, pp. 296-309
-
-
Novershtern, N.1
Subramanian, A.2
Lawton, L.N.3
-
22
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S, Benner C, Spann N, et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell. 2010;38(4):576-589.
-
(2010)
Mol Cell
, vol.38
, Issue.4
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
-
23
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science. 2007;316(5830):1497-1502.
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
24
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson G, Hirst M, Bainbridge M, et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods. 2007;4(8):651-657.
-
(2007)
Nat Methods
, vol.4
, Issue.8
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
-
25
-
-
84884885745
-
Building an ENCODE-style data compendium on a shoestring
-
Ruau D, Ng FS, Wilson NK, et al. Building an ENCODE-style data compendium on a shoestring. Nat Methods. 2013;10(10):926.
-
(2013)
Nat Methods
, vol.10
, Issue.10
, pp. 926
-
-
Ruau, D.1
Ng, F.S.2
Wilson, N.K.3
-
26
-
-
84887650018
-
Genome-wide analysis of transcriptional regulators in human HSPCs reveals a densely interconnected network of coding and noncoding genes
-
Beck D, Thoms JA, Perera D, et al. Genome-wide analysis of transcriptional regulators in human HSPCs reveals a densely interconnected network of coding and noncoding genes. Blood. 2013;122(14):e12-e22.
-
(2013)
Blood
, vol.122
, Issue.14
, pp. e12-e22
-
-
Beck, D.1
Thoms, J.A.2
Perera, D.3
-
27
-
-
84888218254
-
Genome-scale expression and transcription factor binding profiles reveal therapeutic targets in transgenic ERG myeloid leukemia
-
Goldberg L, Tijssen MR, Birger Y, et al. Genome-scale expression and transcription factor binding profiles reveal therapeutic targets in transgenic ERG myeloid leukemia. Blood. 2013;122(15):2694-2703.
-
(2013)
Blood
, vol.122
, Issue.15
, pp. 2694-2703
-
-
Goldberg, L.1
Tijssen, M.R.2
Birger, Y.3
-
28
-
-
84879447932
-
Genome-wide analysis shows that Ldb1 controls essential hematopoietic genes/pathways in mouse early development and reveals novel players in hematopoiesis
-
Mylona A, Andrieu-Soler C, Thongjuea S, et al. Genome-wide analysis shows that Ldb1 controls essential hematopoietic genes/pathways in mouse early development and reveals novel players in hematopoiesis. Blood. 2013;121(15):2902-2913.
-
(2013)
Blood
, vol.121
, Issue.15
, pp. 2902-2913
-
-
Mylona, A.1
Andrieu-Soler, C.2
Thongjuea, S.3
-
29
-
-
84861223149
-
The transcriptional programme controlled by Runx1 during early embryonic blood development
-
Tanaka Y, Joshi A, Wilson NK, Kinston S, Nishikawa S, Göttgens B. The transcriptional programme controlled by Runx1 during early embryonic blood development. Dev Biol. 2012;366(2):404-419.
-
(2012)
Dev Biol
, vol.366
, Issue.2
, pp. 404-419
-
-
Tanaka, Y.1
Joshi, A.2
Wilson, N.K.3
Kinston, S.4
Nishikawa, S.5
Göttgens, B.6
-
30
-
-
84867736794
-
Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis
-
Xu J, Shao Z, Glass K, et al. Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis. Dev Cell. 2012;23(4):796-811.
-
(2012)
Dev Cell
, vol.23
, Issue.4
, pp. 796-811
-
-
Xu, J.1
Shao, Z.2
Glass, K.3
-
31
-
-
84859157183
-
Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity
-
Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell. 2012;149(2):467-482.
-
(2012)
Cell
, vol.149
, Issue.2
, pp. 467-482
-
-
Zhang, J.A.1
Mortazavi, A.2
Williams, B.A.3
Wold, B.J.4
Rothenberg, E.V.5
-
32
-
-
70449696134
-
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
-
Cheng Y, Wu W, Kumar SA, et al. Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Genome Res. 2009;19(12):2172-2184.
-
(2009)
Genome Res
, vol.19
, Issue.12
, pp. 2172-2184
-
-
Cheng, Y.1
Wu, W.2
Kumar, S.A.3
-
33
-
-
84866891646
-
Three distinct patterns of histone H3Y41 phosphorylation mark active genes
-
Dawson MA, Foster SD, Bannister AJ, et al. Three distinct patterns of histone H3Y41 phosphorylation mark active genes. Cell Reports. 2012;2(3):470-477.
-
(2012)
Cell Reports
, vol.2
, Issue.3
, pp. 470-477
-
-
Dawson, M.A.1
Foster, S.D.2
Bannister, A.J.3
-
34
-
-
79951828280
-
GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells
-
Yu S, Cui K, Jothi R, et al. GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells. Blood. 2011;117(7):2166-2178.
-
(2011)
Blood
, vol.117
, Issue.7
, pp. 2166-2178
-
-
Yu, S.1
Cui, K.2
Jothi, R.3
-
35
-
-
84905174592
-
Hematopoietic transcriptional mechanisms: From locus-specific to genome-wide vantage points
-
DeVilbiss AW, Sanalkumar R, Johnson KD, Keles S, Bresnick EH. Hematopoietic transcriptional mechanisms: from locus-specific to genome-wide vantage points. Exp Hematol. 2014;42(8):618-629.
-
(2014)
Exp Hematol
, vol.42
, Issue.8
, pp. 618-629
-
-
DeVilbiss, A.W.1
Sanalkumar, R.2
Johnson, K.D.3
Keles, S.4
Bresnick, E.H.5
-
36
-
-
77957348625
-
Combinatorial transcriptional control in blood stem/progenitor cells: Genome-wide analysis of ten major transcriptional regulators
-
Wilson NK, Foster SD, Wang X, et al. Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. Cell Stem Cell. 2010;7(4):532-544.
-
(2010)
Cell Stem Cell
, vol.7
, Issue.4
, pp. 532-544
-
-
Wilson, N.K.1
Foster, S.D.2
Wang, X.3
-
37
-
-
84869232815
-
RUNX1 reshapes the epigenetic landscape at the onset of haematopoiesis
-
Lichtinger M, Ingram R, Hannah R, et al. RUNX1 reshapes the epigenetic landscape at the onset of haematopoiesis. EMBO J. 2012;31(22):4318-4333.
-
(2012)
EMBO J
, vol.31
, Issue.22
, pp. 4318-4333
-
-
Lichtinger, M.1
Ingram, R.2
Hannah, R.3
-
38
-
-
84901744138
-
Key regulators control distinct transcriptional programmes in blood progenitor and mast cells
-
Calero-Nieto FJ, Ng FS, Wilson NK, et al. Key regulators control distinct transcriptional programmes in blood progenitor and mast cells. EMBO J. 2014;33(11):1212-1226.
-
(2014)
EMBO J
, vol.33
, Issue.11
, pp. 1212-1226
-
-
Calero-Nieto, F.J.1
Ng, F.S.2
Wilson, N.K.3
-
39
-
-
84899692444
-
Function-based identification of mammalian enhancers using site-specific integration
-
Dickel DE, Zhu Y, Nord AS, et al. Function-based identification of mammalian enhancers using site-specific integration. Nat Methods. 2014;11(5):566-571.
-
(2014)
Nat Methods
, vol.11
, Issue.5
, pp. 566-571
-
-
Dickel, D.E.1
Zhu, Y.2
Nord, A.S.3
-
40
-
-
84908096164
-
Single site-specific integration targeting coupled with embryonic stem cell differentiation provides a high-throughput alternative to in vivo enhancer analyses
-
Wilkinson AC, Goode DK, Cheng YH, et al. Single site-specific integration targeting coupled with embryonic stem cell differentiation provides a high-throughput alternative to in vivo enhancer analyses. Biol Open. 2013;2(11):1229-1238.
-
(2013)
Biol Open
, vol.2
, Issue.11
, pp. 1229-1238
-
-
Wilkinson, A.C.1
Goode, D.K.2
Cheng, Y.H.3
-
41
-
-
84896727582
-
Heterogeneity and hierarchy of hematopoietic stem cells
-
Ema H, Morita Y, Suda T. Heterogeneity and hierarchy of hematopoietic stem cells. Exp Hematol. 2014;42(2):74-82.e72.
-
(2014)
Exp Hematol
, vol.42
, Issue.2
, pp. 74e72-82e72
-
-
Ema, H.1
Morita, Y.2
Suda, T.3
-
42
-
-
0025222785
-
Representative in vitro cDNA amplification from individual hemopoietic cells and colonies
-
Brady G, Barbara M, Iscove N. Representative in vitro cDNA amplification from individual hemopoietic cells and colonies. Methods Mol Cell Biol. 1990;2:17-25.
-
(1990)
Methods Mol Cell Biol
, vol.2
, pp. 17-25
-
-
Brady, G.1
Barbara, M.2
Iscove, N.3
-
43
-
-
0030042608
-
Opposing effects of the basic helix-loop-helix transcription factor SCL on erythroid and monocytic differentiation
-
Hoang T, Paradis E, Brady G, et al. Opposing effects of the basic helix-loop-helix transcription factor SCL on erythroid and monocytic differentiation. Blood. 1996;87(1):102-111.
-
(1996)
Blood
, vol.87
, Issue.1
, pp. 102-111
-
-
Hoang, T.1
Paradis, E.2
Brady, G.3
-
44
-
-
0030954167
-
Multilineage gene expression precedes commitment in the hemopoietic system
-
Hu M, Krause D, Greaves M, et al. Multilineage gene expression precedes commitment in the hemopoietic system. Genes Dev. 1997;11(6):774-785.
-
(1997)
Genes Dev
, vol.11
, Issue.6
, pp. 774-785
-
-
Hu, M.1
Krause, D.2
Greaves, M.3
-
45
-
-
84862778068
-
Inferring rules of lineage commitment in haematopoiesis
-
Pina C, Fugazza C, Tipping AJ, et al. Inferring rules of lineage commitment in haematopoiesis. Nat Cell Biol. 2012;14(3):287-294.
-
(2012)
Nat Cell Biol
, vol.14
, Issue.3
, pp. 287-294
-
-
Pina, C.1
Fugazza, C.2
Tipping, A.J.3
-
46
-
-
79959385536
-
An information theoretic, microfluidic-based single cell analysis permits identification of subpopulations among putatively homogeneous stem cells
-
Glotzbach JP, Januszyk M, Vial IN, et al. An information theoretic, microfluidic-based single cell analysis permits identification of subpopulations among putatively homogeneous stem cells. PLoS ONE. 2011;6(6):e21211.
-
(2011)
PLoS ONE
, vol.6
, Issue.6
-
-
Glotzbach, J.P.1
Januszyk, M.2
Vial, I.N.3
-
47
-
-
84876471008
-
Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
-
Moignard V, Macaulay IC, Swiers G, et al. Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis. Nat Cell Biol. 2013;15(4):363-372.
-
(2013)
Nat Cell Biol
, vol.15
, Issue.4
, pp. 363-372
-
-
Moignard, V.1
Macaulay, I.C.2
Swiers, G.3
-
48
-
-
84896714251
-
Transcriptional mechanisms of cell fate decisions revealed by single cell expression profiling
-
Moignard V, Göttgens B. Transcriptional mechanisms of cell fate decisions revealed by single cell expression profiling. BioEssays. 2014;36(4):419-426.
-
(2014)
BioEssays
, vol.36
, Issue.4
, pp. 419-426
-
-
Moignard, V.1
Göttgens, B.2
-
49
-
-
84885172419
-
Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire
-
Guo G, Luc S, Marco E, et al. Mapping cellular hierarchy by single-cell analysis of the cell surface repertoire. Cell Stem Cell. 2013;13(4):492-505.
-
(2013)
Cell Stem Cell
, vol.13
, Issue.4
, pp. 492-505
-
-
Guo, G.1
Luc, S.2
Marco, E.3
-
50
-
-
84900346600
-
Reconstruction of the mouse otocyst and early neuroblast lineage at single-cell resolution
-
Durruthy-Durruthy R, Gottlieb A, Hartman BH, et al. Reconstruction of the mouse otocyst and early neuroblast lineage at single-cell resolution. Cell. 2014;157(4):964-978.
-
(2014)
Cell
, vol.157
, Issue.4
, pp. 964-978
-
-
Durruthy-Durruthy, R.1
Gottlieb, A.2
Hartman, B.H.3
-
51
-
-
84899574465
-
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
-
Bendall SC, Davis KL, Amir AD, et al. Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development. Cell. 2014;157(3):714-725.
-
(2014)
Cell
, vol.157
, Issue.3
, pp. 714-725
-
-
Bendall, S.C.1
Davis, K.L.2
Amir, A.D.3
-
52
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
Trapnell C, Cacchiarelli D, Grimsby J, et al. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat Biotechnol. 2014;32(4):381-386.
-
(2014)
Nat Biotechnol
, vol.32
, Issue.4
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
-
53
-
-
84901188210
-
Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis
-
Mahata B, Zhang X, Kolodziejczyk AA, et al. Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis. Cell Reports. 2014;7(4):1130-1142.
-
(2014)
Cell Reports
, vol.7
, Issue.4
, pp. 1130-1142
-
-
Mahata, B.1
Zhang, X.2
Kolodziejczyk, A.A.3
-
54
-
-
84887109584
-
Accounting for technical noise in single-cell RNA-seq experiments
-
Brennecke P, Anders S, Kim JK, et al. Accounting for technical noise in single-cell RNA-seq experiments. Nat Methods. 2013;10(11):1093-1095.
-
(2013)
Nat Methods
, vol.10
, Issue.11
, pp. 1093-1095
-
-
Brennecke, P.1
Anders, S.2
Kim, J.K.3
-
55
-
-
68849103521
-
Mass cytometry: Technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry
-
Bandura DR, Baranov VI, Ornatsky OI, et al. Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry. Anal Chem. 2009;81(16):6813-6822.
-
(2009)
Anal Chem
, vol.81
, Issue.16
, pp. 6813-6822
-
-
Bandura, D.R.1
Baranov, V.I.2
Ornatsky, O.I.3
-
56
-
-
84903616029
-
Single-cell western blotting
-
Hughes AJ, Spelke DP, Xu Z, Kang CC, Schaffer DV, Herr AE. Single-cell western blotting. Nat Methods. 2014;11(7):749-755.
-
(2014)
Nat Methods
, vol.11
, Issue.7
, pp. 749-755
-
-
Hughes, A.J.1
Spelke, D.P.2
Xu, Z.3
Kang, C.C.4
Schaffer, D.V.5
Herr, A.E.6
-
57
-
-
84865369147
-
DNA methylation dynamics during in vivo differentiation of blood and skin stem cells
-
Bock C, Beerman I, Lien WH, et al. DNA methylation dynamics during in vivo differentiation of blood and skin stem cells. Mol Cell. 2012;47(4):633-647.
-
(2012)
Mol Cell
, vol.47
, Issue.4
, pp. 633-647
-
-
Bock, C.1
Beerman, I.2
Lien, W.H.3
-
58
-
-
77956902023
-
Comprehensive methylome map of lineage commitment from haematopoietic progenitors
-
Ji H, Ehrlich LI, Seita J, et al. Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature. 2010;467(7313):338-342.
-
(2010)
Nature
, vol.467
, Issue.7313
, pp. 338-342
-
-
Ji, H.1
Ehrlich, L.I.2
Seita, J.3
-
59
-
-
34547635995
-
Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis
-
Attema JL, Papathanasiou P, Forsberg EC, Xu J, Smale ST, Weissman IL. Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis. Proc Natl Acad Sci USA. 2007;104(30):12371-12376.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.30
, pp. 12371-12376
-
-
Attema, J.L.1
Papathanasiou, P.2
Forsberg, E.C.3
Xu, J.4
Smale, S.T.5
Weissman, I.L.6
-
60
-
-
84875965163
-
Proliferation-dependent alterations of the DNA methylation landscape underlie hematopoietic stem cell aging
-
Beerman I, Bock C, Garrison BS, et al. Proliferation-dependent alterations of the DNA methylation landscape underlie hematopoietic stem cell aging. Cell Stem Cell. 2013;12(4):413-425.
-
(2013)
Cell Stem Cell
, vol.12
, Issue.4
, pp. 413-425
-
-
Beerman, I.1
Bock, C.2
Garrison, B.S.3
-
61
-
-
84899768899
-
Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal
-
Sun D, Luo M, Jeong M, et al. Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal. Cell Stem Cell. 2014;14(5):673-688.
-
(2014)
Cell Stem Cell
, vol.14
, Issue.5
, pp. 673-688
-
-
Sun, D.1
Luo, M.2
Jeong, M.3
-
62
-
-
84907257107
-
Saturation editing of genomic regions by multiplex homology-directed repair
-
Findlay GM, Boyle EA, Hause RJ, Klein JC, Shendure J. Saturation editing of genomic regions by multiplex homology-directed repair. Nature. 2014;513(7516):120-123.
-
(2014)
Nature
, vol.513
, Issue.7516
, pp. 120-123
-
-
Findlay, G.M.1
Boyle, E.A.2
Hause, R.J.3
Klein, J.C.4
Shendure, J.5
-
63
-
-
77957762129
-
Dynamic interaction networks in a hierarchically organized tissue
-
Kirouac DC, Ito C, Csaszar E, et al. Dynamic interaction networks in a hierarchically organized tissue. Mol Syst Biol. 2010;6:417.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 417
-
-
Kirouac, D.C.1
Ito, C.2
Csaszar, E.3
-
64
-
-
84905393913
-
Intercellular network structure and regulatory motifs in the human hematopoietic system
-
Qiao W, Wang W, Laurenti E, et al. Intercellular network structure and regulatory motifs in the human hematopoietic system. Mol Syst Biol. 2014;10(7):741.
-
(2014)
Mol Syst Biol
, vol.10
, Issue.7
, pp. 741
-
-
Qiao, W.1
Wang, W.2
Laurenti, E.3
-
65
-
-
84898012347
-
Conversion of danger signals into cytokine signals by hematopoietic stem and progenitor cells for regulation of stress-induced hematopoiesis
-
Zhao JL, Ma C, O'Connell RM, et al. Conversion of danger signals into cytokine signals by hematopoietic stem and progenitor cells for regulation of stress-induced hematopoiesis. Cell Stem Cell. 2014;14(4):445-459.
-
(2014)
Cell Stem Cell
, vol.14
, Issue.4
, pp. 445-459
-
-
Zhao, J.L.1
Ma, C.2
O'Connell, R.M.3
-
66
-
-
77649335651
-
Molecular signatures of quiescent, mobilized and leukemia-initiating hematopoietic stem cells
-
Forsberg EC, Passegué E, Prohaska SS, et al. Molecular signatures of quiescent, mobilized and leukemia-initiating hematopoietic stem cells. PLoS ONE. 2010;5(1):e8785.
-
(2010)
PLoS ONE
, vol.5
, Issue.1
-
-
Forsberg, E.C.1
Passegué, E.2
Prohaska, S.S.3
-
67
-
-
21544467270
-
Cell intrinsic alterations underlie hematopoietic stem cell aging
-
Rossi DJ, Bryder D, Zahn JM, et al. Cell intrinsic alterations underlie hematopoietic stem cell aging. Proc Natl Acad Sci USA. 2005;102(26):9194-9199.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.26
, pp. 9194-9199
-
-
Rossi, D.J.1
Bryder, D.2
Zahn, J.M.3
-
68
-
-
34548208677
-
Aging hematopoietic stem cells decline in function and exhibit epigenetic dysregulation
-
Chambers SM, Shaw CA, Gatza C, Fisk CJ, Donehower LA, Goodell MA. Aging hematopoietic stem cells decline in function and exhibit epigenetic dysregulation. PLoS Biol. 2007;5(8):e201.
-
(2007)
PLoS Biol
, vol.5
, Issue.8
, pp. e201
-
-
Chambers, S.M.1
Shaw, C.A.2
Gatza, C.3
Fisk, C.J.4
Donehower, L.A.5
Goodell, M.A.6
-
69
-
-
84885115285
-
Induction of multipotential hematopoietic progenitors from human pluripotent stem cells via respecification of lineage-restricted precursors
-
Doulatov S, Vo LT, Chou SS, et al. Induction of multipotential hematopoietic progenitors from human pluripotent stem cells via respecification of lineage-restricted precursors. Cell Stem Cell. 2013;13(4):459-470.
-
(2013)
Cell Stem Cell
, vol.13
, Issue.4
, pp. 459-470
-
-
Doulatov, S.1
Vo, L.T.2
Chou, S.S.3
-
70
-
-
84881149632
-
Induction of a hemogenic program in mouse fibroblasts
-
Pereira CF, Chang B, Qiu J, et al. Induction of a hemogenic program in mouse fibroblasts. Cell Stem Cell. 2013;13(2):205-218.
-
(2013)
Cell Stem Cell
, vol.13
, Issue.2
, pp. 205-218
-
-
Pereira, C.F.1
Chang, B.2
Qiu, J.3
-
71
-
-
84904439259
-
Reprogramming human endothelial cells to haematopoietic cells requires vascular induction
-
Sandler VM, Lis R, Liu Y, et al. Reprogramming human endothelial cells to haematopoietic cells requires vascular induction. Nature. 2014;511(7509):312-318.
-
(2014)
Nature
, vol.511
, Issue.7509
, pp. 312-318
-
-
Sandler, V.M.1
Lis, R.2
Liu, Y.3
-
72
-
-
84899527626
-
Reprogramming committed murine blood cells to induced hematopoietic stem cells with defined factors
-
Riddell J, Gazit R, Garrison BS, et al. Reprogramming committed murine blood cells to induced hematopoietic stem cells with defined factors. Cell. 2014;157(3):549-564.
-
(2014)
Cell
, vol.157
, Issue.3
, pp. 549-564
-
-
Riddell, J.1
Gazit, R.2
Garrison, B.S.3
-
73
-
-
84862255345
-
Leukemia gene atlas - A public platform for integrative exploration of genome-wide molecular data
-
Hebestreit K, Gröttrup S, Emden D, et al. Leukemia gene atlas - a public platform for integrative exploration of genome-wide molecular data. PLoS ONE. 2012;7(6):e39148.
-
(2012)
PLoS ONE
, vol.7
, Issue.6
-
-
Hebestreit, K.1
Gröttrup, S.2
Emden, D.3
-
74
-
-
79955137160
-
A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms
-
Hannah R, Joshi A, Wilson NK, Kinston S, Göttgens B. A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms. Exp Hematol. 2011;39(5):531-541.
-
(2011)
Exp Hematol
, vol.39
, Issue.5
, pp. 531-541
-
-
Hannah, R.1
Joshi, A.2
Wilson, N.K.3
Kinston, S.4
Göttgens, B.5
|