-
1
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey T.L., Boden M., Buske F.A., Frith M., Grant C.E., Clementi L., Ren J., Li W.W., Noble W.S. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009, 37(Web Server issue):W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.WEB SERVER ISSUE
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
2
-
-
0032524337
-
Jak2-Stat5 interactions analyzed in yeast
-
Barahmand-Pour F., Meinke A., Groner B., Decker T. Jak2-Stat5 interactions analyzed in yeast. J. Biol. Chem. 1998, 273:12567-12575.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 12567-12575
-
-
Barahmand-Pour, F.1
Meinke, A.2
Groner, B.3
Decker, T.4
-
3
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A., Cuddapah S., Cui K., Roh T.Y., Schones D.E., Wang Z., Wei G., Chepelev I., Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
4
-
-
84859957094
-
Janus kinase deregulation in leukemia and lymphoma
-
Chen E., Staudt L.M., Green A.R. Janus kinase deregulation in leukemia and lymphoma. Immunity 2012, 36:529-541.
-
(2012)
Immunity
, vol.36
, pp. 529-541
-
-
Chen, E.1
Staudt, L.M.2
Green, A.R.3
-
5
-
-
70349975711
-
JAK2 phosphorylates histone H3Y41 and excludes HP1alpha from chromatin
-
Dawson M.A., Bannister A.J., Göttgens B., Foster S.D., Bartke T., Green A.R., Kouzarides T. JAK2 phosphorylates histone H3Y41 and excludes HP1alpha from chromatin. Nature 2009, 461:819-822.
-
(2009)
Nature
, vol.461
, pp. 819-822
-
-
Dawson, M.A.1
Bannister, A.J.2
Göttgens, B.3
Foster, S.D.4
Bartke, T.5
Green, A.R.6
Kouzarides, T.7
-
6
-
-
77953510760
-
AT9283, a potent inhibitor of the Aurora kinases and Jak2, has therapeutic potential in myeloproliferative disorders
-
Dawson M.A., Curry J.E., Barber K., Beer P.A., Graham B., Lyons J.F., Richardson C.J., Scott M.A., Smyth T., Squires M.S., et al. AT9283, a potent inhibitor of the Aurora kinases and Jak2, has therapeutic potential in myeloproliferative disorders. Br. J. Haematol. 2010, 150:46-57.
-
(2010)
Br. J. Haematol.
, vol.150
, pp. 46-57
-
-
Dawson, M.A.1
Curry, J.E.2
Barber, K.3
Beer, P.A.4
Graham, B.5
Lyons, J.F.6
Richardson, C.J.7
Scott, M.A.8
Smyth, T.9
Squires, M.S.10
-
8
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G., Sherman B.T., Hosack D.A., Yang J., Gao W., Lane H.C., Lempicki R.A. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4:3.
-
(2003)
Genome Biol.
, vol.4
, pp. 3
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
9
-
-
0033595087
-
IL-3 dependent regulation of Bcl-xL gene expression by STAT5 in a bone marrow derived cell line
-
Dumon S., Santos S.C., Debierre-Grockiego F., Gouilleux-Gruart V., Cocault L., Boucheron C., Mollat P., Gisselbrecht S., Gouilleux F. IL-3 dependent regulation of Bcl-xL gene expression by STAT5 in a bone marrow derived cell line. Oncogene 1999, 18:4191-4199.
-
(1999)
Oncogene
, vol.18
, pp. 4191-4199
-
-
Dumon, S.1
Santos, S.C.2
Debierre-Grockiego, F.3
Gouilleux-Gruart, V.4
Cocault, L.5
Boucheron, C.6
Mollat, P.7
Gisselbrecht, S.8
Gouilleux, F.9
-
10
-
-
48249140621
-
FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
-
Fejes A.P., Robertson G., Bilenky M., Varhol R., Bainbridge M., Jones S.J. FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinformatics 2008, 24:1729-1730.
-
(2008)
Bioinformatics
, vol.24
, pp. 1729-1730
-
-
Fejes, A.P.1
Robertson, G.2
Bilenky, M.3
Varhol, R.4
Bainbridge, M.5
Jones, S.J.6
-
11
-
-
78650516974
-
LIF-independent JAK signalling to chromatin in embryonic stem cells uncovered from an adult stem cell disease
-
Griffiths D.S., Li J., Dawson M.A., Trotter M.W., Cheng Y.H., Smith A.M., Mansfield W., Liu P., Kouzarides T., Nichols J., et al. LIF-independent JAK signalling to chromatin in embryonic stem cells uncovered from an adult stem cell disease. Nat. Cell Biol. 2011, 13:13-21.
-
(2011)
Nat. Cell Biol.
, vol.13
, pp. 13-21
-
-
Griffiths, D.S.1
Li, J.2
Dawson, M.A.3
Trotter, M.W.4
Cheng, Y.H.5
Smith, A.M.6
Mansfield, W.7
Liu, P.8
Kouzarides, T.9
Nichols, J.10
-
12
-
-
70350340058
-
Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling
-
Hu S., Xie Z., Onishi A., Yu X., Jiang L., Lin J., Rho H.S., Woodard C., Wang H., Jeong J.S., et al. Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling. Cell 2009, 139:610-622.
-
(2009)
Cell
, vol.139
, pp. 610-622
-
-
Hu, S.1
Xie, Z.2
Onishi, A.3
Yu, X.4
Jiang, L.5
Lin, J.6
Rho, H.S.7
Woodard, C.8
Wang, H.9
Jeong, J.S.10
-
13
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
14
-
-
2942709503
-
Hes binding to STAT3 mediates crosstalk between Notch and JAK-STAT signalling
-
Kamakura S., Oishi K., Yoshimatsu T., Nakafuku M., Masuyama N., Gotoh Y. Hes binding to STAT3 mediates crosstalk between Notch and JAK-STAT signalling. Nat. Cell Biol. 2004, 6:547-554.
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 547-554
-
-
Kamakura, S.1
Oishi, K.2
Yoshimatsu, T.3
Nakafuku, M.4
Masuyama, N.5
Gotoh, Y.6
-
15
-
-
80053021790
-
Transcriptional control of adrenal steroidogenesis: novel connection between Janus kinase (JAK) 2 protein and protein kinase A (PKA) through stabilization of cAMP response element-binding protein (CREB) transcription factor
-
Lefrancois-Martinez A.M., Blondet-Trichard A., Binart N., Val P., Chambon C., Sahut-Barnola I., Pointud J.C., Martinez A. Transcriptional control of adrenal steroidogenesis: novel connection between Janus kinase (JAK) 2 protein and protein kinase A (PKA) through stabilization of cAMP response element-binding protein (CREB) transcription factor. J. Biol. Chem. 2011, 286:32976-32985.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 32976-32985
-
-
Lefrancois-Martinez, A.M.1
Blondet-Trichard, A.2
Binart, N.3
Val, P.4
Chambon, C.5
Sahut-Barnola, I.6
Pointud, J.C.7
Martinez, A.8
-
16
-
-
33750040230
-
Structure, function, and regulation of STAT proteins
-
Lim C.P., Cao X. Structure, function, and regulation of STAT proteins. Mol. Biosyst. 2006, 2:536-550.
-
(2006)
Mol. Biosyst.
, vol.2
, pp. 536-550
-
-
Lim, C.P.1
Cao, X.2
-
17
-
-
79751486147
-
JAK2V617F-mediated phosphorylation of PRMT5 downregulates its methyltransferase activity and promotes myeloproliferation
-
Liu F., Zhao X., Perna F., Wang L., Koppikar P., Abdel-Wahab O., Harr M.W., Levine R.L., Xu H., Tefferi A., et al. JAK2V617F-mediated phosphorylation of PRMT5 downregulates its methyltransferase activity and promotes myeloproliferation. Cancer Cell 2011, 19:283-294.
-
(2011)
Cancer Cell
, vol.19
, pp. 283-294
-
-
Liu, F.1
Zhao, X.2
Perna, F.3
Wang, L.4
Koppikar, P.5
Abdel-Wahab, O.6
Harr, M.W.7
Levine, R.L.8
Xu, H.9
Tefferi, A.10
-
18
-
-
0030956715
-
CIS, a cytokine inducible SH2 protein, is a target of the JAK-STAT5 pathway and modulates STAT5 activation
-
Matsumoto A., Masuhara M., Mitsui K., Yokouchi M., Ohtsubo M., Misawa H., Miyajima A., Yoshimura A. CIS, a cytokine inducible SH2 protein, is a target of the JAK-STAT5 pathway and modulates STAT5 activation. Blood 1997, 89:3148-3154.
-
(1997)
Blood
, vol.89
, pp. 3148-3154
-
-
Matsumoto, A.1
Masuhara, M.2
Mitsui, K.3
Yokouchi, M.4
Ohtsubo, M.5
Misawa, H.6
Miyajima, A.7
Yoshimura, A.8
-
19
-
-
77952214662
-
GREAT improves functional interpretation of cis-regulatory regions
-
McLean C.Y., Bristor D., Hiller M., Clarke S.L., Schaar B.T., Lowe C.B., Wenger A.M., Bejerano G. GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol. 2010, 28:495-501.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 495-501
-
-
McLean, C.Y.1
Bristor, D.2
Hiller, M.3
Clarke, S.L.4
Schaar, B.T.5
Lowe, C.B.6
Wenger, A.M.7
Bejerano, G.8
-
20
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min I.M., Waterfall J.J., Core L.J., Munroe R.J., Schimenti J., Lis J.T. Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev. 2011, 25:742-754.
-
(2011)
Genes Dev.
, vol.25
, pp. 742-754
-
-
Min, I.M.1
Waterfall, J.J.2
Core, L.J.3
Munroe, R.J.4
Schimenti, J.5
Lis, J.T.6
-
21
-
-
0029892399
-
Suppression of interleukin-3-induced gene expression by a C-terminal truncated Stat5: role of Stat5 in proliferation
-
Mui A.L., Wakao H., Kinoshita T., Kitamura T., Miyajima A. Suppression of interleukin-3-induced gene expression by a C-terminal truncated Stat5: role of Stat5 in proliferation. EMBO J. 1996, 15:2425-2433.
-
(1996)
EMBO J.
, vol.15
, pp. 2425-2433
-
-
Mui, A.L.1
Wakao, H.2
Kinoshita, T.3
Kitamura, T.4
Miyajima, A.5
-
22
-
-
70350087559
-
STAT5 regulation of BCL10 parallels constitutive NFkappaB activation in lymphoid tumor cells
-
Nagy Z.S., LeBaron M.J., Ross J.A., Mitra A., Rui H., Kirken R.A. STAT5 regulation of BCL10 parallels constitutive NFkappaB activation in lymphoid tumor cells. Mol. Cancer 2009, 8:67.
-
(2009)
Mol. Cancer
, vol.8
, pp. 67
-
-
Nagy, Z.S.1
LeBaron, M.J.2
Ross, J.A.3
Mitra, A.4
Rui, H.5
Kirken, R.A.6
-
23
-
-
33746531672
-
Nuclear Jak2 and transcription factor NF1-C2: a novel mechanism of prolactin signaling in mammary epithelial cells
-
Nilsson J., Bjursell G., Kannius-Janson M. Nuclear Jak2 and transcription factor NF1-C2: a novel mechanism of prolactin signaling in mammary epithelial cells. Mol. Cell. Biol. 2006, 26:5663-5674.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 5663-5674
-
-
Nilsson, J.1
Bjursell, G.2
Kannius-Janson, M.3
-
24
-
-
60149112271
-
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
-
Rozowsky J., Euskirchen G., Auerbach R.K., Zhang Z.D., Gibson T., Bjornson R., Carriero N., Snyder M., Gerstein M.B. PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. Nat. Biotechnol. 2009, 27:66-75.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 66-75
-
-
Rozowsky, J.1
Euskirchen, G.2
Auerbach, R.K.3
Zhang, Z.D.4
Gibson, T.5
Bjornson, R.6
Carriero, N.7
Snyder, M.8
Gerstein, M.B.9
-
25
-
-
78650012116
-
Cooperative epigenetic modulation by cancer amplicon genes
-
Rui L., Emre N.C., Kruhlak M.J., Chung H.J., Steidl C., Slack G., Wright G.W., Lenz G., Ngo V.N., Shaffer A.L., et al. Cooperative epigenetic modulation by cancer amplicon genes. Cancer Cell 2010, 18:590-605.
-
(2010)
Cancer Cell
, vol.18
, pp. 590-605
-
-
Rui, L.1
Emre, N.C.2
Kruhlak, M.J.3
Chung, H.J.4
Steidl, C.5
Slack, G.6
Wright, G.W.7
Lenz, G.8
Ngo, V.N.9
Shaffer, A.L.10
-
26
-
-
0000943469
-
Stat5a and Stat5b proteins have essential and nonessential, or redundant, roles in cytokine responses
-
Teglund S., McKay C., Schuetz E., van Deursen J.M., Stravopodis D., Wang D., Brown M., Bodner S., Grosveld G., Ihle J.N. Stat5a and Stat5b proteins have essential and nonessential, or redundant, roles in cytokine responses. Cell 1998, 93:841-850.
-
(1998)
Cell
, vol.93
, pp. 841-850
-
-
Teglund, S.1
McKay, C.2
Schuetz, E.3
van Deursen, J.M.4
Stravopodis, D.5
Wang, D.6
Brown, M.7
Bodner, S.8
Grosveld, G.9
Ihle, J.N.10
-
28
-
-
67049108075
-
The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development
-
Wilson N.K., Miranda-Saavedra D., Kinston S., Bonadies N., Foster S.D., Calero-Nieto F., Dawson M.A., Donaldson I.J., Dumon S., Frampton J., et al. The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood 2009, 113:5456-5465.
-
(2009)
Blood
, vol.113
, pp. 5456-5465
-
-
Wilson, N.K.1
Miranda-Saavedra, D.2
Kinston, S.3
Bonadies, N.4
Foster, S.D.5
Calero-Nieto, F.6
Dawson, M.A.7
Donaldson, I.J.8
Dumon, S.9
Frampton, J.10
-
29
-
-
70349237566
-
ID1 promotes expansion and survival of primary erythroid cells and is a target of JAK2V617F-STAT5 signaling
-
Wood A.D., Chen E., Donaldson I.J., Hattangadi S., Burke K.A., Dawson M.A., Miranda-Saavedra D., Lodish H.F., Green A.R., Göttgens B. ID1 promotes expansion and survival of primary erythroid cells and is a target of JAK2V617F-STAT5 signaling. Blood 2009, 114:1820-1830.
-
(2009)
Blood
, vol.114
, pp. 1820-1830
-
-
Wood, A.D.1
Chen, E.2
Donaldson, I.J.3
Hattangadi, S.4
Burke, K.A.5
Dawson, M.A.6
Miranda-Saavedra, D.7
Lodish, H.F.8
Green, A.R.9
Göttgens, B.10
-
30
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y., Liu T., Meyer C.A., Eeckhoute J., Johnson D.S., Bernstein B.E., Nusbaum C., Myers R.M., Brown M., Li W., Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008, 9:R137.
-
(2008)
Genome Biol.
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
31
-
-
84863011066
-
Dynamic, sex-differential STAT5 and BCL6 binding to sex-biased, growth hormone-regulated genes in adult mouse liver
-
Zhang Y., Laz E.V., Waxman D.J. Dynamic, sex-differential STAT5 and BCL6 binding to sex-biased, growth hormone-regulated genes in adult mouse liver. Mol. Cell. Biol. 2012, 32:880-896.
-
(2012)
Mol. Cell. Biol.
, vol.32
, pp. 880-896
-
-
Zhang, Y.1
Laz, E.V.2
Waxman, D.J.3
-
32
-
-
34250366235
-
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
-
Zhang Z.D., Paccanaro A., Fu Y., Weissman S., Weng Z., Chang J., Snyder M., Gerstein M.B. Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions. Genome Res. 2007, 17:787-797.
-
(2007)
Genome Res.
, vol.17
, pp. 787-797
-
-
Zhang, Z.D.1
Paccanaro, A.2
Fu, Y.3
Weissman, S.4
Weng, Z.5
Chang, J.6
Snyder, M.7
Gerstein, M.B.8
|