-
1
-
-
0032582512
-
Transcriptional regulation of the stem cell leukemia gene by PU.1 and Elf-1
-
Bockamp, E.O. et al. (1998) Transcriptional regulation of the stem cell leukemia gene by PU.1 and Elf-1. J. Biol. Chem., 273, 29032-29042.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 29032-29042
-
-
Bockamp, E.O.1
-
2
-
-
68549085469
-
Executing multicellular differentiation: Quantitative predictive modelling of C.elegans vulval development
-
Bonzanni, N. et al. (2009) Executing multicellular differentiation: Quantitative predictive modelling of C.elegans vulval development. Bioinformatics, 25, 2049-2056.
-
(2009)
Bioinformatics
, vol.25
, pp. 2049-2056
-
-
Bonzanni, N.1
-
3
-
-
70649106320
-
-
In: FM 2009: Formal Methods, Lecture Notes in Computer Science., Berlin/Heidelberg Springer
-
Bonzanni, N. et al. (2009) What can formal methods bring to systems biology?. In: FM 2009: Formal Methods, Lecture Notes in Computer Science. Vol. 5850, Berlin/Heidelberg, Springer, pp. 16-22.
-
(2009)
What can Formal Methods bring to Systems Biology?
, vol.5850
, pp. 16-22
-
-
Bonzanni, N.1
-
4
-
-
70350596826
-
A robust and highly efficient immune cell reprogramming system
-
Bussmann, L.H. et al. (2009) A robust and highly efficient immune cell reprogramming system. Cell Stem Cell, 5, 554-566.
-
(2009)
Cell Stem Cell
, vol.5
, pp. 554-566
-
-
Bussmann, L.H.1
-
5
-
-
35848943273
-
Hematopoietic fingerprints: An expression database of stem cells and their progeny
-
Chambers, S.M. et al. (2007) Hematopoietic fingerprints: An expression database of stem cells and their progeny. Cell Stem Cell, 1, 578-591.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 578-591
-
-
Chambers, S.M.1
-
6
-
-
59149091124
-
Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity priming, and irreversibility
-
Chickarmane, V. et al. (2009) Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility. PLoS Comput. Biol., 5, e1000268.
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Chickarmane, V.1
-
7
-
-
0029129304
-
Adult acute lymphoblastic leukemia at relapse. Cytogenetic immunophenotypic, and molecular changes
-
Chucrallah, A.E. et al. (1995) Adult acute lymphoblastic leukemia at relapse. Cytogenetic, immunophenotypic, and molecular changes. Cancer, 76, 985-991.
-
(1995)
Cancer
, vol.76
, pp. 985-991
-
-
Chucrallah, A.E.1
-
8
-
-
45849093636
-
Boolean network model predicts cell cycle sequence of fission yeast
-
Davidich, M.I. and Bornholdt, S. (2008) Boolean network model predicts cell cycle sequence of fission yeast. PLoS One, 3, e1672.
-
(2008)
PLoS One
, vol.3
-
-
Davidich, M.I.1
Bornholdt, S.2
-
10
-
-
0036500609
-
A genomic regulatory network for development
-
Davidson, E.H. et al. (2002) A genomic regulatory network for development. Science, 295, 1669-1678.
-
(2002)
Science
, vol.295
, pp. 1669-1678
-
-
Davidson, E.H.1
-
11
-
-
80054746874
-
CCAAT/enhancer binding protein alpha (C/EBP(alpha))-induced transdifferentiation of pre-B cells into macrophages involves no overt retrodifferentiation
-
Di Tullio, A. et al. (2011) CCAAT/enhancer binding protein alpha (C/EBP(alpha))-induced transdifferentiation of pre-B cells into macrophages involves no overt retrodifferentiation. Proc. Natl Acad. Sci. USA, 108, 17016-17021.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 17016-17021
-
-
Di Tullio, A.1
-
12
-
-
14644412924
-
Genome-wide identification of cis-regulatory sequences controlling blood and endothelial development
-
Donaldson, I.J. et al. (2005) Genome-wide identification of cis-regulatory sequences controlling blood and endothelial development. Hum. Mol. Genet., 14, 595-601.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 595-601
-
-
Donaldson, I.J.1
-
13
-
-
14644412924
-
Genome-wide identification of cis-regulatory sequences controlling blood and endothelial development
-
Donaldson, I.J. et al. (2005) Genome-wide identification of cis-regulatory sequences controlling blood and endothelial development. Hum. Mol. Genet., 14, 595-601.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 595-601
-
-
Donaldson, I.J.1
-
14
-
-
72949096573
-
From genes to cells to tissues-modelling the haematopoietic system
-
Foster, S.D. et al. (2009) From genes to cells to tissues-modelling the haematopoietic system. Mol. Biosyst., 5, 1413-1420.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1413-1420
-
-
Foster, S.D.1
-
15
-
-
50549088838
-
Synchronous versus asynchronous modeling of gene regulatory networks
-
Garg, A. et al. (2008) Synchronous versus asynchronous modeling of gene regulatory networks. Bioinformatics, 24, 1917-1925.
-
(2008)
Bioinformatics
, vol.24
, pp. 1917-1925
-
-
Garg, A.1
-
16
-
-
66349086263
-
Modeling stochasticity and robustness in gene regulatory networks
-
Garg, A. et al. (2009) Modeling stochasticity and robustness in gene regulatory networks. Bioinformatics, 25, i101-i109.
-
(2009)
Bioinformatics
, vol.25
-
-
Garg, A.1
-
17
-
-
58149488711
-
A gene regulatory network armature for T lymphocyte specification
-
Georgescu, C. et al. (2008) A gene regulatory network armature for T lymphocyte specification. Proc. Natl Acad. Sci. USA, 105, 20100-20105.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20100-20105
-
-
Georgescu, C.1
-
18
-
-
4344660909
-
Transcriptional regulation of haematopoiesis
-
Göttgens, B. (2004) Transcriptional regulation of haematopoiesis. Vox Sang., 87 (Suppl. 1), 15-19.
-
(2004)
Vox Sang.
, vol.87
, Issue.SUPPL.1
, pp. 15-19
-
-
Göttgens, B.1
-
19
-
-
0030732851
-
Transcription of the SCL gene in erythroid and CD34 positive primitive myeloid cells is controlled by a complex network of lineagerestricted chromatin-dependent and chromatin-independent regulatory elements
-
Göttgens, B. et al. (1997) Transcription of the SCL gene in erythroid and CD34 positive primitive myeloid cells is controlled by a complex network of lineagerestricted chromatin-dependent and chromatin-independent regulatory elements. Oncogene, 15, 2419-2428.
-
(1997)
Oncogene
, vol.15
, pp. 2419-2428
-
-
Göttgens, B.1
-
20
-
-
18444415449
-
Establishing the transcriptional programme for blood: The SCL stem cell enhancer is regulated by a multiprotein complex containing Ets and GATA factors
-
Göttgens, B. et al. (2002) Establishing the transcriptional programme for blood: The SCL stem cell enhancer is regulated by a multiprotein complex containing Ets and GATA factors. EMBO J., 21, 3039-3050.
-
(2002)
EMBO J.
, vol.21
, pp. 3039-3050
-
-
Göttgens, B.1
-
21
-
-
2942526253
-
The scl +18/19 stem cell enhancer is not required for hematopoiesis: Identification of a 50 bifunctional hematopoietic-endothelial enhancer bound by Fli-1 and Elf-1
-
Göttgens, B. et al. (2004) The scl +18/19 stem cell enhancer is not required for hematopoiesis: Identification of a 50 bifunctional hematopoietic-endothelial enhancer bound by Fli-1 and Elf-1. Mol. Cell. Biol., 24, 1870-1883.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1870-1883
-
-
Göttgens, B.1
-
22
-
-
0041806587
-
GATA-1-dependent transcriptional repression of GATA-2 via disruption of positive autoregulation and domain-wide chromatin remodeling
-
Grass, J.A. et al. (2003) GATA-1-dependent transcriptional repression of GATA-2 via disruption of positive autoregulation and domain-wide chromatin remodeling. Proc. Natl Acad. Sci. USA, 100, 8811-8816.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 8811-8816
-
-
Grass, J.A.1
-
23
-
-
0037099497
-
Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells
-
Heyworth, C. et al. (2002) Transcription factor-mediated lineage switching reveals plasticity in primary committed progenitor cells. EMBO J., 21, 3770-3781.
-
(2002)
EMBO J.
, vol.21
, pp. 3770-3781
-
-
Heyworth, C.1
-
24
-
-
0037174669
-
Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop
-
Hirata, H. et al. (2002) Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop. Science, 298, 840-843.
-
(2002)
Science
, vol.298
, pp. 840-843
-
-
Hirata, H.1
-
25
-
-
0030954167
-
Multilineage gene expression precedes commitment in the hemopoietic system
-
Hu, M. et al. (1997)Multilineage gene expression precedes commitment in the hemopoietic system. Genes Dev., 11, 774-785.
-
(1997)
Genes Dev.
, vol.11
, pp. 774-785
-
-
Hu, M.1
-
26
-
-
34247629588
-
Genetic reconstruction of a functional transcriptional regulatory network
-
Hu, Z. et al. (2007) Genetic reconstruction of a functional transcriptional regulatory network. Nat. Genet., 39, 683-687.
-
(2007)
Nat. Genet.
, vol.39
, pp. 683-687
-
-
Hu, Z.1
-
27
-
-
70450162700
-
Non-genetic heterogeneity of cells in development: Nore than just noise
-
Huang, S. (2009) Non-genetic heterogeneity of cells in development: Nore than just noise. Development, 136, 3853-3862.
-
(2009)
Development
, vol.136
, pp. 3853-3862
-
-
Huang, S.1
-
28
-
-
52649087274
-
Modelling and analysis of gene regulatory networks
-
Karlebach, G. and Shamir, R. (2008) Modelling and analysis of gene regulatory networks. Nat. Rev. Mol. Cell Biol., 9, 770-780.
-
(2008)
Nat. Rev. Mol. Cell Biol.
, vol.9
, pp. 770-780
-
-
Karlebach, G.1
Shamir, R.2
-
29
-
-
0345598902
-
Random boolean network models and the yeast transcriptional network
-
Kauffman, S. et al. (2003) Random Boolean network models and the yeast transcriptional network. Proc. Natl Acad. Sci. USA, 100, 14796-14799.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 14796-14799
-
-
Kauffman, S.1
-
30
-
-
33646337667
-
A methodology for the structural and functional analysis of signaling and regulatory networks
-
Klamt, S. et al. (2006) A methodology for the structural and functional analysis of signaling and regulatory networks. BMC Bioinformatics, 7, 56.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 56
-
-
Klamt, S.1
-
31
-
-
23344452957
-
GATA motifs regulate early hematopoietic lineage-specific expression of the Gata2 gene
-
Kobayashi-Osaki, M. et al. (2005) GATA motifs regulate early hematopoietic lineage-specific expression of the Gata2 gene. Mol. Cell. Biol., 25, 7005-7020.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 7005-7020
-
-
Kobayashi-Osaki, M.1
-
32
-
-
80051505603
-
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network
-
Krumsiek, J. et al. (2011) Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network. PLoS One, 6, e22649.
-
(2011)
PLoS One
, vol.6
-
-
Krumsiek, J.1
-
33
-
-
0029066359
-
GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts
-
Kulessa, H. et al. (1995) GATA-1 reprograms avian myelomonocytic cell lines into eosinophils, thromboblasts, and erythroblasts. Genes Dev., 9, 1250-1262.
-
(1995)
Genes Dev.
, vol.9
, pp. 1250-1262
-
-
Kulessa, H.1
-
34
-
-
0842332406
-
Dynamics of the p53-Mdm2 feedback loop in individual cells
-
Lahav, G. et al. (2004) Dynamics of the p53-Mdm2 feedback loop in individual cells. Nat. Genet., 36, 147-150.
-
(2004)
Nat. Genet.
, vol.36
, pp. 147-150
-
-
Lahav, G.1
-
35
-
-
42449101777
-
Runx genes are direct targets of Scl/Tal1 in the yolk sac and fetal liver
-
Landry, J.R. et al. (2008) Runx genes are direct targets of Scl/Tal1 in the yolk sac and fetal liver. Blood, 111, 3005-3014.
-
(2008)
Blood
, vol.111
, pp. 3005-3014
-
-
Landry, J.R.1
-
36
-
-
1842687878
-
The yeast cell-cycle network is robustly designed
-
Li, F. et al. (2004) The yeast cell-cycle network is robustly designed. Proc. Natl Acad. Sci. USA, 101, 4781-4786.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 4781-4786
-
-
Li, F.1
-
37
-
-
1642351580
-
Role of RUNX1 in adult hematopoiesis: Analysis of RUNX1-IRES-GFP knock-in mice reveals differential lineage expression
-
Lorsbach, R.B. et al. (2004) Role of RUNX1 in adult hematopoiesis: Analysis of RUNX1-IRES-GFP knock-in mice reveals differential lineage expression. Blood, 103, 2522-2529.
-
(2004)
Blood
, vol.103
, pp. 2522-2529
-
-
Lorsbach, R.B.1
-
38
-
-
77957308820
-
Timing robustness in the budding and fission yeast cell cycles
-
Mangla, K. et al. (2010) Timing robustness in the budding and fission yeast cell cycles. PLoS One, 5, e8906.
-
(2010)
PLoS One
, vol.5
-
-
Mangla, K.1
-
39
-
-
33646346114
-
A method for the generation of standardized qualitative dynamical systems of regulatory networks
-
Mendoza, L. and Xenarios, I. (2006) A method for the generation of standardized qualitative dynamical systems of regulatory networks. Theor. Biol. Med. Model, 3, 13.
-
(2006)
Theor. Biol. Med. Model
, vol.3
, pp. 13
-
-
Mendoza, L.1
Xenarios, I.2
-
40
-
-
79953721660
-
Global gene expression analysis of human erythroid progenitors
-
Merryweather-Clarke, A.T. et al. (2011) Global gene expression analysis of human erythroid progenitors. Blood, 117, 96-108.
-
(2011)
Blood
, vol.117
, pp. 96-108
-
-
Merryweather-Clarke, A.T.1
-
41
-
-
58549117664
-
Transcriptional regulatory networks in haematopoiesis
-
Miranda-Saavedra, D. and Göttgens, B. (2008) Transcriptional regulatory networks in haematopoiesis. Curr. Opin. Genet. Dev., 18, 530-535.
-
(2008)
Curr. Opin. Genet. Dev.
, vol.18
, pp. 530-535
-
-
Miranda-Saavedra, D.1
Göttgens, B.2
-
42
-
-
38349165800
-
Runx1-mediated hematopoietic stem-cell emergence is controlled by a Gata/Ets/SCL-regulated enhancer
-
Nottingham, W.T. et al. (2007) Runx1-mediated hematopoietic stem-cell emergence is controlled by a Gata/Ets/SCL-regulated enhancer. Blood, 110, 4188-4197.
-
(2007)
Blood
, vol.110
, pp. 4188-4197
-
-
Nottingham, W.T.1
-
43
-
-
20144368117
-
Potential autoregulation of transcription factor PU.1 by an upstream regulatory element
-
Okuno, Y. et al. (2005) Potential autoregulation of transcription factor PU.1 by an upstream regulatory element. Mol. Cell. Biol., 25, 2832-2845.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 2832-2845
-
-
Okuno, Y.1
-
44
-
-
36749094041
-
Gata2 Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development
-
Pimanda, J.E. et al. (2007) Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development. Proc. Natl Acad. Sci. USA., 104, 17692-17697.
-
(2007)
Proc. Natl Acad. Sci. USA.
, vol.104
, pp. 17692-17697
-
-
Pimanda, J.E.1
-
45
-
-
84862778068
-
Inferring rules of lineage commitment in haematopoiesis
-
Pina, C. et al. (2012) Inferring rules of lineage commitment in haematopoiesis. Nat. Cell Biol., 14, 287-294.
-
(2012)
Nat. Cell Biol.
, vol.14
, pp. 287-294
-
-
Pina, C.1
-
46
-
-
33749444296
-
Evidence for diversity in transcriptional profiles of single hematopoietic stem cells
-
Ramos, C.A. et al. (2006) Evidence for diversity in transcriptional profiles of single hematopoietic stem cells. PLoS Genet., 2, e159.
-
(2006)
PLoS Genet.
, vol.2
-
-
Ramos, C.A.1
-
47
-
-
33746040437
-
Towards an understanding of lineage specification in hematopoietic stem cells: A mathematical model for the interaction of transcription factors GATA-1 and PU.1
-
Roeder, I. and Glauche, I. (2006) Towards an understanding of lineage specification in hematopoietic stem cells: A mathematical model for the interaction of transcription factors GATA-1 and PU.1. J. Theor. Biol., 241, 852-865.
-
(2006)
J. Theor. Biol.
, vol.241
, pp. 852-865
-
-
Roeder, I.1
Glauche, I.2
-
48
-
-
84864008966
-
Gene Expression Commons: An open platform for absolute gene expression profiling
-
Seita, J. et al. (2012) Gene Expression Commons: An open platform for absolute gene expression profiling. PLoS One, 7, e40321.
-
(2012)
PLoS One
, vol.7
-
-
Seita, J.1
-
49
-
-
0032190631
-
A transcription factor party during blood cell differentiation
-
Sieweke, M.H. and Graf, T. (1998) A transcription factor party during blood cell differentiation. Curr. Opin. Genet. Dev., 8, 545-551.
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 545-551
-
-
Sieweke, M.H.1
Graf, T.2
-
50
-
-
38449100969
-
A gene regulatory network subcircuit drives a dynamic pattern of gene expression
-
Smith, J. et al. (2007) A gene regulatory network subcircuit drives a dynamic pattern of gene expression. Science, 318, 794-797.
-
(2007)
Science
, vol.318
, pp. 794-797
-
-
Smith, J.1
-
51
-
-
70349728484
-
A recurrent network involving the transcription factors PU.1 and Gfi1 orchestrates innate and adaptive immune cell fates
-
Spooner, C.J. et al. (2009) A recurrent network involving the transcription factors PU.1 and Gfi1 orchestrates innate and adaptive immune cell fates. Immunity, 31, 576-586.
-
(2009)
Immunity
, vol.31
, pp. 576-586
-
-
Spooner, C.J.1
-
52
-
-
0021280294
-
Lineage switch in acute leukemia
-
Stass, S. et al. (1984) Lineage switch in acute leukemia. Blood, 64, 701-706.
-
(1984)
Blood
, vol.64
, pp. 701-706
-
-
Stass, S.1
-
53
-
-
33745000256
-
Genetic regulatory networks programming hematopoietic stem cells and erythroid lineage specification
-
Swiers, G. et al. (2006) Genetic regulatory networks programming hematopoietic stem cells and erythroid lineage specification. Dev. Biol., 294, 525-540.
-
(2006)
Dev. Biol.
, vol.294
, pp. 525-540
-
-
Swiers, G.1
-
54
-
-
0025948178
-
Regulatory networks seen as asynchronous automata: A logical description
-
Thomas, R. (1991) Regulatory networks seen as asynchronous automata: A logical description. J. Theor. Biol., 153, 1-23.
-
(1991)
J. Theor. Biol.
, vol.153
, pp. 1-23
-
-
Thomas, R.1
-
55
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks-I Biological role of feedback loops and practical use of the concept of the loopcharacteristic state
-
Thomas, R. et al. (1995) Dynamical behaviour of biological regulatory networks-I. Biological role of feedback loops and practical use of the concept of the loopcharacteristic state. Bull. Math. Biol., 57, 247-276.
-
(1995)
Bull. Math. Biol.
, vol.57
, pp. 247-276
-
-
Thomas, R.1
-
56
-
-
79959825899
-
ERG promotes T-acute lymphoblastic leukemia and is transcriptionally regulated in leukemic cells by a stem cell enhancer
-
Thoms, J.A. et al. (2011) ERG promotes T-acute lymphoblastic leukemia and is transcriptionally regulated in leukemic cells by a stem cell enhancer. Blood, 117, 7079-7089.
-
(2011)
Blood
, vol.117
, pp. 7079-7089
-
-
Thoms, J.A.1
-
57
-
-
63849118537
-
High GATA-2 expression inhibits human hematopoietic stem and progenitor cell function by effects on cell cycle
-
Tipping, A.J. et al. (2009) High GATA-2 expression inhibits human hematopoietic stem and progenitor cell function by effects on cell cycle. Blood, 113, 2661-2672.
-
(2009)
Blood
, vol.113
, pp. 2661-2672
-
-
Tipping, A.J.1
-
58
-
-
0029120629
-
Immunophenotypic changes between diagnosis and relapse in childhood acute lymphoblastic leukemia
-
van Wering, E.R. et al. (1995) Immunophenotypic changes between diagnosis and relapse in childhood acute lymphoblastic leukemia. Leukemia, 9, 1523-1533.
-
(1995)
Leukemia
, vol.9
, pp. 1523-1533
-
-
Van Wering, E.R.1
-
59
-
-
0032789064
-
Different sequence requirements for expression in erythroid and megakaryocytic cells within a regulatory element upstream of the GATA-1 gene
-
Vyas, P. et al. (1999) Different sequence requirements for expression in erythroid and megakaryocytic cells within a regulatory element upstream of the GATA-1 gene. Development, 126, 2799-2811.
-
(1999)
Development
, vol.126
, pp. 2799-2811
-
-
Vyas, P.1
-
60
-
-
33845218548
-
Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR
-
Warren, L. et al. (2006) Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR. Proc. Natl Acad. Sci. USA, 103, 17807-17812.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 17807-17812
-
-
Warren, L.1
-
61
-
-
67049108075
-
The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development
-
Wilson, N.K. et al. (2009) The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. Blood, 113, 5456-5465.
-
(2009)
Blood
, vol.113
, pp. 5456-5465
-
-
Wilson, N.K.1
-
62
-
-
80054832679
-
Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes
-
Wong, P. et al. (2011) Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes. Blood, 118, e128-138.
-
(2011)
Blood
, vol.118
-
-
Wong, P.1
|