메뉴 건너뛰기




Volumn 10, Issue 4, 2015, Pages

A mass spectrometric-derived cell surface protein atlas

(20)  Bausch Fluck, Damaris a   Hofmann, Andreas a,k   Bock, Thomas a,l   Frei, Andreas P a,m   Cerciello, Ferdinando a,b,n   Jacobs, Andrea a,i   Moest, Hansjoerg a,k   Omasits, Ulrich a   Gundry, Rebekah L c   Yoon, Charles d   Schiess, Ralph a,o   Schmidt, Alexander a,p   Mirkowska, Paulina a,e   Härtlová, Anetta f,q   Van Eyk, Jennifer E g,r   Bourquin, Jean Pierre e   Aebersold, Ruedi a,h,i   Boheler, Kenneth R g,j   Zandstra, Peter d   Wollscheid, Bernd a  


Author keywords

[No Author keywords available]

Indexed keywords

CELL SURFACE PROTEIN; GUANINE NUCLEOTIDE BINDING PROTEIN; PROTEIN TYROSINE KINASE; SURFACEOME; UNCLASSIFIED DRUG; MEMBRANE PROTEIN;

EID: 84928746968     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0121314     Document Type: Article
Times cited : (304)

References (70)
  • 2
    • 0033612280 scopus 로고    scopus 로고
    • The definition of cell type
    • PMID: 10347098
    • Schwartz SM (1999) The definition of cell type. Circ Res 84: 1234-1235. PMID: 10347098
    • (1999) Circ Res , vol.84 , pp. 1234-1235
    • Schwartz, S.M.1
  • 3
    • 77951637328 scopus 로고    scopus 로고
    • Isolation of cell surface proteins for mass spectrometry-based proteomics
    • PMID: 20121483
    • Elschenbroich S, Kim Y, Medin JA, Kislinger T (2010) Isolation of cell surface proteins for mass spectrometry-based proteomics. Expert review of proteomics 7: 141-154. doi: 10.1586/epr.09.97 PMID: 20121483
    • (2010) Expert Review of Proteomics , vol.7 , pp. 141-154
    • Elschenbroich, S.1    Kim, Y.2    Medin, J.A.3    Kislinger, T.4
  • 6
    • 79956322553 scopus 로고    scopus 로고
    • Global quantification of mammalian gene expression control
    • PMID: 21593866
    • Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342. doi: 10.1038/nature10098 PMID: 21593866
    • (2011) Nature , vol.473 , pp. 337-342
    • Schwanhausser, B.1    Busse, D.2    Li, N.3    Dittmar, G.4    Schuchhardt, J.5
  • 7
    • 35848949043 scopus 로고    scopus 로고
    • Decoding protein modifications using top-down mass spectrometry
    • PMID: 17901871
    • Siuti N, Kelleher NL (2007) Decoding protein modifications using top-down mass spectrometry. Nature methods 4: 817-821. PMID: 17901871
    • (2007) Nature Methods , vol.4 , pp. 817-821
    • Siuti, N.1    Kelleher, N.L.2
  • 8
    • 84862783555 scopus 로고    scopus 로고
    • A benchmarked protein microarray-based platform for the identification of novel low-affinity extracellular protein interactions
    • PMID: 22342946
    • Sun Y, Gallagher-Jones M, Barker C, Wright GJ (2012) A benchmarked protein microarray-based platform for the identification of novel low-affinity extracellular protein interactions. Analytical biochemistry 424: 45-53. doi: 10.1016/j.ab.2012.01.034 PMID: 22342946
    • (2012) Analytical Biochemistry , vol.424 , pp. 45-53
    • Sun, Y.1    Gallagher-Jones, M.2    Barker, C.3    Wright, G.J.4
  • 9
    • 33947690177 scopus 로고    scopus 로고
    • Medical applications of leukocyte surface molecules - The CD molecules
    • PMID: 17380197
    • Zola H (2006) Medical applications of leukocyte surface molecules - the CD molecules. Mol Med 12: 312-316. PMID: 17380197
    • (2006) Mol Med , vol.12 , pp. 312-316
    • Zola, H.1
  • 11
    • 46749104456 scopus 로고    scopus 로고
    • A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface
    • PMID: 19526049
    • Gundry RL, Boheler KR, Van Eyk JE, Wollscheid B (2008) A novel role for proteomics in the discovery of cell-surface markers on stem cells: Scratching the surface. Proteomics Clinical applications 2: 892-903. PMID: 19526049
    • (2008) Proteomics Clinical Applications , vol.2 , pp. 892-903
    • Gundry, R.L.1    Boheler, K.R.2    Van Eyk, J.E.3    Wollscheid, B.4
  • 12
    • 57649146492 scopus 로고    scopus 로고
    • Stem cell markers: Insights from membrane proteomics?
    • PMID: 19016515
    • Ahn SM, Goode RJ, Simpson RJ (2008) Stem cell markers: insights from membrane proteomics? Proteomics 8: 4946-4957. doi: 10.1002/pmic.200800312 PMID: 19016515
    • (2008) Proteomics , vol.8 , pp. 4946-4957
    • Ahn, S.M.1    Goode, R.J.2    Simpson, R.J.3
  • 13
    • 0031957306 scopus 로고    scopus 로고
    • Rituximab: A new therapeutic monoclonal antibody for non-Hodgkin's lymphoma
    • PMID: 9652253
    • Scott SD (1998) Rituximab: a new therapeutic monoclonal antibody for non-Hodgkin's lymphoma. Cancer practice 6: 195-197. PMID: 9652253
    • (1998) Cancer Practice , vol.6 , pp. 195-197
    • Scott, S.D.1
  • 14
    • 0032823487 scopus 로고    scopus 로고
    • Phase II study of weekly intravenous trastuzumab (Herceptin) in patients with HER2/neu-overexpressing metastatic breast cancer
    • PMID: 10482197
    • Baselga J, Tripathy D, Mendelsohn J, Baughman S, Benz CC, et al. (1999) Phase II study of weekly intravenous trastuzumab (Herceptin) in patients with HER2/neu-overexpressing metastatic breast cancer. Seminars in oncology 26: 78-83. PMID: 10482197
    • (1999) Seminars in Oncology , vol.26 , pp. 78-83
    • Baselga, J.1    Tripathy, D.2    Mendelsohn, J.3    Baughman, S.4    Benz, C.C.5
  • 15
  • 16
    • 68849103521 scopus 로고    scopus 로고
    • Mass cytometry: Technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry
    • PMID: 19601617
    • Bandura DR, Baranov VI, Ornatsky OI, Antonov A, Kinach R, et al. (2009) Mass cytometry: technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry. Analytical Chemistry 81: 6813-6822. doi: 10.1021/ac901049w PMID: 19601617
    • (2009) Analytical Chemistry , vol.81 , pp. 6813-6822
    • Bandura, D.R.1    Baranov, V.I.2    Ornatsky, O.I.3    Antonov, A.4    Kinach, R.5
  • 17
    • 78650034777 scopus 로고    scopus 로고
    • Towards a knowledge-based Human Protein Atlas
    • PMID: 21139605
    • Uhlen M, Oksvold P, Fagerberg L, Lundberg E, Jonasson K, et al. (2010) Towards a knowledge-based Human Protein Atlas. Nat Biotechnol 28: 1248-1250. doi: 10.1038/nbt1210-1248 PMID: 21139605
    • (2010) Nat Biotechnol , vol.28 , pp. 1248-1250
    • Uhlen, M.1    Oksvold, P.2    Fagerberg, L.3    Lundberg, E.4    Jonasson, K.5
  • 18
    • 20844454202 scopus 로고    scopus 로고
    • Determination of relative protein abundance by internally normalized ratio algorithm with antibody arrays
    • PMID: 15952723
    • Andersson O, Kozlowski M, Garachtchenko T, Nikoloff C, Lew N, et al. (2005) Determination of relative protein abundance by internally normalized ratio algorithm with antibody arrays. Journal of proteome research 4: 758-767. PMID: 15952723
    • (2005) Journal of Proteome Research , vol.4 , pp. 758-767
    • Andersson, O.1    Kozlowski, M.2    Garachtchenko, T.3    Nikoloff, C.4    Lew, N.5
  • 20
    • 58149202157 scopus 로고    scopus 로고
    • Human Proteinpedia: A unified discovery resource for proteomics research
    • PMID: 18948298
    • Kandasamy K, Keerthikumar S, Goel R, Mathivanan S, Patankar N, et al. (2009) Human Proteinpedia: a unified discovery resource for proteomics research. Nucleic Acids Res 37: D773-781. doi: 10.1093/nar/gkn701 PMID: 18948298
    • (2009) Nucleic Acids Res , vol.37 , pp. D773-D781
    • Kandasamy, K.1    Keerthikumar, S.2    Goel, R.3    Mathivanan, S.4    Patankar, N.5
  • 21
    • 84901611036 scopus 로고    scopus 로고
    • Mass-spectrometry-based draft of the human proteome
    • PMID: 24870543
    • Wilhelm M, Schlegl J, Hahne H, Moghaddas Gholami A, Lieberenz M, et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature 509: 582-587. doi: 10.1038/nature13319 PMID: 24870543
    • (2014) Nature , vol.509 , pp. 582-587
    • Wilhelm, M.1    Schlegl, J.2    Hahne, H.3    Moghaddas Gholami, A.4    Lieberenz, M.5
  • 22
    • 84901599553 scopus 로고    scopus 로고
    • A draft map of the human proteome
    • PMID: 24870542
    • Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, et al. (2014) A draft map of the human proteome. Nature 509: 575-581. doi: 10.1038/nature13302 PMID: 24870542
    • (2014) Nature , vol.509 , pp. 575-581
    • Kim, M.S.1    Pinto, S.M.2    Getnet, D.3    Nirujogi, R.S.4    Manda, S.S.5
  • 24
    • 51649083519 scopus 로고    scopus 로고
    • Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells
    • PMID: 18489135
    • Dormeyer W, van Hoof D, Braam SR, Heck AJ, Mummery CL, et al. (2008) Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells. Journal of proteome research 7: 2936-2951. doi: 10.1021/pr800056j PMID: 18489135
    • (2008) Journal of Proteome Research , vol.7 , pp. 2936-2951
    • Dormeyer, W.1    Van Hoof, D.2    Braam, S.R.3    Heck, A.J.4    Mummery, C.L.5
  • 25
    • 67651056213 scopus 로고    scopus 로고
    • Platelet membrane proteomics: A novel repository for functional research
    • PMID: 19436052
    • Lewandrowski U, Wortelkamp S, Lohrig K, Zahedi RP, Wolters DA, et al. (2009) Platelet membrane proteomics: a novel repository for functional research. Blood 114: e10-19. doi: 10.1182/blood-2009-02-203828 PMID: 19436052
    • (2009) Blood , vol.114 , pp. e10-e19
    • Lewandrowski, U.1    Wortelkamp, S.2    Lohrig, K.3    Zahedi, R.P.4    Wolters, D.A.5
  • 26
    • 84891773596 scopus 로고    scopus 로고
    • N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes
    • PMID: 24190977
    • Deeb SJ, Cox J, Schmidt-Supprian M, Mann M (2014) N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes. Mol Cell Proteomics 13: 240-251. doi: 10.1074/mcp.M113.033977 PMID: 24190977
    • (2014) Mol Cell Proteomics , vol.13 , pp. 240-251
    • Deeb, S.J.1    Cox, J.2    Schmidt-Supprian, M.3    Mann, M.4
  • 27
    • 55549098927 scopus 로고    scopus 로고
    • Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
    • PMID: 18658134
    • Conn EM, Madsen MA, Cravatt BF, Ruf W, Deryugina EI, et al. (2008) Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation. J Biol Chem 283: 26518-26527. doi: 10.1074/jbc.M803337200 PMID: 18658134
    • (2008) J Biol Chem , vol.283 , pp. 26518-26527
    • Conn, E.M.1    Madsen, M.A.2    Cravatt, B.F.3    Ruf, W.4    Deryugina, E.I.5
  • 29
    • 84909991820 scopus 로고    scopus 로고
    • Identification of novel tumor-associated cell surface sialoglycoproteins in human glioblastoma tumors using quantitative proteomics
    • PMID: 25360666
    • Autelitano F, Loyaux D, Roudieres S, Deon C, Guette F, et al. (2014) Identification of novel tumor-associated cell surface sialoglycoproteins in human glioblastoma tumors using quantitative proteomics. PLoS One 9: e110316. doi: 10.1371/journal.pone.0110316 PMID: 25360666
    • (2014) PLoS One , vol.9 , pp. e110316
    • Autelitano, F.1    Loyaux, D.2    Roudieres, S.3    Deon, C.4    Guette, F.5
  • 30
    • 84859846797 scopus 로고    scopus 로고
    • Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells
    • PMID: 22424930
    • Rugg-Gunn PJ, Cox BJ, Lanner F, Sharma P, Ignatchenko V, et al. (2012) Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells. Dev Cell 22: 887-901. doi: 10.1016/j.devcel.2012.01.005 PMID: 22424930
    • (2012) Dev Cell , vol.22 , pp. 887-901
    • Rugg-Gunn, P.J.1    Cox, B.J.2    Lanner, F.3    Sharma, P.4    Ignatchenko, V.5
  • 31
    • 34250664284 scopus 로고    scopus 로고
    • In vivo protein biotinylation and sample preparation for the proteomic identification of organ- and disease-specific antigens accessible from the vasculature
    • PMID: 17406232
    • Roesli C, Neri D, Rybak JN (2006) In vivo protein biotinylation and sample preparation for the proteomic identification of organ- and disease-specific antigens accessible from the vasculature. Nat Protoc 1: 192-199. PMID: 17406232
    • (2006) Nat Protoc , vol.1 , pp. 192-199
    • Roesli, C.1    Neri, D.2    Rybak, J.N.3
  • 32
    • 80655131106 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of the adipocyte plasma membrane
    • PMID: 21928809
    • Prior MJ, Larance M, Lawrence RT, Soul J, Humphrey S, et al. (2011) Quantitative proteomic analysis of the adipocyte plasma membrane. J Proteome Res 10: 4970-4982. doi: 10.1021/pr200446r PMID: 21928809
    • (2011) J Proteome Res , vol.10 , pp. 4970-4982
    • Prior, M.J.1    Larance, M.2    Lawrence, R.T.3    Soul, J.4    Humphrey, S.5
  • 33
    • 79960952981 scopus 로고    scopus 로고
    • Use of colloidal silica-beads for the isolation of cell-surface proteins for mass spectrometry-based proteomics
    • PMID: 21701978
    • Kim Y, Elschenbroich S, Sharma P, Sepiashvili L, Gramolini AO, et al. (2011) Use of colloidal silica-beads for the isolation of cell-surface proteins for mass spectrometry-based proteomics. Methods Mol Biol 748: 227-241. doi: 10.1007/978-1-61779-139-0-16 PMID: 21701978
    • (2011) Methods Mol Biol , vol.748 , pp. 227-241
    • Kim, Y.1    Elschenbroich, S.2    Sharma, P.3    Sepiashvili, L.4    Gramolini, A.O.5
  • 34
    • 34548394602 scopus 로고    scopus 로고
    • Mammalian plasma membrane proteomics
    • PMID: 17654460
    • Josic D, Clifton JG (2007) Mammalian plasma membrane proteomics. Proteomics 7: 3010-3029. PMID: 17654460
    • (2007) Proteomics , vol.7 , pp. 3010-3029
    • Josic, D.1    Clifton, J.G.2
  • 36
    • 77954730167 scopus 로고    scopus 로고
    • Plasma membrane proteomics and its application in clinical cancer biomarker discovery
    • PMID: 20382631
    • Leth-Larsen R, Lund RR, Ditzel HJ (2010) Plasma membrane proteomics and its application in clinical cancer biomarker discovery. Molecular & cellular proteomics: MCP 9: 1369-1382. doi: 10.1074/mcp.R900006-MCP200 PMID: 20382631
    • (2010) Molecular & Cellular Proteomics: MCP , vol.9 , pp. 1369-1382
    • Leth-Larsen, R.1    Lund, R.R.2    Ditzel, H.J.3
  • 37
    • 64349089985 scopus 로고    scopus 로고
    • Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins
    • PMID: 19349973
    • Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, et al. (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat Biotechnol 27: 378-386. doi: 10.1038/nbt.1532 PMID: 19349973
    • (2009) Nat Biotechnol , vol.27 , pp. 378-386
    • Wollscheid, B.1    Bausch-Fluck, D.2    Henderson, C.3    O'Brien, R.4    Bibel, M.5
  • 38
    • 77957690860 scopus 로고    scopus 로고
    • Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells
    • PMID: 20570859
    • Hofmann A, Gerrits B, Schmidt A, Bock T, Bausch-Fluck D, et al. (2010) Proteomic cell surface phenotyping of differentiating acute myeloid leukemia cells. Blood 116: e26-34. doi: 10.1182/blood-2010-02-271270 PMID: 20570859
    • (2010) Blood , vol.116 , pp. e26-e34
    • Hofmann, A.1    Gerrits, B.2    Schmidt, A.3    Bock, T.4    Bausch-Fluck, D.5
  • 39
    • 72149120326 scopus 로고    scopus 로고
    • The mouse C2C12 myoblast cell surface N-linked glycoproteome: Identification, glycosite occupancy, and membrane orientation
    • PMID: 19656770
    • Gundry RL, Raginski K, Tarasova Y, Tchernyshyov I, Bausch-Fluck D, et al. (2009) The mouse C2C12 myoblast cell surface N-linked glycoproteome: identification, glycosite occupancy, and membrane orientation. Mol Cell Proteomics 8: 2555-2569. doi: 10.1074/mcp.M900195-MCP200 PMID: 19656770
    • (2009) Mol Cell Proteomics , vol.8 , pp. 2555-2569
    • Gundry, R.L.1    Raginski, K.2    Tarasova, Y.3    Tchernyshyov, I.4    Bausch-Fluck, D.5
  • 41
    • 84867449353 scopus 로고    scopus 로고
    • Proteomic analysis reveals drug accessible cell surface N-glycoproteins of primary and established glioblastoma cell lines
    • PMID: 22909291
    • Bock T, Moest H, Omasits U, Dolski S, Lundberg E, et al. (2012) Proteomic analysis reveals drug accessible cell surface N-glycoproteins of primary and established glioblastoma cell lines. Journal of proteome research 11: 4885-4893. doi: 10.1021/pr300360a PMID: 22909291
    • (2012) Journal of Proteome Research , vol.11 , pp. 4885-4893
    • Bock, T.1    Moest, H.2    Omasits, U.3    Dolski, S.4    Lundberg, E.5
  • 42
    • 84882290270 scopus 로고    scopus 로고
    • Leukemia surfaceome analysis reveals new disease-associated features
    • PMID: 23649467
    • Mirkowska P, Hofmann A, Sedek L, Slamova L, Mejstrikova E, et al. (2013) Leukemia surfaceome analysis reveals new disease-associated features. Blood 121: e149-159. doi: 10.1182/blood-2012-11-468702 PMID: 23649467
    • (2013) Blood , vol.121 , pp. e149-e159
    • Mirkowska, P.1    Hofmann, A.2    Sedek, L.3    Slamova, L.4    Mejstrikova, E.5
  • 43
    • 84865652325 scopus 로고    scopus 로고
    • Identification and functional characterization of pVHL-dependent cell surface proteins in renal cell carcinoma
    • PMID: 22806541
    • Boysen G, Bausch-Fluck D, Thoma CR, Nowicka AM, Stiehl DP, et al. (2012) Identification and functional characterization of pVHL-dependent cell surface proteins in renal cell carcinoma. Neoplasia 14: 535-546. PMID: 22806541
    • (2012) Neoplasia , vol.14 , pp. 535-546
    • Boysen, G.1    Bausch-Fluck, D.2    Thoma, C.R.3    Nowicka, A.M.4    Stiehl, D.P.5
  • 44
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • PMID: 24226387
    • Eng JK, McCormack AL, Yates JR (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. Journal of the American Society for Mass Spectrometry 5: 976-989. doi: 10.1016/1044-0305(94)80016-2 PMID: 24226387
    • (1994) Journal of the American Society for Mass Spectrometry , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 45
    • 77949676526 scopus 로고    scopus 로고
    • A guided tour of the Trans-Proteomic Pipeline
    • PMID: 20101611
    • Deutsch EW, Mendoza L, Shteynberg D, Farrah T, Lam H, et al. (2010) A guided tour of the Trans-Proteomic Pipeline. Proteomics 10: 1150-1159. doi: 10.1002/pmic.200900375 PMID: 20101611
    • (2010) Proteomics , vol.10 , pp. 1150-1159
    • Deutsch, E.W.1    Mendoza, L.2    Shteynberg, D.3    Farrah, T.4    Lam, H.5
  • 46
    • 53249098366 scopus 로고    scopus 로고
    • Building consensus spectral libraries for peptide identification in proteomics
    • PMID: 18806791
    • Lam H, Deutsch EW, Eddes JS, Eng JK, Stein SE, et al. (2008) Building consensus spectral libraries for peptide identification in proteomics. Nat Methods 5: 873-875. doi: 10.1038/nmeth.1254 PMID: 18806791
    • (2008) Nat Methods , vol.5 , pp. 873-875
    • Lam, H.1    Deutsch, E.W.2    Eddes, J.S.3    Eng, J.K.4    Stein, S.E.5
  • 47
    • 84894258646 scopus 로고    scopus 로고
    • Protter: Interactive protein feature visualization and integration with experimental proteomic data
    • Omasits U, C HA, Muller S, Wollscheid B (2013) Protter: interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics.
    • (2013) Bioinformatics
    • Omasits, U.1    C, H.A.2    Muller, S.3    Wollscheid, B.4
  • 48
    • 0029003984 scopus 로고
    • Cloning of immunoglobulin-superfamily members associated with HLA-C and HLA-B recognition by human natural killer cells
    • PMID: 7716543
    • Colonna M, Samaridis J (1995) Cloning of immunoglobulin-superfamily members associated with HLA-C and HLA-B recognition by human natural killer cells. Science 268: 405-408. PMID: 7716543
    • (1995) Science , vol.268 , pp. 405-408
    • Colonna, M.1    Samaridis, J.2
  • 49
    • 0019981972 scopus 로고
    • Production of a monoclonal antibody specific for Hodgkin and Sternberg-Reed cells of Hodgkin's disease and a subset of normal lymphoid cells
    • PMID: 7110326
    • Schwab U, Stein H, Gerdes J, Lemke H, Kirchner H, et al. (1982) Production of a monoclonal antibody specific for Hodgkin and Sternberg-Reed cells of Hodgkin's disease and a subset of normal lymphoid cells. Nature 299: 65-67. PMID: 7110326
    • (1982) Nature , vol.299 , pp. 65-67
    • Schwab, U.1    Stein, H.2    Gerdes, J.3    Lemke, H.4    Kirchner, H.5
  • 50
    • 0025099277 scopus 로고
    • Central nervous system antigen P84 can serve as a substrate for neurite outgrowth
    • PMID: 2303162
    • Chuang W, Lagenaur CF (1990) Central nervous system antigen P84 can serve as a substrate for neurite outgrowth. Developmental biology 137: 219-232. PMID: 2303162
    • (1990) Developmental Biology , vol.137 , pp. 219-232
    • Chuang, W.1    Lagenaur, C.F.2
  • 51
    • 80755142726 scopus 로고    scopus 로고
    • SIRPA is a specific cell-surface marker for isolating cardiomyocytes derived from human pluripotent stem cells
    • PMID: 22020386
    • Dubois NC, Craft AM, Sharma P, Elliott DA, Stanley EG, et al. (2011) SIRPA is a specific cell-surface marker for isolating cardiomyocytes derived from human pluripotent stem cells. Nature biotechnology 29: 1011-1018. doi: 10.1038/nbt.2005 PMID: 22020386
    • (2011) Nature Biotechnology , vol.29 , pp. 1011-1018
    • Dubois, N.C.1    Craft, A.M.2    Sharma, P.3    Elliott, D.A.4    Stanley, E.G.5
  • 52
    • 2142657817 scopus 로고    scopus 로고
    • A combined transmembrane topology and signal peptide prediction method
    • PMID: 15111065
    • Kall L, Krogh A, Sonnhammer EL (2004) A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338: 1027-1036. PMID: 15111065
    • (2004) J Mol Biol , vol.338 , pp. 1027-1036
    • Kall, L.1    Krogh, A.2    Sonnhammer, E.L.3
  • 53
    • 0036132818 scopus 로고    scopus 로고
    • Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies
    • PMID: 11808871
    • Ikeda M, Arai M, Lao DM, Shimizu T (2002) Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies. In silico biology 2: 19-33. PMID: 11808871
    • (2002) Silico Biology , vol.2 , pp. 19-33
    • Ikeda, M.1    Arai, M.2    Lao, D.M.3    Shimizu, T.4
  • 55
    • 35348863892 scopus 로고    scopus 로고
    • High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
    • PMID: 17644760
    • Stahl-Zeng J, Lange V, Ossola R, Eckhardt K, Krek W, et al. (2007) High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol Cell Proteomics 6: 1809-1817. PMID: 17644760
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1809-1817
    • Stahl-Zeng, J.1    Lange, V.2    Ossola, R.3    Eckhardt, K.4    Krek, W.5
  • 56
    • 74049131716 scopus 로고    scopus 로고
    • High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
    • PMID: 19966807
    • Picotti P, Rinner O, Stallmach R, Dautel F, Farrah T, et al. (2010) High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nature methods 7: 43-46. doi: 10.1038/nmeth.1408 PMID: 19966807
    • (2010) Nature Methods , vol.7 , pp. 43-46
    • Picotti, P.1    Rinner, O.2    Stallmach, R.3    Dautel, F.4    Farrah, T.5
  • 57
    • 44149105911 scopus 로고    scopus 로고
    • PHOSIDA (phosphorylation site database): Management, structural and evolutionary investigation, and prediction of phosphosites
    • PMID: 18039369
    • Gnad F, Ren S, Cox J, Olsen JV, Macek B, et al. (2007) PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome biology 8: R250. PMID: 18039369
    • (2007) Genome Biology , vol.8 , pp. R250
    • Gnad, F.1    Ren, S.2    Cox, J.3    Olsen, J.V.4    Macek, B.5
  • 58
    • 57449105428 scopus 로고    scopus 로고
    • PhosphoPep - A database of protein phosphorylation sites in model organisms
    • PMID: 19060867
    • Bodenmiller B, Campbell D, Gerrits B, Lam H, Jovanovic M, et al. (2008) PhosphoPep - a database of protein phosphorylation sites in model organisms. Nature biotechnology 26: 1339-1340. doi: 10.1038/nbt1208-1339 PMID: 19060867
    • (2008) Nature Biotechnology , vol.26 , pp. 1339-1340
    • Bodenmiller, B.1    Campbell, D.2    Gerrits, B.3    Lam, H.4    Jovanovic, M.5
  • 59
    • 2942598149 scopus 로고    scopus 로고
    • PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation
    • PMID: 15174125
    • Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B (2004) PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics 4: 1551-1561. PMID: 15174125
    • (2004) Proteomics , vol.4 , pp. 1551-1561
    • Hornbeck, P.V.1    Chabra, I.2    Kornhauser, J.M.3    Skrzypek, E.4    Zhang, B.5
  • 60
    • 84904193177 scopus 로고    scopus 로고
    • A Human Pluripotent Stem Cell Surface N-Glycoproteome Resource Reveals Markers, Extracellular Epitopes, and Drug Targets
    • Boheler KR, Bhattacharya S, Kropp EM, Chuppa S, Riordon DR, et al. (2014) A Human Pluripotent Stem Cell Surface N-Glycoproteome Resource Reveals Markers, Extracellular Epitopes, and Drug Targets. Stem cell reports.
    • (2014) Stem Cell Reports
    • Boheler, K.R.1    Bhattacharya, S.2    Kropp, E.M.3    Chuppa, S.4    Riordon, D.R.5
  • 61
    • 84877026476 scopus 로고    scopus 로고
    • Malfunctioning of adipocytes in obesity is linked to quantitative surfaceome changes
    • PMID: 24046861
    • Moest H, Frei AP, Bhattacharya I, Geiger M, Wollscheid B, et al. (2013) Malfunctioning of adipocytes in obesity is linked to quantitative surfaceome changes. Biochimica et biophysica acta 1831: 1208-1216. PMID: 24046861
    • (2013) Biochimica et Biophysica Acta , vol.1831 , pp. 1208-1216
    • Moest, H.1    Frei, A.P.2    Bhattacharya, I.3    Geiger, M.4    Wollscheid, B.5
  • 62
    • 84890846323 scopus 로고    scopus 로고
    • Intratumoral IL-12 combined with CTLA-4 blockade elicits T cell-mediated glioma rejection
    • PMID: 24277150
    • Vom Berg J, Vrohlings M, Haller S, Haimovici A, Kulig P, et al. (2013) Intratumoral IL-12 combined with CTLA-4 blockade elicits T cell-mediated glioma rejection. J Exp Med 210: 2803-2811. doi: 10.1084/jem.20130678 PMID: 24277150
    • (2013) J Exp Med , vol.210 , pp. 2803-2811
    • Vom Berg, J.1    Vrohlings, M.2    Haller, S.3    Haimovici, A.4    Kulig, P.5
  • 63
    • 77955841899 scopus 로고    scopus 로고
    • A novel classification of quiescent and transit amplifying adult neural stem cells by surface and metabolic markers permits a defined simultaneous isolation
    • PMID: 20538535
    • Obermair FJ, Fiorelli R, Schroeter A, Beyeler S, Blatti C, et al. (2010) A novel classification of quiescent and transit amplifying adult neural stem cells by surface and metabolic markers permits a defined simultaneous isolation. Stem Cell Res 5: 131-143. doi: 10.1016/j.scr.2010.05.001 PMID: 20538535
    • (2010) Stem Cell Res , vol.5 , pp. 131-143
    • Obermair, F.J.1    Fiorelli, R.2    Schroeter, A.3    Beyeler, S.4    Blatti, C.5
  • 64
    • 84866137172 scopus 로고    scopus 로고
    • The stalk domain and the glycosylation status of the activating natural killer cell receptor NKp30 are important for ligand binding
    • PMID: 22807449
    • Hartmann J, Tran TV, Kaudeer J, Oberle K, Herrmann J, et al. (2012) The stalk domain and the glycosylation status of the activating natural killer cell receptor NKp30 are important for ligand binding. J Biol Chem 287: 31527-31539. doi: 10.1074/jbc.M111.304238 PMID: 22807449
    • (2012) J Biol Chem , vol.287 , pp. 31527-31539
    • Hartmann, J.1    Tran, T.V.2    Kaudeer, J.3    Oberle, K.4    Herrmann, J.5
  • 65
    • 84874762979 scopus 로고    scopus 로고
    • The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013
    • PMID: 23203882
    • Vizcaino JA, Cote RG, Csordas A, Dianes JA, Fabregat A, et al. (2013) The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013. Nucleic acids research 41: D1063-1069. doi: 10.1093/nar/gks1262 PMID: 23203882
    • (2013) Nucleic Acids Research , vol.41 , pp. D1063-D1069
    • Vizcaino, J.A.1    Cote, R.G.2    Csordas, A.3    Dianes, J.A.4    Fabregat, A.5
  • 66
    • 77953240454 scopus 로고    scopus 로고
    • Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints
    • PMID: 20510933
    • Zielinska DF, Gnad F, Wisniewski JR, Mann M (2010) Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints. Cell 141: 897-907. doi: 10.1016/j.cell.2010.04.012 PMID: 20510933
    • (2010) Cell , vol.141 , pp. 897-907
    • Zielinska, D.F.1    Gnad, F.2    Wisniewski, J.R.3    Mann, M.4
  • 67
    • 33746930864 scopus 로고    scopus 로고
    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats
    • 2005 PMID: 16729052
    • Keller A, Eng J, Zhang N, Li XJ, Aebersold R (2005) A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Molecular systems biology 1: 2005 0017. PMID: 16729052
    • (2005) Molecular Systems Biology , vol.1 , pp. 0017
    • Keller, A.1    Eng, J.2    Zhang, N.3    Li, X.J.4    Aebersold, R.5
  • 68
    • 70449433751 scopus 로고    scopus 로고
    • Protein quantification in label-free LC-MS experiments
    • PMID: 19891509
    • Clough T, Key M, Ott I, Ragg S, Schadow G, et al. (2009) Protein quantification in label-free LC-MS experiments. J Proteome Res 8: 5275-5284. doi: 10.1021/pr900610q PMID: 19891509
    • (2009) J Proteome Res , vol.8 , pp. 5275-5284
    • Clough, T.1    Key, M.2    Ott, I.3    Ragg, S.4    Schadow, G.5
  • 69
    • 0141742293 scopus 로고    scopus 로고
    • PANTHER: A library of protein families and subfamilies indexed by function
    • PMID: 12952881
    • Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, et al. (2003) PANTHER: a library of protein families and subfamilies indexed by function. Genome research 13: 2129-2141. PMID: 12952881
    • (2003) Genome Research , vol.13 , pp. 2129-2141
    • Thomas, P.D.1    Campbell, M.J.2    Kejariwal, A.3    Mi, H.4    Karlak, B.5
  • 70
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
    • PMID: 20147306
    • MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, et al. (2010) Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26: 966-968. doi: 10.1093/bioinformatics/btq054 PMID: 20147306
    • (2010) Bioinformatics , vol.26 , pp. 966-968
    • MacLean, B.1    Tomazela, D.M.2    Shulman, N.3    Chambers, M.4    Finney, G.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.