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Volumn 106, Issue 39, 2009, Pages 16752-16757

Bioinformatics construction of the human cell surfaceome

Author keywords

Colorectal tumors; CT antigens; Glioblastoma; Transmembrane; Tumor cell surface antigens

Indexed keywords

CELL SURFACE PROTEIN; MEMBRANE PROTEIN;

EID: 70349744048     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0907939106     Document Type: Article
Times cited : (109)

References (40)
  • 1
    • 0024344834 scopus 로고
    • Immunogenetics of human cell surface differentiation
    • Rettig WJ, Old LJ (1989) Immunogenetics of human cell surface differentiation. Annu Rev Immunol 7:481-511. (Pubitemid 19138021)
    • (1989) Annual Review of Immunology , vol.7 , pp. 481-511
    • Rettig, W.J.1    Old, L.J.2
  • 2
    • 10744220468 scopus 로고    scopus 로고
    • The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: A bioinformatics assessment
    • Clark HF, et al. (2003) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: A bioinformatics assessment. Genome Res 13:2265-2270.
    • (2003) Genome Res , vol.13 , pp. 2265-2270
    • Clark, H.F.1
  • 4
    • 38549146894 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Finn RD, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36:D281-D288.
    • (2008) Nucleic Acids Res , vol.36
    • Finn, R.D.1
  • 5
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • DOI 10.1006/jmbi.2000.4315
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J Mol Biol 305:567-580. (Pubitemid 33032862)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 6
    • 33646466927 scopus 로고    scopus 로고
    • Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units
    • Davis MJ, et al. (2006) Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units. PLoS Genet 2:e46.
    • (2006) PLoS Genet , vol.2
    • Davis, M.J.1
  • 7
    • 22244475458 scopus 로고    scopus 로고
    • An atlas of human gene expression from massively parallel signature sequencing (MPSS)
    • Jongeneel CV, et al. (2005) An atlas of human gene expression from massively parallel signature sequencing (MPSS). Genome Res 15:1007-1014.
    • (2005) Genome Res , vol.15 , pp. 1007-1014
    • Jongeneel, C.V.1
  • 8
    • 23144464171 scopus 로고    scopus 로고
    • Cancer/testis antigens, gametogenesis and cancer
    • Simpson AJ, et al. (2005) Cancer/testis antigens, gametogenesis and cancer. Nat Rev Cancer 5:615-625.
    • (2005) Nat Rev Cancer , vol.5 , pp. 615-625
    • Simpson, A.J.1
  • 11
    • 50349085911 scopus 로고    scopus 로고
    • Effect of SLCO1B3 haplotype on testosterone transport and clinical outcome in caucasian patients with androgen-independent prostatic cancer
    • Hamada A, et al. (2008) Effect of SLCO1B3 haplotype on testosterone transport and clinical outcome in caucasian patients with androgen-independent prostatic cancer. Clin Cancer Res 14:3312-3318.
    • (2008) Clin Cancer Res , vol.14 , pp. 3312-3318
    • Hamada, A.1
  • 15
    • 33947517650 scopus 로고    scopus 로고
    • Sonic hedgehog inversely regulates the expression of angiopoietin-1 and angiopoietin-2 in fibroblasts
    • Lee SW, Moskowitz MA, Sims JR (2007) Sonic hedgehog inversely regulates the expression of angiopoietin-1 and angiopoietin-2 in fibroblasts. Int J Mol Med 19:445-451.
    • (2007) Int J Mol Med , vol.19 , pp. 445-451
    • Lee, S.W.1    Moskowitz, M.A.2    Sims, J.R.3
  • 16
    • 33644509505 scopus 로고    scopus 로고
    • Patched1 functions as a gatekeeper by promoting cell cycle progression
    • DOI 10.1158/0008-5472.CAN-05-2146
    • Adolphe C, Hetherington R, Ellis T, Wainwright B (2006) Patched1 functions as a gatekeeper by promoting cell cycle progression. Cancer Res 66:2081-2088. (Pubitemid 43294917)
    • (2006) Cancer Research , vol.66 , Issue.4 , pp. 2081-2088
    • Adolphe, C.1    Hetherington, R.2    Ellis, T.3    Wainwright, B.4
  • 19
    • 39749154101 scopus 로고    scopus 로고
    • Identification of Trop-2 as an oncogene and an attractive therapeutic target in colon cancers
    • DOI 10.1158/1535-7163.MCT-07-2003
    • Wang J, et al. (2008) Identification of Trop-2 as an oncogene and an attractive therapeutic target in colon cancers. Mol Cancer Ther 7:280-285. (Pubitemid 351302522)
    • (2008) Molecular Cancer Therapeutics , vol.7 , Issue.2 , pp. 280-285
    • Wang, J.1    Day, R.2    Dong, Y.3    Weintraub, S.J.4    Michel, L.5
  • 20
    • 54249114979 scopus 로고    scopus 로고
    • A bicistronic CYCLIN D1-TROP2 mRNA chimera demonstrates a novel oncogenic mechanism in human cancer
    • Guerra E, et al. (2008) A bicistronic CYCLIN D1-TROP2 mRNA chimera demonstrates a novel oncogenic mechanism in human cancer. Cancer Res 68:8113-8121.
    • (2008) Cancer Res , vol.68 , pp. 8113-8121
    • Guerra, E.1
  • 21
    • 0026469991 scopus 로고
    • Identification of endosialin, a cell surface glycoprotein of vascular endothelial cells in human cancer
    • Rettig WJ, et al. (1992) Identification of endosialin, a cell surface glycoprotein of vascular endothelial cells in human cancer. Proc Natl Acad Sci USA 89:10832-10836.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10832-10836
    • Rettig, W.J.1
  • 22
    • 0034682892 scopus 로고    scopus 로고
    • Genes expressed in human tumor endothelium
    • St CB, et al. (2000) Genes expressed in human tumor endothelium. Science 289:1197-1202.
    • (2000) Science , vol.289 , pp. 1197-1202
    • St, C.B.1
  • 24
    • 4544384011 scopus 로고    scopus 로고
    • Insulin-like growth factor 1 stimulates KCl cotransport, which is necessary for invasion and proliferation of cervical cancer and ovarian cancer cells
    • Shen MR, et al. (2004) Insulin-like growth factor 1 stimulates KCl cotransport, which is necessary for invasion and proliferation of cervical cancer and ovarian cancer cells. J Biol Chem 279:40017-40025.
    • (2004) J Biol Chem , vol.279 , pp. 40017-40025
    • Shen, M.R.1
  • 25
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • Cancer Genome Atlas Research Network
    • Cancer Genome Atlas Research Network (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455:1061-1068.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 27
    • 0034599961 scopus 로고    scopus 로고
    • Requirement of tumor necrosis factor receptor-associated factor (TRAF)6 in interleukin 17 signal transduction
    • DOI 10.1084/jem.191.7.1233
    • Schwandner R, Yamaguchi K, Cao Z (2000) Requirement of tumor necrosis factor receptor-associated factor (TRAF)6 in interleukin 17 signal transduction. J Exp Med 191:1233-1240. (Pubitemid 30207685)
    • (2000) Journal of Experimental Medicine , vol.191 , Issue.7 , pp. 1233-1239
    • Schwandner, R.1    Yamaguchi, K.2    Cao, Z.3
  • 28
    • 54749113690 scopus 로고    scopus 로고
    • Growth inhibition and radiosensitization of glioblastoma and lung cancer cells by small interfering RNA silencing of tumor necrosis factor receptor-associated factor 2
    • Zheng M, et al. (2008) Growth inhibition and radiosensitization of glioblastoma and lung cancer cells by small interfering RNA silencing of tumor necrosis factor receptor-associated factor 2. Cancer Res 68:7570-7578.
    • (2008) Cancer Res , vol.68 , pp. 7570-7578
    • Zheng, M.1
  • 29
    • 34548076607 scopus 로고    scopus 로고
    • Interferon-gamma regulation of TNFalpha-induced matrix metalloproteinase 3 expression and migration of human glioma T98G cells
    • Cheng SM, et al. (2007) Interferon-gamma regulation of TNFalpha-induced matrix metalloproteinase 3 expression and migration of human glioma T98G cells. Int J Cancer 121:1190-1196.
    • (2007) Int J Cancer , vol.121 , pp. 1190-1196
    • Cheng, S.M.1
  • 30
    • 0035901090 scopus 로고    scopus 로고
    • Inflammation and cancer: Back to Virchow?
    • DOI 10.1016/S0140-6736(00)04046-0
    • Balkwill F, Mantovani A (2001) Inflammation and cancer: Back to Virchow? Lancet 357:539-545. (Pubitemid 32173595)
    • (2001) Lancet , vol.357 , Issue.9255 , pp. 539-545
    • Balkwill, F.1    Mantovani, A.2
  • 32
    • 0038581051 scopus 로고    scopus 로고
    • TACE cleavage of proamphiregulin regulates GPCR-induced proliferation and motility of cancer cells
    • DOI 10.1093/emboj/cdg231
    • Gschwind A, Hart S, Fischer OM, Ullrich A (2003) TACE cleavage of proamphiregulin regulates GPCR-induced proliferation and motility of cancer cells. EMBO J 22:2411-2421. (Pubitemid 36604980)
    • (2003) EMBO Journal , vol.22 , Issue.10 , pp. 2411-2421
    • Gschwind, A.1    Hart, S.2    Fischer, O.M.3    Ullrich, A.4
  • 33
    • 0035964396 scopus 로고    scopus 로고
    • A monoclonal cytolytic T-lymphocyte response observed in a melanoma patient vaccinated with a tumor-specific antigenic peptide encoded by gene MAGE-3
    • Coulie PG, et al. (2001) A monoclonal cytolytic T-lymphocyte response observed in a melanoma patient vaccinated with a tumor-specific antigenic peptide encoded by gene MAGE-3. Proc Natl Acad Sci USA 98:10290-10295.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 10290-10295
    • Coulie, P.G.1
  • 35
    • 12344334809 scopus 로고    scopus 로고
    • Identification of the gonad-specific anion transporter SLCO6A1 as a cancer/testis (CT) antigen expressed in human lung cancer
    • Lee SY, et al. (2004) Identification of the gonad-specific anion transporter SLCO6A1 as a cancer/testis (CT) antigen expressed in human lung cancer. Cancer Immun 4:13.
    • (2004) Cancer Immun , vol.4 , pp. 13
    • Lee, S.Y.1
  • 36
    • 0344838426 scopus 로고    scopus 로고
    • Immunomic analysis of human sarcoma
    • Lee SY, et al. (2003) Immunomic analysis of human sarcoma. Proc Natl Acad Sci USA 100:2651-2656.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 2651-2656
    • Lee, S.Y.1
  • 38
    • 30844469066 scopus 로고    scopus 로고
    • Glycoprotein A34, a novel target for antibody-based cancer immunotherapy
    • Scanlan MJ, et al. (2006) Glycoprotein A34, a novel target for antibody-based cancer immunotherapy. Cancer Immun 6:2.
    • (2006) Cancer Immun , vol.6 , pp. 2
    • Scanlan, M.J.1
  • 39
    • 1942533477 scopus 로고    scopus 로고
    • Detection and evaluation of intron retention events in the human transcriptome
    • DOI 10.1261/rna.5123504
    • Galante PA, Sakabe NJ, Kirschbaum-Slager N, de Souza SJ (2004) Detection and evaluation of intron retention events in the human transcriptome. RNA 10:757-765. (Pubitemid 38529738)
    • (2004) RNA , vol.10 , Issue.5 , pp. 757-765
    • Galante, P.A.F.1    Sakabe, N.J.2    Kirschbaum-Slager, N.3    De Souza, S.J.4
  • 40
    • 34250212945 scopus 로고    scopus 로고
    • Sense-antisense pairs in mammals: Functional and evolutionary considerations
    • Galante PA, et al. (2007) Sense-antisense pairs in mammals: Functional and evolutionary considerations. Genome Biol 8:R40.
    • (2007) Genome Biol , vol.8
    • Galante, P.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.