The mouse C2C12 myoblast cell surface N-linked glycoproteome: Identification, glycosite occupancy, and membrane orientation

Molecular and Cellular Proteomics

Volumn 8, Issue 11, 2009, Pages 2555-2569

  Gundry, Rebekah L ^a,b   Raginski, Kimberly ^b   Tarasova, Yelena ^a,b   Tchernyshyov, Irina ^a   Bausch Fluck, Damaris ^c   Elliott, Steven T ^a   Boheler, Kenneth R ^b   Van Eyk, Jennifer E ^a   Wollscheid, Bernd ^c  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

AQUAPORIN 1; BETA SARCOGLYCAN; GLYCOPROTEIN;

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CELL MEMBRANE; MOUSE; MYOBLAST; MYOTUBE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN GLYCOSYLATION; PROTEOMICS;

ANIMALS; AQUAPORIN 1; BINDING SITES; CELL DIFFERENTIATION; CELL MEMBRANE; GLYCOPROTEINS; GLYCOSYLATION; MEMBRANE PROTEINS; MICE; MODELS, BIOLOGICAL; MYOBLASTS; PROTEOME; PROTEOMICS; SARCOGLYCANS;

EID: 72149120326     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M900195-MCP200     Document Type: Article

References (120)

1. Chargé, S. B., and Rudnicki, M. A. (2004) Cellular and molecular regulation of muscle regeneration. Physiol. Rev. 84, 209-238
2. Hawke, T. J., and Garry, D. J. (2001) Myogenic satellite cells: physiology to molecular biology. J. Appl. Physiol. 91, 534-551
3. Le Grand, F., and Rudnicki, M. A. (2007) Skeletal muscle satellite cells and adult myogenesis. Curr. Opin. Cell Biol. 19, 628-633
4. Seale, P., and Rudnicki, M. A. (2000) A new look at the origin, function, and "stem-cell" status of muscle satellite cells. Dev. Biol. 218, 115-124
5. Mauro, A. (1961) Satellite cell of skeletal muscle fibers. J. Biophys. Biochem. Cytol. 9, 493-495
6. Bischoff, R. (1990) Interaction between satellite cells and skeletal muscle fibers. Development 109, 943-952 (Pubitemid 20267206)
7. Appell, H. J., Forsberg, S., and Hollmann, W. (1988) Satellite cell activation in human skeletal muscle after training: evidence for muscle fiber neoformation. Int. J. Sports Med. 9, 297-299
8. Horsley, V., and Pavlath, G. K. (2004) Forming a multinucleated cell: molecules that regulate myoblast fusion. Cells Tissues Organs 176, 67-78 (Pubitemid 38199420)
9. Geiger, B., and Ayalon, O. (1992) Cadherins. Annu. Rev. Cell Biol. 8, 307-332
10. Kaufmann, U., Martin, B., Link, D., Witt, K., Zeitler, R., Reinhard, S., and Starzinski-Powitz, A. (1999) M-cadherin and its sisters in development of striated muscle. Cell Tissue Res. 296, 191-198 (Pubitemid 29179386)
11. Redfield, A., Nieman, M. T., and Knudsen, K. A. (1997) Cadherins promote skeletal muscle differentiation in three-dimensional cultures. J. Cell Biol. 138, 1323-1331 (Pubitemid 27415058)
12. Kang, J. S., Yi, M. J., Zhang, W., Feinleib, J. L., Cole, F., and Krauss, R. S. (2004) Netrins and neogenin promote myotube formation. J. Cell Biol. 167, 493-504 (Pubitemid 39489057)
13. Krauss, R. S., Cole, F., Gaio, U., Takaesu, G., Zhang, W., and Kang, J. S. (2005) Close encounters: regulation of vertebrate skeletal myogenesis by cell-cell contact. J. Cell Sci. 118, 2355-2362 (Pubitemid 40873075)
14. Rapizzi, E., Donati, C., Cencetti, F., Nincheri, P., and Bruni, P. (2008) Sphingosine 1-phosphate differentially regulates proliferation of C2C12 reserve cells and myoblasts. Mol. Cell. Biochem. 314, 193-199
15. Meacci, E., Nuti, F., Donati, C., Cencetti, F., Farnararo, M., and Bruni, P. (2008) Sphingosine kinase activity is required for myogenic differentiation of C2C12 myoblasts. J. Cell. Physiol. 214, 210-220
16. Squecco, R., Sassoli, C., Nuti, F., Martinesi, M., Chellini, F., Nosi, D., Zecchi-Oriandini, S., Francini, F., Formigli, L., and Meacci, E. (2006) Sphingosine 1-phosphate induces myoblast differentiation through Cx43 protein expression: a role for a gap junction-dependent and -independent function. Mol. Biol. Cell 17, 4896-4910
17. Donati, C., Meacci, E., Nuti, F., Becciolini, L., Farnararo, M., and Bruni, P. (2005) Sphingosine 1-phosphate regulates myogenic differentiation: a major role for S1P2 receptor. FASEB J. 19, 449-451 (Pubitemid 40316546)
18. Apweiler, R., Hermjakob, H., and Sharon, N. (1999) On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochim. Biophys. Acta 1473, 4-8
19. Gemeiner, P., and Viskupic, E. (1981) Stepwise immobilization of proteins via their glycosylation. J. Biochem. Biophys. Methods 4, 309-319
20. Zhang, H., Yi, E. C., Li, X. J., Mallick, P., Kelly-Spratt, K. S., Masselon, C. D., Camp, D. G., 2nd, Smith, R. D., Kemp, C. J., and Aebersold, R. (2005) High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry. Mol. Cell. Proteomics 4, 144-155
21. Zhang, H., Liu, A. Y., Loriaux, P., Wollscheid, B., Zhou, Y., Watts, J. D., and Aebersold, R. (2007) Mass spectrometric detection of tissue proteins in plasma. Mol. Cell. Proteomics 6, 64-71
22. Liu, T., Qian, W. J., Gritsenko, M. A., Camp, D. G., 2nd, Monroe, M. E., Moore, R. J., and Smith, R. D. (2005) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. J. Proteome Res. 4, 2070-2080
23. Liu, T., Qian, W. J., Gritsenko, M. A., Xiao, W., Moldawer, L. L., Kaushal, A., Monroe, M. E., Vamum, S. M., Moore, R. J., Purvine, S. O., Maier, R. V., Davis, R. W., Tompkins, R. G., Camp, D. G., 2nd, and Smith, R. D. (2006) High dynamic range characterization of the trauma patient plasma proteome. Mol. Cell. Proteomics 5, 1899-1913
24. Sun, B., Ranish, J. A., Utleg, A. G., White, J. T., Yan, X., Lin, B., and Hood, L. (2007) Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics. Mol. Cell. Proteomics 6, 141-149 (Pubitemid 46152699)
25. Zhang, W., Zhou, G., Zhao, Y., White, M. A., and Zhao, Y. (2003) Affinity enrichment of plasma membrane for proteomics analysis. Electrophoresis 24, 2855-2863 (Pubitemid 38089077)
26. Lewandrowski, U., Moebius, J., Walter, U., and Sickmann, A. (2006) Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach. Mol. Cell. Proteomics 5, 226-233
27. Zhang, H., Li, X. J., Martin, D. B., and Aebersold, R. (2003) Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 21, 660-666
28. Schiess, R., Mueller, L. N., Schmidt, A., Mueller, M., Wollscheid, B., and Aebersold, R. (2009) Analysis of cell surface proteome changes via label-free, quantitative mass spectrometry. Mol. Cell Proteomics 8, 624-638
29. Wollscheid, B., Bausch-Fluck, D., Henderson, C., O'Brien, R., Bibel, M., Schiess, R., Aebersold, R., and Watts, J. D. (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat. Biotechnol. 27, 378-386
30. Yaffe, D., and Saxel, O. (1977) Serial passaging and differentiation of myogenic cells isolated from dystrophic mouse muscle. Nature 270, 725-727 (Pubitemid 8239246)
31. Blau, H. M., Pavlath, G. K., Hardeman, E. C., Chiu, C. P., Silberstein, L., Webster, S. G., Miller, S. C., and Webster, C. (1985) Plasticity of the differentiated state. Science 230, 758-766
32. Burattini, S., Ferri, P., Battistelli, M., Curci, R., Luchetti, F., and Falcieri, E. (2004) C2C12 murine myoblasts as a model of skeletal muscle development: morpho-functional characterization. Eur. J. Histochem. 48, 223-233
33. Molkentin, J. D., and Olson, E. N. (1996) Defining the regulatory networks for muscle development. Curr. Opin. Genet. Dev. 6, 445-453
34. Capanni, C., Del Coco, R., Squarzoni, S., Columbaro, M., Mattioli, E., Camozzi, D., Rocchi, A., Scotlandi, K., Maraldi, N., Foisner, R., and Lattanzi, G. (2008) Prelamin A is involved in early steps of muscle differentiation. Exp. Cell Res. 314, 3628-3637
35. Murray, T. V., McMahon, J. M., Howley, B. A., Stanley, A., Ritter, T., Mohr, A., Zwacka, R., and Feamhead, H. O. (2008) A non-apoptotic role for caspase-9 in muscle differentiation. J. Cell Sci. 121, 3786-3793
36. Buas, M. F., Kabak, S., and Kadesch, T. (2009) Inhibition of myogenesis by Notch: evidence for multiple pathways. J. Cell Physiol. 218, 84-93
37. Favreau, C., Delbarre, E., Courvalin, J. C., and Buendia, B. (2008) Differentiation of C2C12 myoblasts expressing lamin A mutated at a site responsible for Emery-Dreifuss muscular dystrophy is improved by inhibition of the MEK-ERK pathway and stimulation of the PI3-kinase pathway. Exp. Cell Res. 314, 1392-1405
38. Li, B., Lin, M., Tang, Y., Wang, B., and Wang, J. H. (2008) A novel functional assessment of the differentiation of micropatterned muscle cells. J. Biomech. 41, 3349-3353
39. Fanzani, A., Stoppani, E., Gualandi, L., Giuliani, R., Galbiati, F., Rossi, S., Fra, A., Preti, A., and Marchesini, S. (2007) Phenotypic behavior of C2C12 myoblasts upon expression of the dystrophy-related caveolin-3 P104L and TFT mutants. FEBS Lett. 581, 5099-5104 (Pubitemid 47576092)
40. Bonacchi, M., Nistri, S., Nanni, C., Gelsomino, S., Pini, A., Cinci, L., Maiani, M., Zecchi-Orlandini, S., Lorusso, R., Fanti, S., Silvertown, J., and Bani, D. (2009) Functional and histopathological improvement of the post-infarcted rat heart upon myoblast cell grafting and relaxin therapy. J. Cell Mol. Med., in press
41. Formigli, L., Perna, A. M., Meacci, E., Cinci, L., Margheri, M., Nistri, S., Tani, A., Silvertown, J., Orlandini, G., Porciani, C., Zecchi-Orlandini, S., Medin, J., and Bani, D. (2007) Paracrine effects of transplanted myoblasts and relaxin on post-infarction heart remodelling. J. Cell. Mol. Med. 11, 1087-1100
42. Reinecke, H., and Murry, C. E. (2000) Transmural replacement of myocardium after skeletal myoblast grafting into the heart. Too much of a good thing? Cardiovasc. Pathol. 9, 337-344
43. Minty, A., Blau, H., and Kedes, L. (1986) Two-level regulation of cardiac actin gene transcription: muscle-specific modulating factors can accumulate before gene activation. Mol. Cell. Biol. 6, 2137-2148
44. Koban, M. U., Brugh, S. A., Riordon, D. R., Dellow, K. A., Yang, H. T., Tweedie, D., and Boheler, K. R. (2001) A distant upstream region of the rat multipartite Na(+)-Ca(2+) exchanger NCX1 gene promoter is sufficient to confer cardiac-specific expression. Mech. Dev. 109, 267-279
45. Kersey, P. J., Duarte, J., Williams, A., Karavidopoulou, Y., Birney, E., and Apweiler, R. (2004) The International Protein Index: an integrated database for proteomics experiments. Proteomics 4, 1985-1988 (Pubitemid 38880363)
46. Keller, A., Nesvizhskii, A. I., Kolker, E., and Aebersold, R. (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74, 5383-5392
47. Nesvizhskii, A. I., Keller, A., Kolker, E., and Aebersold, R. (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75, 4646-4658
48. Tusnády, G. E., and Simon, I. (2001) The HMMTOP transmembrane topology prediction server. Bioinformatics 17, 849-850
49. Tusnády, G. E., and Simon, I. (1998) Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J. Mol. Biol. 283, 489-506
50. Hirokawa, T., Boon-Chieng, S., and Mitaku, S. (1998) SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14, 378-379 (Pubitemid 28393805)
51. Persson, B., and Argos, P. (1997) Prediction of membrane protein topology utilizing multiple sequence alignments. J. Protein Chem. 16, 453-457 (Pubitemid 27306548)
52. Tannu, N. S., Rao, V. K., Chaudhary, R. M., Giorgianni, F., Saeed, A. E., Gao, Y., and Raghow, R. (2004) Comparative proteomes of the proliferating C(2)C(12) myoblasts and fully differentiated myotubes reveal the complexity of the skeletal muscle differentiation program. Mol. Cell. Proteomics 3, 1065-1082
53. Kislinger, T., Gramolini, A. O., Pan, Y., Rahman, K., MacLennan, D. H., and Emili, A. (2005) Proteome dynamics during C2C12 myoblast differentiation. Mol. Cell. Proteomics. 4, 887-901
54. Capkovic, K. L., Stevenson, S., Johnson, M. C., Thelen, J. J., and Cornelison, D. D. (2008) Neural cell adhesion molecule (NCAM) marks adult myogenic cells committed to differentiation. Exp. Cell Res. 314, 1553-1565
55. Moran, J. L., Li, Y., Hill, A. A., Mounts, W. M., and Miller, C. P. (2002) Gene expression changes during mouse skeletal myoblast differentiation revealed by transcriptional profiling. Physiol. Genomics 10, 103-111 (Pubitemid 135707434)
56. Tomczak, K. K., Marinescu, V. D., Ramoni, M. F., Sanoudou, D., Montanaro, F., Han, M., Kunkel, L. M., Kohane, I. S., and Beggs, A. H. (2004) Expression profiling and identification of novel genes involved in myogenic differentiation. FASEB J. 18, 403-405
57. Côté, R. G., Jones, P., Martens, L., Kerrien, S., Reisinger, F., Lin, Q., Leinonen, R., Apweiler, R., and Hermjakob, H. (2007) The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinformatics 8, 401
58. Alibés, A., Yankilevich, P., Cañada, A., and Díaz-Uriarte, R. (2007) IDconverter and IDCIight: conversion and annotation of gene and protein IDs. BMC Bioinformatics 8, 9
59. Zola, H., Swart, B., Banham, A., Barry, S., Beare, A., Bensussan, A., Boumsell, L., Buckley, C. D., Bühring, H. J., Clark, G., Engel, P., Fox, D., Jin, B. Q., Macardle, P. J., Malavasi, F., Mason, D., Stockinger, H., and Yang, X. (2007) CD molecules 2006 - human cell differentiation molecules. J. Immunol. Methods 319, 1-5 (Pubitemid 46107469)
60. Caragea, C., Sinapov, J., Silvescu, A., Dobbs, D., and Honavar, V. (2007) Glycosylation site prediction using ensembles of Support Vector Machine classifiers. BMC Bioinformatics 8, 438 (Pubitemid 351189034)
61. Bornemann, A., and Schmalbruch, H. (1994) Immunocytochemistry of M-cadherin in mature and regenerating rat muscle. Anat. Rec. 239, 119-125
62. Irintchev, A., Zeschnigk, M., Starzinski-Powitz, A., and Wernig, A. (1994) Expression pattern of M-cadherin in normal, denervated, and regenerating mouse muscles. Dev. Dyn. 199, 326-337
63. Wróbel, E., Brzóska, E., and Moraczewski, J. (2007) M-cadherin and beta-catenin participate in differentiation of rat satellite cells. Eur. J. Cell Biol. 86, 99-109
64. Adams, J. C., and Lawler, J. (1994) Cell-type specific adhesive interactions of skeletal myoblasts with thrombospondin-1. Mol. Biol. Cell 5, 423-437
65. Zhang, X., Liu, C., Nestor, K. E., McFarland, D. C., and Velleman, S. G. (2007) The effect of glypican-1 glycosaminoglycan chains on turkey myogenic satellite cell proliferation, differentiation, and fibroblast growth factor 2 responsiveness. Poult. Sci. 86, 2020-2028
66. Velleman, S. G., Coy, C. S., and McFarland, D. C. (2007) Effect of syndecan-1, syndecan-4, and glypican-1 on turkey muscle satellite cell proliferation, differentiation, and responsiveness to fibroblast growth factor 2. Poult. Sci. 86, 1406-1413
67. Velleman, S. G., Liu, C., Coy, C. S., and McFarland, D. C. (2006) Effects of glypican-1 on turkey skeletal muscle cell proliferation, differentiation and fibroblast growth factor 2 responsiveness. Dev. Growth Differ. 48, 271-276
68. Speers, A. E., and Wu, C. C. (2007) Proteomics of integral membrane proteins-theory and application. Chem. Rev. 107, 3687-3714
69. Macher, B. A., and Yen, T. Y. (2007) Proteins at membrane surfaces-a review of approaches. Mol. Biosyst. 3, 705-713
70. Josic, D., and Clifton, J. G. (2007) Mammalian plasma membrane proteomics. Proteomics 7, 3010-3029 (Pubitemid 47359936)
71. Parnas, D., and Linial, M. (1997) Acceleration of neuronal maturation of P19 cells by increasing culture density. Brain Res. Dev. Brain Res. 101, 115-124
72. Tjalsma, H., Lambooy, L., Hermans, P. W., and Swinkels, D. W. (2008) Shedding & shaving: disclosure of proteomic expressions on a bacterial face. Proteomics 8, 1415-1428
73. Wu, C. C., MacCoss, M. J., Howell, K. E., and Yates, J. R., 3rd (2003) A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol. 21, 532-538
74. Le Bihan, T., Goh, T., Stewart, I. I., Salter, A. M., Bukhman, Y. V., Dharsee, M., Ewing, R., and Wiœniewski, J. R. (2006) Differential analysis of membrane proteins in mouse fore- and hindbrain using a label-free approach. J. Proteome Res. 5, 2701-2710 (Pubitemid 44595172)
75. Rodríguez-Ortega, M. J., Norais, N., Bensi, G., Uberatori, S., Capo, S., Mora, M., Scarselli, M., Doro, F., Ferrari, G., Garaguso, I., Maggi, T., Neumann, A., Covre, A., Telford, J. L., and Grandi, G. (2006) Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome. Nat. Biotechnol. 24, 191-197
76. Wei, C., Yang, J., Zhu, J., Zhang, X., Leng, W., Wang, J., Xue, Y., Sun, L., Li, W., Wang, J., and Jin, Q. (2006) Comprehensive proteomic analysis of Shigella flexneri 2a membrane proteins. J. Proteome Res. 5, 1860-1865 (Pubitemid 44232699)
77. Fischer, F., Wolters, D., Rögner, M., and Poetsch, A. (2006) Toward the complete membrane proteome: high coverage of integral membrane proteins through transmembrane peptide detection. Mol. Cell. Proteomics 5, 444-453
78. Khemiri, A., Galland, A., Vaudry, D., Chan Tchi Song, P., Vaudry, H., Jouenne, T., and Cosette, P. (2008) Outer-membrane proteomic maps and surface-exposed proteins of Legionella pneumophila using cellular fractionation and fluorescent labelling. Anal. Bioanal. Chem. 390, 1861-1871
79. Sidibe, A., Yin, X., Tarelli, E., Xiao, Q., Zampetaki, A., Xu, Q., and Mayr, M. (2007) Integrated membrane protein analysis of mature and embryonic stem cell-derived smooth muscle cells using a novel combination of CyDye/biotin labeling. Mol. Cell. Proteomics 6, 1788-1797
80. Fan, X., She, Y. M., Bagshaw, R. D., Callahan, J. W., Schachter, H., and Mahuran, D. J. (2004) A method for proteomic identification of membrane-bound proteins containing Asn-linked oligosaccharides. Anal. Biochem. 332, 178-186
81. Fan, X., She, Y. M., Bagshaw, R. D., Callahan, J. W., Schachter, H., and Mahuran, D. J. (2005) Identification of the hydrophobic glycoproteins of Caenorhabditis elegans. Glycobiology 15, 952-964 (Pubitemid 41518746)
82. Ghosh, D., Krokhin, O., Antonovici, M., Ens, W., Standing, K. G., Beavis, R. C., and Wilkins, J. A. (2004) Lectin affinity as an approach to the proteomic analysis of membrane glycoproteins. J. Proteome Res. 3, 841-850 (Pubitemid 39166246)
83. Goshe, M. B., Blonder, J., and Smith, R. D. (2003) Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis. J. Proteome Res. 2, 153-161 (Pubitemid 37099051)
84. Zhao, Y., Zhang, W., Kho, Y., and Zhao, Y. (2004) Proteomic analysis of integral plasma membrane proteins. Anal. Chem. 76, 1817-1823
85. Perosa, F., Luccarelli, G., Neri, M., De Pinto, V., Ferrone, S., and Dammacco, F. (1998) Evaluation of biotinylated cells as a source of antigens for characterization of their molecular profile. Int. J. Clin. Lab. Res. 28, 246-251
86. Castronovo, V., Waltregny, D., Kischel, P., Roesli, C., Elia, G., Rybak, J. N., and Neri, D. (2006) A chemical proteomics approach for the identification of accessible antigens expressed in human kidney cancer. Mol. Cell. Proteomics 5, 2083-2091
87. Scheurer, S. B., Rybak, J. N., Roesli, C., Brunisholz, R. A., Potthast, F., Schlapbach, R., Neri, D., and Elia, G. (2005) Identification and relative quantification of membrane proteins by surface biotinylation and two-dimensional peptide mapping. Proteomics 5, 2718-2728 (Pubitemid 41059751)
88. Nunomura, K., Nagano, K., Itagaki, C., Taoka, M., Okamura, N., Yamauchi, Y., Sugano, S., Takahashi, N., Izumi, T., and Isobe, T. (2005) Cell surface labeling and mass spectrometry reveal diversity of cell surface markers and signaling molecules expressed in undifferentiated mouse embryonic stem cells. Mol. Cell. Proteomics 4, 1968-1976
89. Peirce, M. J., Wait, R., Begum, S., Saklatvala, J., and Cope, A. P. (2004) Expression profiling of lymphocyte plasma membrane proteins. Mol. Cell. Proteomics 3, 56-65
90. Yu, M. J., Pisitkun, T., Wang, G., Shen, R. F., and Knepper, M. A. (2006) LC-MS/MS analysis of apical and basolateral plasma membranes of rat renal collecting duct cells. Mol. Cell. Proteomics 5, 2131-2145
91. Sostaric, E., Georgiou, A. S., Wong, C. H., Watson, P. F., Holt, W. V., and Fazeli, A. (2006) Global profiling of surface plasma membrane proteome of oviductal epithelial cells. J. Proteome Res. 5, 3029-3037 (Pubitemid 44749220)
92. Zhang, H., Loriaux, P., Eng, J., Campbell, D., Keller, A., Moss, P., Bonneau, R., Zhang, N., Zhou, Y., Wollscheid, B., Cooke, K., Yi, E. C., Lee, H., Peskind, E. R., Zhang, J., Smith, R. D., and Aebersold, R. (2006) UniPep - a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biol. 7, R73
93. Mishra, G. R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T. M., Menon, S., Hanumanthu, G., Gupta, M., Upendran, S., Gupta, S., Mahesh, M., Jacob, B., Mathew, P., Chatterjee, P., Arun, K. S., Sharma, S., Chandrika, K. N., Deshpande, N., Palvankar, K., Raghavnath, R., Krishnakanth, R., Karathia, H., Rekha, B., Nayak, R., Vishnupriya, G., Kumar, H. G., Nagini, M., Kumar, G. S., Jose, R., Deepthi, P., Mohan, S. S., Gandhi, T. K., Harsha, H. C., Deshpande, K. S., Sarker, M., Prasad, T. S., and Pandey, A. (2006) Human protein reference database - 2006 update. Nucleic Acids Res. 34, D411-D414
94. Kamitani, S., and Sakata, T. (2001) Glycosylation of human CRLR at Asn123 is required for ligand binding and signaling. Biochim. Biophys. Acta 1539, 131-139
95. Kohno, T., and Igarashi, Y. (2004) Roles for N-glycosylation in the dynamics of Edg-1/S1P1 in sphingosine 1-phosphate-stimulated cells. Glycoconj. J. 21, 497-501 (Pubitemid 40585510)
96. Kohno, T., Wada, A., and Igarashi, Y. (2002) N-Glycans of sphingosine 1-phosphate receptor Edg-1 regulate ligand-induced receptor internalization. FASEB J. 16, 983-992 (Pubitemid 34753504)
97. Suzuki, M., Angata, K., Nakayama, J., and Fukuda, M. (2003) Polysialic acid and mucin type O-glycans on the neural cell adhesion molecule differentially regulate myoblast fusion. J. Biol. Chem. 278, 49459-49468
98. Frigeri, A., Nicchia, G. P., Balena, R., Nico, B., and Svelto, M. (2004) Aquaporins in skeletal muscle: reassessment of the functional role of aquaporin-4. FASEB J. 18, 905-907
99. Nielsen, S., Smith, B. L., Christensen, E. I., and Agre, P. (1993) Distribution of the aquaporin CHIP in secretory and resorptive epithelia and capillary endothelia. Proc. Natl. Acad. Sci. U.S.A. 90, 7275-7279
100. Au, C. G., Cooper, S. T., Lo, H. P., Compton, A. G., Yang, N., Wintour, E. M., North, K. N., and Winlaw, D. S. (2004) Expression of aquaporin 1 in human cardiac and skeletal muscle. J. Mol. Cell. Cardiol. 36, 655-662
101. Jimi, T., Wakayama, Y., Inoue, M., Kojima, H., Oniki, H., Matsuzaki, Y., Shibuya, S., Hara, H., and Takahashi, J. (2006) Aquaporin 1: examination of its expression and localization in normal human skeletal muscle tissue. Cells Tissues Organs 184, 181-187 (Pubitemid 46558938)
102. Taylor, S. R., Neering, I. R., Quesenberry, L. A., and Monis, V. A. (1992) Volume changes during contraction of isolated frog muscle fibers. Adv. Exp. Med. Biol. 311, 91-101
103. Neering, I. R., Quesenberry, L. A., Morris, V. A., and Taylor, S. R. (1991) Nonuniform volume changes during muscle contraction. Biophys. J. 59, 926-933
104. Sjøgaard, G., Adams, R. P., and Saltin, B. (1985) Water and ion shifts in skeletal muscle of humans with intense dynamic knee extension. Am. J. Physiol. 248, R190-FI196
105. Li, D., Long, C., Yue, Y., and Duan, D. (2009) Sub-physiological sarcoglycan expression contributes to compensatory muscle protection in mdx mice. Hum. Mol. Genet. 18, 1209-1220
106. Hack, A. A., Lam, M. Y., Cordier, L., Shoturma, D. I., Ly, C. T., Hadhazy, M. A., Hadhazy, M. R., Sweeney, H. L., and McNally, E. M. (2000) Differential requirement for individual sarcoglycans and dystrophin in the assembly and function of the dystrophin-glycoprotein complex. J. Cell Sci. 113, 2535-2544 (Pubitemid 30599409)
107. Ozawa, E., Mizuno, Y., Hagiwara, Y., Sasaoka, T., and Yoshida, M. (2005) Molecular and cell biology of the sarcoglycan complex. Muscle Nerve 32, 563-576 (Pubitemid 41504842)
108. Bönnemann, C. G., Modi, R., Noguchi, S., Mizuno, Y., Yoshida, M., Gussoni, E., McNally, E. M., Duggan, D. J., Angelini, C., and Hoffman, E. P. (1995) Beta-sarcoglycan (A3b) mutations cause autosomal recessive muscular dystrophy with loss of the sarcoglycan complex. Nat. Genet. 11, 266-273
109. Lim, L. E., Duclos, F., Broux, O., Bourg, N., Sunada, Y., Allemand, V., Meyer, J., Richard, I., Moomaw, C., Slaughter, C., Tomé, F. M. S., Fardeau, M., Jackson, C. E., Beckmann, J. S., and Campbell, K. P. (1995) Beta-sarcoglycan: characterization and role in limb-girdle muscular dystrophy linked to 4q12. Nat. Genet. 11, 257-265
110. Knudsen, K. A., Myers, L., and McElwee, S. A. (1990) A role for the Ca2(+)-dependent adhesion molecule, N-cadherin, in myoblast interaction during myogenesis. Exp. Cell Res. 188, 175-184
111. Mege, R. M., Goudou, D., Diaz, C., Nicolet, M., Garcia, L., Geraud, G., and Rieger, F. (1992) N-cadherin and N-CAM in myoblast fusion: compared localisation and effect of blockade by peptides and antibodies. J. Cell Sci. 103, 897-906 (Pubitemid 23042233)
112. Cifuentes-Diaz, C., Nicolet, M., Goudou, D., Rieger, F., and Mège, R. M. (1993) N-cadherin and N-CAM-mediated adhesion in development and regeneration of skeletal muscle. Neuromuscul. Disord. 3, 361-365
113. George-Weinstein, M., Gerhart, J., Blitz, J., Simak, E., and Knudsen, K. A. (1997) N-cadherin promotes the commitment and differentiation of skeletal muscle precursor cells. Dev. Biol. 185, 14-24
114. Holt, C. E., Lemaire, P., and Gurdon, J. B. (1994) Cadherin-mediated cell interactions are necessary for the activation of MyoD in Xenopus mesoderm. Proc. Natl. Acad. Sci. U.S.A. 91, 10844-10848
115. Knudsen, K. A. (1990) Cell adhesion molecules in myogenesis. Curr. Opin. Cell Biol. 2, 902-906
116. Grounds, M. D. (1991) Towards understanding skeletal muscle regeneration. Pathol. Res. Pract. 187, 1-22
117. Gundry, R. L., Boheler, K. R., Van Eyk, J. E., and Wollscheid, B. (2008) A novel role for proteomics in the discovery of cell-surface markers on stem cells: scratching the surface. Proteomics Clin. Appl. 2, 892-903
118. Dormeyer, W., van Hoof, D., Braam, S. R., Heck, A. J., Mummery, C. L., and Krijgsveld, J. (2008) Plasma membrane proteomics of human embryonic stem cells and human embryonal carcinoma cells. J. Proteome Res. 7, 2936-2951
119. Spooncer, E., Brouard, N., Nilsson, S. K., Williams, B., Liu, M. C., Unwin, R. D., Blinco, D., Jaworska, E., Simmons, P. J., and Whetton, A. D. (2008) Developmental fate determination and marker discovery in hematopoietic stem cell biology using proteomic fingerprinting. Mol. Cell. Proteomics 7, 573-581
120. Jankowski, R. J., Deasy, B. M., and Huard, J. (2002) Muscle-derived stem cells. Gene Ther. 9, 642-647