-
3
-
-
0015473745
-
Membrane proteins
-
Guidotti, G. (1972) Membrane proteins. Annu. Rev. Biochem. 41, 731-752
-
(1972)
Annu. Rev. Biochem.
, vol.41
, pp. 731-752
-
-
Guidotti, G.1
-
4
-
-
0016747571
-
Mammalian plasma membranes
-
Bretscher, M. S., and Raff, M. C. (1975) Mammalian plasma membranes. Nature 258, 43-49
-
(1975)
Nature
, vol.258
, pp. 43-49
-
-
Bretscher, M.S.1
Raff, M.C.2
-
5
-
-
60649093057
-
Biochemical and proteomic approaches for the study of membrane microdomains
-
Zheng, Y. Z., and Foster, L. J. (2009) Biochemical and proteomic approaches for the study of membrane microdomains. J. Proteomics 72, 12-22
-
(2009)
J. Proteomics
, vol.72
, pp. 12-22
-
-
Zheng, Y.Z.1
Foster, L.J.2
-
6
-
-
44149092177
-
Membranes: A meeting point for lipids, proteins and therapies
-
Escribá, P. V., Gonzá lez-Ros, J. M., Goñi, F. M., Kinnunen, P. K., Vigh, L., Sánchez-Magraner, L., Fernández, A. M., Busquets, X., Horváth, I., and Barceló-Coblijn, G. (2008) Membranes: a meeting point for lipids, proteins and therapies. J. Cell. Mol. Med. 12, 829-875
-
(2008)
J. Cell. Mol. Med.
, vol.12
, pp. 829-875
-
-
Escribá, P.V.1
González-Ros, J.M.2
Goñi, F.M.3
Kinnunen, P.K.4
Vigh, L.5
Sánchez-Magraner, L.6
Fernández, A.M.7
Busquets, X.8
Horváth, I.9
Barceló-Coblijn, G.10
-
7
-
-
55749115062
-
Proteomics of membrane receptors and signaling
-
Kabbani, N. (2008) Proteomics of membrane receptors and signaling. Proteomics 8, 4146-4155
-
(2008)
Proteomics
, vol.8
, pp. 4146-4155
-
-
Kabbani, N.1
-
8
-
-
29144462024
-
Comparison of normal and breast cancer cell lines using proteome, genome, and interactome data
-
Patwardhan, A. J., Strittmatter, E. F., Camp, D. G., 2nd, Smith, R. D., and Pallavicini, M. G. (2005) Comparison of normal and breast cancer cell lines using proteome, genome, and interactome data. J. Proteome Res. 4, 1952-1960
-
(2005)
J. Proteome Res.
, vol.4
, pp. 1952-1960
-
-
Patwardhan, A.J.1
Strittmatter, E.F.2
Camp II, D.G.3
Smith, R.D.4
Pallavicini, M.G.5
-
9
-
-
34547572949
-
Is Proteomics the New Genomics?
-
DOI 10.1016/j.cell.2007.07.032, PII S0092867407009701
-
Cox, J., and Mann, M. (2007) Is proteomics the new genomics? Cell 130, 395-398 (Pubitemid 47198310)
-
(2007)
Cell
, vol.130
, Issue.3
, pp. 395-398
-
-
Cox, J.1
Mann, M.2
-
10
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
DOI 10.1006/jmbi.2000.4315
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E. L. L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305, 567-580 (Pubitemid 33032862)
-
(2001)
Journal of Molecular Biology
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.L.4
-
11
-
-
0031954925
-
Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
-
Wallin, E., and von Heijne, G. (1998) Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7, 1029-1038 (Pubitemid 28216544)
-
(1998)
Protein Science
, vol.7
, Issue.4
, pp. 1029-1038
-
-
Wallin, E.1
Von Heijne, G.2
-
12
-
-
66349087046
-
The challenge of lipid rafts
-
Pike, L. J. (2009) The challenge of lipid rafts. J. Lipid Res. 50, S323-328
-
(2009)
J. Lipid Res.
, vol.50
, pp. 323-328
-
-
Pike, L.J.1
-
13
-
-
0347236571
-
Insights into a plasma membrane signature
-
Harvey, S., Zhang, Y., Landry, F., Miller, C., and Smith, J. W. (2001) Insights into a plasma membrane signature. Physiol. Genomics 5, 129-136
-
(2001)
Physiol. Genomics
, vol.5
, pp. 129-136
-
-
Harvey, S.1
Zhang, Y.2
Landry, F.3
Miller, C.4
Smith, J.W.5
-
14
-
-
38649120829
-
Drugs and their molecular targets: An updated overview
-
DOI 10.1111/j.1472-8206.2007.00548.x
-
Landry, Y., and Gies, J. P. (2008) Drugs and their molecular targets: an updated overview. Fundam. Clin. Pharmacol. 22, 1-18 (Pubitemid 351171284)
-
(2008)
Fundamental and Clinical Pharmacology
, vol.22
, Issue.1
, pp. 1-18
-
-
Landry, Y.1
Gies, J.-P.2
-
15
-
-
33846474121
-
G-protein-coupled receptors and cancer
-
Dorsam, R. T., and Gutkind, J. S. (2007) G-protein-coupled receptors and cancer. Nat. Rev. Cancer 7, 79-94
-
(2007)
Nat. Rev. Cancer
, vol.7
, pp. 79-94
-
-
Dorsam, R.T.1
Gutkind, J.S.2
-
16
-
-
2342591455
-
The discovery of receptor tyrosine kinases: Targets for cancer therapy
-
Gschwind, A., Fischer, O. M., and Ullrich, A. (2004) The discovery of receptor tyrosine kinases: targets for cancer therapy. Nat. Rev. Cancer 4, 361-370 (Pubitemid 38579482)
-
(2004)
Nature Reviews Cancer
, vol.4
, Issue.5
, pp. 361-370
-
-
Gschwind, A.1
Fischer, O.M.2
Ullrich, A.3
-
17
-
-
33746866699
-
Her2-targeted therapies in non-small cell lung cancer
-
Swanton, C., Futreal, A., and Eisen, T. (2006) Her2-targeted therapies in non-small cell lung cancer. Clin. Cancer Res. 12, 4377s-4383s
-
(2006)
Clin. Cancer Res.
, vol.12
-
-
Swanton, C.1
Futreal, A.2
Eisen, T.3
-
18
-
-
52049093719
-
Quantitative analysis of surface plasma membrane proteins of primary and metastatic melanoma cells
-
Qiu, H., and Wang, Y. (2008) Quantitative analysis of surface plasma membrane proteins of primary and metastatic melanoma cells. J. proteome Res. 7, 1904-1915
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1904-1915
-
-
Qiu, H.1
Wang, Y.2
-
19
-
-
65349161457
-
Proteomic identification of differentially expressed plasma membrane proteins in renal cell carcinoma by stable isotope labelling of a von Hippel-Lindau transfectant cell line model
-
Aggelis, V., Craven, R. A., Peng, J., Harnden, P., Cairns, D. A., Maher, E. R., Tonge, R., Selby, P. J., and Banks, R. E. (2009) Proteomic identification of differentially expressed plasma membrane proteins in renal cell carcinoma by stable isotope labelling of a von Hippel-Lindau transfectant cell line model. Proteomics 9, 2118-2130
-
(2009)
Proteomics
, vol.9
, pp. 2118-2130
-
-
Aggelis, V.1
Craven, R.A.2
Peng, J.3
Harnden, P.4
Cairns, D.A.5
Maher, E.R.6
Tonge, R.7
Selby, P.J.8
Banks, R.E.9
-
20
-
-
57249103219
-
Comparative plasma membrane-associated proteomics of immortalized human hepatocytes
-
Gou, L. T., Tong, A. P., Chen, L. J., Tang, M. H., Chen, B., Liang, S. F., Huang, C., and Wei, Y. Q. (2008) Comparative plasma membrane-associated proteomics of immortalized human hepatocytes. Biochemistry 73, 1200-1206
-
(2008)
Biochemistry
, vol.73
, pp. 1200-1206
-
-
Gou, L.T.1
Tong, A.P.2
Chen, L.J.3
Tang, M.H.4
Chen, B.5
Liang, S.F.6
Huang, C.7
Wei, Y.Q.8
-
21
-
-
55549098927
-
Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
-
Conn, E. M., Madsen, M. A., Cravatt, B. F., Ruf, W., Deryugina, E. I., and Quigley, J. P. (2008) Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation. J. Biol. Chem. 283, 26518-26527
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 26518-26527
-
-
Conn, E.M.1
Madsen, M.A.2
Cravatt, B.F.3
Ruf, W.4
Deryugina, E.I.5
Quigley, J.P.6
-
22
-
-
67049095042
-
Metastasis-related plasma membrane proteins of human breast cancer cells identified by comparative quantitative mass spectrometry
-
Leth-Larsen, R., Lund, R., Hansen, H. V., Laenkholm, A. V., Tarin, D., Jensen, O. N., and Ditzel, H. J. (2009) Metastasis-related plasma membrane proteins of human breast cancer cells identified by comparative quantitative mass spectrometry. Mol. Cell. Proteomics 8, 1436-1449
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1436-1449
-
-
Leth-Larsen, R.1
Lund, R.2
Hansen, H.V.3
Laenkholm, A.V.4
Tarin, D.5
Jensen, O.N.6
Ditzel, H.J.7
-
23
-
-
33750140109
-
Quantification of membrane and membrane-bound proteins in normal and malignant breast cancer cells isolated from the same patient with primary breast carcinoma
-
DOI 10.1021/pr060125o
-
Liang, X., Zhao, J., Hajivandi, M., Wu, R., Tao, J., Amshey, J. W., and Pope, R. M. (2006) Quantification of membrane and membrane-bound proteins in normal and malignant breast cancer cells isolated from the same patient with primary breast carcinoma. J. proteome Res. 5, 2632-2641 (Pubitemid 44595165)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.10
, pp. 2632-2641
-
-
Liang, X.1
Zhao, J.2
Hajivandi, M.3
Wu, R.4
Tao, J.5
Amshey, J.W.6
Pope, R.M.7
-
24
-
-
0043025147
-
Survivin gene expression in early-stage non-small cell lung cancer
-
DOI 10.1002/path.1388
-
Falleni, M., Pellegrini, C., Marchetti, A., Oprandi, B., Buttitta, F., Barassi, F., Santambrogio, L., Coggi, G., and Bosari, S. (2003) Survivin gene expression in early-stage non-small cell lung cancer. J. Pathol. 200, 620-626 (Pubitemid 36987311)
-
(2003)
Journal of Pathology
, vol.200
, Issue.5
, pp. 620-626
-
-
Falleni, M.1
Pellegrini, C.2
Marchetti, A.3
Oprandi, B.4
Buttita, F.5
Barassi, F.6
Santambrogio, L.7
Coggi, G.8
Bosari, S.9
-
25
-
-
23144464171
-
Cancer/testis antigens, gametogenesis and cancer
-
Simpson, A. J., Caballero, O. L., Jungbluth, A., Chen, Y. T., and Old, L. J. (2005) Cancer/testis antigens, gametogenesis and cancer. Nat. Rev. Cancer 5, 615-625
-
(2005)
Nat. Rev. Cancer
, vol.5
, pp. 615-625
-
-
Simpson, A.J.1
Caballero, O.L.2
Jungbluth, A.3
Chen, Y.T.4
Old, L.J.5
-
26
-
-
33746570234
-
Analysis of posttranslational modifications of proteins by tandem mass spectrometry
-
DOI 10.2144/000112201
-
Larsen, M. R., Trelle, M. B., Thingholm, T. E., and Jensen, O. N. (2006) Analysis of posttranslational modifications of proteins by tandem mass spectrometry. BioTechniques 40, 790-798 (Pubitemid 46534920)
-
(2006)
BioTechniques
, vol.40
, Issue.6
, pp. 790-798
-
-
Larsen, M.R.1
Trelle, M.B.2
Thingholm, T.E.3
Jensen, O.N.4
-
27
-
-
33745800293
-
Interpreting the protein language using proteomics
-
Jensen, O. N. (2006) Interpreting the protein language using proteomics. Nat. Rev. Mol. Cell Biol. 7, 391-403
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 391-403
-
-
Jensen, O.N.1
-
28
-
-
0032754473
-
On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database
-
Apweiler, R., Hermjakob, H., and Sharon, N. (1999) On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochim. Biophys. Acta 1473, 4-8
-
(1999)
Biochim. Biophys. Acta
, vol.1473
, pp. 4-8
-
-
Apweiler, R.1
Hermjakob, H.2
Sharon, N.3
-
29
-
-
21744431575
-
The sweet and sour of cancer: Glycans as novel therapeutic targets
-
Fuster, M. M., and Esko, J. D. (2005) The sweet and sour of cancer: glycans as novel therapeutic targets. Nat. Rev. Cancer 5, 526-542
-
(2005)
Nat. Rev. Cancer
, vol.5
, pp. 526-542
-
-
Fuster, M.M.1
Esko, J.D.2
-
30
-
-
33745309867
-
Sialic acid-specific lectins: Occurrence, specificity and function
-
DOI 10.1007/s00018-005-5589-y
-
Lehmann, F., Tiralongo, E., and Tiralongo, J. (2006) Sialic acid-specific lectins: occurrence, specificity and function. Cell. Mol. Life Sci. 63, 1331-1354 (Pubitemid 43939016)
-
(2006)
Cellular and Molecular Life Sciences
, vol.63
, Issue.12
, pp. 1331-1354
-
-
Lehmann, F.1
Tiralongo, E.2
Tiralongo, J.3
-
31
-
-
59349086449
-
Alteration of protein glycosylation in liver diseases
-
Blomme, B., Van Steenkiste, C., Callewaert, N., and Van Vlierberghe, H. (2009) Alteration of protein glycosylation in liver diseases. J. Hepatol. 50, 592-603
-
(2009)
J. Hepatol.
, vol.50
, pp. 592-603
-
-
Blomme, B.1
Van Steenkiste, C.2
Callewaert, N.3
Van Vlierberghe, H.4
-
32
-
-
0030745147
-
Perspectives on the significance of altered glycosylation of glycoproteins in cancer
-
Kim, Y. J., and Varki, A. (1997) Perspectives on the significance of altered glycosylation of glycoproteins in cancer. Glycoconj. J. 14, 569-576
-
(1997)
Glycoconj. J.
, vol.14
, pp. 569-576
-
-
Kim, Y.J.1
Varki, A.2
-
33
-
-
19644364143
-
Hypersialylation of beta1 integrins, observed in colon adenocarcinoma, may contribute to cancer progression by upregulating cell motility
-
Seales, E. C., Jurado, G. A., Brunson, B. A., Wakefield, J. K., Frost, A. R., and Bellis, S. L. (2005) Hypersialylation of beta1 integrins, observed in colon adenocarcinoma, may contribute to cancer progression by upregulating cell motility. Cancer Res. 65, 4645-4652
-
(2005)
Cancer Res.
, vol.65
, pp. 4645-4652
-
-
Seales, E.C.1
Jurado, G.A.2
Brunson, B.A.3
Wakefield, J.K.4
Frost, A.R.5
Bellis, S.L.6
-
34
-
-
39049137589
-
alpha2-6-linked sialic acids on N-glycans modulate carcinoma differentiation in vivo
-
DOI 10.1158/0008-5472.CAN-07-1340
-
Hedlund, M., Ng, E., Varki, A., and Varki, N. M. (2008) alpha 2-6-Linked sialic acids on N-glycans modulate carcinoma differentiation in vivo. Cancer Res. 68, 388-394 (Pubitemid 351380065)
-
(2008)
Cancer Research
, vol.68
, Issue.2
, pp. 388-394
-
-
Hedlund, M.1
Ng, E.2
Varki, A.3
Varki, N.M.4
-
35
-
-
34547929295
-
Diversity in cell surface sialic acid presentations: Implications for biology and disease
-
Varki, N. M., and Varki, A. (2007) Diversity in cell surface sialic acid presentations: implications for biology and disease. Lab. Invest. 87, 851-857
-
(2007)
Lab. Invest.
, vol.87
, pp. 851-857
-
-
Varki, N.M.1
Varki, A.2
-
36
-
-
20844437106
-
Glycans in cancer and inflammation-potential for therapeutics and diagnostics
-
Dube, D. H., and Bertozzi, C. R. (2005) Glycans in cancer and inflammation-potential for therapeutics and diagnostics. Nat. Rev. Drug Discov. 4, 477-488
-
(2005)
Nat. Rev. Drug Discov.
, vol.4
, pp. 477-488
-
-
Dube, D.H.1
Bertozzi, C.R.2
-
37
-
-
58149397996
-
Altered glycosylation in tumours focused to cancer diagnosis
-
Peracaula, R., Barrabés, S., Sarrats, A., Rudd, P. M., and de Llorens, R. (2008) Altered glycosylation in tumours focused to cancer diagnosis. Dis. Markers 25, 207-218
-
(2008)
Dis. Markers
, vol.25
, pp. 207-218
-
-
Peracaula, R.1
Barrabés, S.2
Sarrats, A.3
Rudd, P.M.4
De Llorens, R.5
-
38
-
-
20044377211
-
Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and humans
-
DOI 10.1073/pnas.0408928102
-
Block, T. M., Comunale, M. A., Lowman, M., Steel, L. F., Romano, P. R., Fimmel, C., Tennant, B. C., London, W. T., Evans, A. A., Blumberg, B. S., Dwek, R. A., Mattu, T. S., and Mehta, A. S. (2005) Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and humans. Proc. Natl. Acad. Sci. U.S.A. 102, 779-784 (Pubitemid 40282742)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.3
, pp. 779-784
-
-
Block, T.M.1
Comunale, M.A.2
Lowman, M.3
Steel, L.F.4
Romano, P.R.5
Fimmel, C.6
Tennant, B.C.7
London, W.T.8
Evans, A.A.9
Blumberg, B.S.10
Dwek, R.A.11
Mattu, T.S.12
Mehta, A.S.13
-
39
-
-
49749127215
-
Glycosylation in bladder cancer
-
Ohyama, C. (2008) Glycosylation in bladder cancer. Int. J. Clin. Oncol. 13, 308-313
-
(2008)
Int. J. Clin. Oncol.
, vol.13
, pp. 308-313
-
-
Ohyama, C.1
-
40
-
-
4444269089
-
A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation
-
DOI 10.1021/pr034112b
-
Hägglund, P., Bunkenborg, J., Elortza, F., Jensen, O. N., and Roepstorff, P. (2004) A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation. J. Proteome Res. 3, 556-566 (Pubitemid 39207360)
-
(2004)
Journal of Proteome Research
, vol.3
, Issue.3
, pp. 556-566
-
-
Hagglund, P.1
Bunkenborg, J.2
Elortza, F.3
Jensen, O.N.4
Roepstorff, P.5
-
41
-
-
77953391150
-
Towards an integrated proteomic and glycomic approach to finding cancer biomarkers
-
Taylor, A. D., Hancock, W. S., Hincapie, M., Taniguchi, N., and Hanash, S. M. (2009) Towards an integrated proteomic and glycomic approach to finding cancer biomarkers. Genome Med. 1, 57
-
(2009)
Genome Med.
, vol.1
, pp. 57
-
-
Taylor, A.D.1
Hancock, W.S.2
Hincapie, M.3
Taniguchi, N.4
Hanash, S.M.5
-
42
-
-
67149123659
-
Quantitative serum glycomics of esophageal adenocarcinoma and other esophageal disease
-
Mechref, Y., Hussein, A., Bekesova, S., Pungpapong, V., Zhang, M., Dobrolecki, L. E., Hickey, R. J., Hammoud, Z. T., and Novotny, M. V. (2009) Quantitative serum glycomics of esophageal adenocarcinoma and other esophageal disease. J. Proteome Res. 8, 2656-2666
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2656-2666
-
-
Mechref, Y.1
Hussein, A.2
Bekesova, S.3
Pungpapong, V.4
Zhang, M.5
Dobrolecki, L.E.6
Hickey, R.J.7
Hammoud, Z.T.8
Novotny, M.V.9
-
43
-
-
65249158488
-
Strategy for glycoproteomics: Identification of glyco-alteration using multiple glycan profiling tools
-
Ito, H., Kuno, A., Sawaki, H., Sogabe, M., Ozaki, H., Tanaka, Y., Mizokami, M., Shoda, J., Angata, T., Sato, T., Hirabayashi, J., Ikehara, Y., and Narimatsu, H. (2009) Strategy for glycoproteomics: identification of glyco-alteration using multiple glycan profiling tools. J. Proteome Res. 8, 1358-1367
-
(2009)
J. Proteome Res.
, vol.8
, pp. 1358-1367
-
-
Ito, H.1
Kuno, A.2
Sawaki, H.3
Sogabe, M.4
Ozaki, H.5
Tanaka, Y.6
Mizokami, M.7
Shoda, J.8
Angata, T.9
Sato, T.10
Hirabayashi, J.11
Ikehara, Y.12
Narimatsu, H.13
-
44
-
-
50449090546
-
Glycoproteomics and glycomics investigation of membrane N-glycosylproteins from human colon carcinoma cells
-
Vercoutter-Edouart, A. S., Slomianny, M. C., Dekeyzer-Beseme, O., Haeuw, J. F., and Michalski, J. C. (2008) Glycoproteomics and glycomics investigation of membrane N-glycosylproteins from human colon carcinoma cells. Proteomics 8, 3236-3256
-
(2008)
Proteomics
, vol.8
, pp. 3236-3256
-
-
Vercoutter-Edouart, A.S.1
Slomianny, M.C.2
Dekeyzer-Beseme, O.3
Haeuw, J.F.4
Michalski, J.C.5
-
45
-
-
35649011957
-
Exploring the sialiome using titanium dioxide chromatography and mass spectrometry
-
DOI 10.1074/mcp.M700086-MCP200
-
Larsen, M. R., Jensen, S. S., Jakobsen, L. A., and Heegaard, N. H. (2007) Exploring the sialiome using titanium dioxide chromatography and mass spectrometry. Mol. Cell. Proteomics 6, 1778-1787 (Pubitemid 350031679)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.10
, pp. 1778-1787
-
-
Larsen, M.R.1
Jensen, S.S.2
Jakobsen, L.A.3
Heegaard, N.H.H.4
-
46
-
-
60449111627
-
Glycomic profiling of invasive and non-invasive breast cancer cells
-
Goetz, J. A., Mechref, Y., Kang, P., Jeng, M. H., and Novotny, M. V. (2009) Glycomic profiling of invasive and non-invasive breast cancer cells. Glycoconj. J. 26, 117-131
-
(2009)
Glycoconj. J.
, vol.26
, pp. 117-131
-
-
Goetz, J.A.1
Mechref, Y.2
Kang, P.3
Jeng, M.H.4
Novotny, M.V.5
-
47
-
-
47549097733
-
Breast cancer diagnosis and prognosis through quantitative measurements of serum glycan profiles
-
DOI 10.1373/clinchem.2007.087148
-
Kyselova, Z., Mechref, Y., Kang, P., Goetz, J. A., Dobrolecki, L. E., Sledge, G. W., Schnaper, L., Hickey, R. J., Malkas, L. H., and Novotny, M. V. (2008) Breast cancer diagnosis and prognosis through quantitative measurements of serum glycan profiles. Clin. Chem. 54, 1166-1175 (Pubitemid 352009693)
-
(2008)
Clinical Chemistry
, vol.54
, Issue.7
, pp. 1166-1175
-
-
Kyselova, Z.1
Mechref, Y.2
Kang, P.3
Goetz, J.A.4
Dobrolecki, L.E.5
Sledge, G.W.6
Schnaper, L.7
Hickey, R.J.8
Malkas, L.H.9
Novotny, M.V.10
-
48
-
-
50449083310
-
Evaluation of the serum N-linked glycome for the diagnosis of cancer and chronic inflammation
-
Arnold, J. N., Saldova, R., Hamid, U. M., and Rudd, P. M. (2008) Evaluation of the serum N-linked glycome for the diagnosis of cancer and chronic inflammation. Proteomics 8, 3284-3293
-
(2008)
Proteomics
, vol.8
, pp. 3284-3293
-
-
Arnold, J.N.1
Saldova, R.2
Hamid, U.M.3
Rudd, P.M.4
-
49
-
-
55949105532
-
Membrane glycoproteins associated with breast tumor cell progression identified by a lectin affinity approach
-
Wang, Y., Ao, X., Vuong, H., Konanur, M., Miller, F. R., Goodison, S., and Lubman, D. M. (2008) Membrane glycoproteins associated with breast tumor cell progression identified by a lectin affinity approach. J. Proteome Res. 7, 4313-4325
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4313-4325
-
-
Wang, Y.1
Ao, X.2
Vuong, H.3
Konanur, M.4
Miller, F.R.5
Goodison, S.6
Lubman, D.M.7
-
50
-
-
60349127870
-
Identification and characterization of N-glycosylated proteins using proteomics
-
Selby, D. S., Larsen, M. R., Calvano, C. D., and Jensen, O. N. (2008) Identification and characterization of N-glycosylated proteins using proteomics. Methods Mol. Biol. 484, 263-276
-
(2008)
Methods Mol. Biol.
, vol.484
, pp. 263-276
-
-
Selby, D.S.1
Larsen, M.R.2
Calvano, C.D.3
Jensen, O.N.4
-
51
-
-
0347123435
-
Mucins in cancer: Protection and control of the cell surface
-
Hollingsworth, M. A., and Swanson, B. J. (2004) Mucins in cancer: protection and control of the cell surface. Nat. Rev. Cancer 4, 45-60
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 45-60
-
-
Hollingsworth, M.A.1
Swanson, B.J.2
-
52
-
-
0035405258
-
O-Linked glycosylation in the mammary gland: Changes that occur during malignancy
-
Burchell, J. M., Mungul, A., and Taylor-Papadimitriou, J. (2001) O-Linked glycosylation in the mammary gland: changes that occur during malignancy. J. Mammary Gland Biol. Neoplasia 6, 355-364
-
(2001)
J. Mammary Gland Biol. Neoplasia
, vol.6
, pp. 355-364
-
-
Burchell, J.M.1
Mungul, A.2
Taylor-Papadimitriou, J.3
-
53
-
-
34547661985
-
L-BLP25: A peptide vaccine strategy in non small cell lung cancer
-
Sangha, R., and Butts, C. (2007) L-BLP25: a peptide vaccine strategy in non small cell lung cancer. Clin. Cancer Res. 13, s4652-4654
-
(2007)
Clin. Cancer Res.
, vol.13
-
-
Sangha, R.1
Butts, C.2
-
54
-
-
0141460669
-
Serum tumor markers
-
Perkins, G. L., Slater, E. D., Sanders, G. K., and Prichard, J. G. (2003) Serum tumor markers. Am. Fam. Physician 68, 1075-1082
-
(2003)
Am. Fam. Physician
, vol.68
, pp. 1075-1082
-
-
Perkins, G.L.1
Slater, E.D.2
Sanders, G.K.3
Prichard, J.G.4
-
55
-
-
39449122483
-
New blood-based biomarkers for the diagnosis, staging and prognosis of prostate cancer
-
Shariat, S. F., Karam, J. A., Margulis, V., and Karakiewicz, P. I. (2008) New blood-based biomarkers for the diagnosis, staging and prognosis of prostate cancer. BJU Int. 101, 675-683
-
(2008)
BJU Int.
, vol.101
, pp. 675-683
-
-
Shariat, S.F.1
Karam, J.A.2
Margulis, V.3
Karakiewicz, P.I.4
-
56
-
-
55849094718
-
Phosphoproteomics, oncogenic signaling and cancer research
-
Chong, P. K., Lee, H., Kong, J. W., Loh, M. C., Wong, C. H., and Lim, Y. P. (2008) Phosphoproteomics, oncogenic signaling and cancer research. Proteomics 8, 4370-4382
-
(2008)
Proteomics
, vol.8
, pp. 4370-4382
-
-
Chong, P.K.1
Lee, H.2
Kong, J.W.3
Loh, M.C.4
Wong, C.H.5
Lim, Y.P.6
-
58
-
-
63049113651
-
Analytical strategies for phosphoproteomics
-
Thingholm, T. E., Jensen, O. N., and Larsen, M. R. (2009) Analytical strategies for phosphoproteomics. Proteomics 9, 1451-1468
-
(2009)
Proteomics
, vol.9
, pp. 1451-1468
-
-
Thingholm, T.E.1
Jensen, O.N.2
Larsen, M.R.3
-
59
-
-
69949156862
-
Cell signaling in endometrial carcinoma: Phosphorylated 4E-binding protein-1 expression in endometrial cancer correlates with aggressive tumors and prognosis
-
Castellvi, J., Garcia, A., Ruiz-Marcellan, C., Hernández-Losa, J., Peg, V., Salcedo, M., Gil-Moreno, A., and Ramon y Cajal, S. (2009) Cell signaling in endometrial carcinoma: phosphorylated 4E-binding protein-1 expression in endometrial cancer correlates with aggressive tumors and prognosis. Hum. Pathol. 40, 1418-1426
-
(2009)
Hum. Pathol.
, vol.40
, pp. 1418-1426
-
-
Castellvi, J.1
Garcia, A.2
Ruiz-Marcellan, C.3
Hernández-Losa, J.4
Peg, V.5
Salcedo, M.6
Gil-Moreno, A.7
Ramon Y Cajal, S.8
-
60
-
-
0035723399
-
Protein tyrosine phosphatase genes downregulated in melanoma
-
McArdle, L., Rafferty, M., Maelandsmo, G. M., Bergin, O., Farr, C. J., Dervan, P. A., O'Loughlin, S., Herlyn, M., and Easty, D. J. (2001) Protein tyrosine phosphatase genes downregulated in melanoma. J. Invest. Dermatol. 117, 1255-1260
-
(2001)
J. Invest. Dermatol.
, vol.117
, pp. 1255-1260
-
-
McArdle, L.1
Rafferty, M.2
Maelandsmo, G.M.3
Bergin, O.4
Farr, C.J.5
Dervan, P.A.6
O'Loughlin, S.7
Herlyn, M.8
Easty, D.J.9
-
61
-
-
0034644539
-
Cell signaling by receptor tyrosine kinases
-
Schlessinger, J. (2000) Cell signaling by receptor tyrosine kinases. Cell 103, 211-225
-
(2000)
Cell
, vol.103
, pp. 211-225
-
-
Schlessinger, J.1
-
62
-
-
73349139521
-
Phosphoproteomics and cancer research
-
Ashman, K., and Villar, E. L. (2009) Phosphoproteomics and cancer research. Clin. Transl. Oncol. 11, 356-362
-
(2009)
Clin. Transl. Oncol.
, vol.11
, pp. 356-362
-
-
Ashman, K.1
Villar, E.L.2
-
63
-
-
24944519450
-
Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns
-
Larsen, M. R., Thingholm, T. E., Jensen, O. N., Roepstorff, P., and Jørgensen, T. J. (2005) Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol. Cell. Proteomics 4, 873-886
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 873-886
-
-
Larsen, M.R.1
Thingholm, T.E.2
Jensen, O.N.3
Roepstorff, P.4
Jørgensen, T.J.5
-
64
-
-
60149109196
-
Lapatinib, a HER2 tyrosine kinase inhibitor, induces stabilization and accumulation of HER2 and potentiates trastuzumab-dependent cell cytotoxicity
-
Scaltriti, M., Verma, C., Guzman, M., Jimenez, J., Parra, J. L., Pedersen, K., Smith, D. J., Landolfi, S., Ramon y Cajal, S., Arribas, J., and Baselga, J. (2009) Lapatinib, a HER2 tyrosine kinase inhibitor, induces stabilization and accumulation of HER2 and potentiates trastuzumab-dependent cell cytotoxicity. Oncogene 28, 803-814
-
(2009)
Oncogene
, vol.28
, pp. 803-814
-
-
Scaltriti, M.1
Verma, C.2
Guzman, M.3
Jimenez, J.4
Parra, J.L.5
Pedersen, K.6
Smith, D.J.7
Landolfi, S.8
Ramon Y Cajal, S.9
Arribas, J.10
Baselga, J.11
-
65
-
-
67349143074
-
Anti-epidermal growth factor receptor monoclonal antibodies in cancer treatment
-
Capdevila, J., Elez, E., Macarulla, T., Ramos, F. J., Ruiz-Echarri, M., and Tabernero, J. (2009) Anti-epidermal growth factor receptor monoclonal antibodies in cancer treatment. Cancer Treat. Rev. 35, 354-363
-
(2009)
Cancer Treat. Rev.
, vol.35
, pp. 354-363
-
-
Capdevila, J.1
Elez, E.2
Macarulla, T.3
Ramos, F.J.4
Ruiz-Echarri, M.5
Tabernero, J.6
-
66
-
-
33845267452
-
Emerging applications for phospho-proteomics in cancer molecular therapeutics
-
Moran, M. F., Tong, J., Taylor, P., and Ewing, R. M. (2006) Emerging applications for phospho-proteomics in cancer molecular therapeutics. Biochim. Biophys. Acta 1766, 230-241
-
(2006)
Biochim. Biophys. Acta
, vol.1766
, pp. 230-241
-
-
Moran, M.F.1
Tong, J.2
Taylor, P.3
Ewing, R.M.4
-
67
-
-
0036674501
-
Metastasis: Dissemination and growth of cancer cells in metastatic sites
-
Chambers, A. F., Groom, A. C., and MacDonald, I. C. (2002) Metastasis: Dissemination and growth of cancer cells in metastatic sites. Nat. Rev. Cancer 2, 563-572
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 563-572
-
-
Chambers, A.F.1
Groom, A.C.2
MacDonald, I.C.3
-
68
-
-
55749111003
-
Membrane and membrane-associated proteins involved in the aggressive phenotype displayed by highly invasive cancer cells
-
Dowling, P., Walsh, N., and Clynes, M. (2008) Membrane and membrane-associated proteins involved in the aggressive phenotype displayed by highly invasive cancer cells. Proteomics 8, 4054-4065
-
(2008)
Proteomics
, vol.8
, pp. 4054-4065
-
-
Dowling, P.1
Walsh, N.2
Clynes, M.3
-
69
-
-
38549130224
-
A "class action" against the microenvironment: Do cancer cells cooperate in metastasis?
-
Bidard, F. C., Pierga, J. Y., Vincent-Salomon, A., and Poupon, M. F. (2008) A "class action" against the microenvironment: do cancer cells cooperate in metastasis? Cancer Metastasis Rev. 27, 5-10
-
(2008)
Cancer Metastasis Rev.
, vol.27
, pp. 5-10
-
-
Bidard, F.C.1
Pierga, J.Y.2
Vincent-Salomon, A.3
Poupon, M.F.4
-
70
-
-
0036488589
-
Role of integrins in cell invasion and migration
-
Hood, J. D., and Cheresh, D. A. (2002) Role of integrins in cell invasion and migration. Nat. Rev. Cancer 2, 91-100 (Pubitemid 37328796)
-
(2002)
Nature Reviews Cancer
, vol.2
, Issue.2
, pp. 91-100
-
-
Hood, J.D.1
Cheresh, D.A.2
-
71
-
-
67049098536
-
Efficient isolation and quantitative proteomic analysis of cancer cell plasma membrane proteins for identification of metastasis-associated cell surface markers
-
Lund, R., Leth-Larsen, R., Jensen, O. N., and Ditzel, H. J. (2009) Efficient isolation and quantitative proteomic analysis of cancer cell plasma membrane proteins for identification of metastasis-associated cell surface markers. J. Proteome Res. 8, 3078-3090
-
(2009)
J. Proteome Res.
, vol.8
, pp. 3078-3090
-
-
Lund, R.1
Leth-Larsen, R.2
Jensen, O.N.3
Ditzel, H.J.4
-
72
-
-
26844457138
-
Pancreatic cancer proteome: The proteins that underlie invasion, metastasis, and immunologic escape
-
Chen, R., Yi, E. C., Donohoe, S., Pan, S., Eng, J., Cooke, K., Crispin, D. A., Lane, Z., Goodlett, D. R., Bronner, M. P., Aebersold, R., and Brentnall, T. A. (2005) Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape. Gastroenterology 129, 1187-1197
-
(2005)
Gastroenterology
, vol.129
, pp. 1187-1197
-
-
Chen, R.1
Yi, E.C.2
Donohoe, S.3
Pan, S.4
Eng, J.5
Cooke, K.6
Crispin, D.A.7
Lane, Z.8
Goodlett, D.R.9
Bronner, M.P.10
Aebersold, R.11
Brentnall, T.A.12
-
73
-
-
50949085145
-
Cell membrane proteomic analysis identifies proteins differentially expressed in osteotropic human breast cancer cells
-
Kischel, P., Guillonneau, F., Dumont, B., Bellahcène, A., Stresing, V., Clézardin, P., De Pauw, E. A., and Castronovo, V. (2008) Cell membrane proteomic analysis identifies proteins differentially expressed in osteotropic human breast cancer cells. Neoplasia 10, 1014-1020
-
(2008)
Neoplasia
, vol.10
, pp. 1014-1020
-
-
Kischel, P.1
Guillonneau, F.2
Dumont, B.3
Bellahcène, A.4
Stresing, V.5
Clézardin, P.6
De Pauw, E.A.7
Castronovo, V.8
-
74
-
-
19944408971
-
Limitations of current proteomics technologies
-
Garbis, S., Lubec, G., and Fountoulakis, M. (2005) Limitations of current proteomics technologies. J. Chromatogr. A 1077, 1-18
-
(2005)
J. Chromatogr. A
, vol.1077
, pp. 1-18
-
-
Garbis, S.1
Lubec, G.2
Fountoulakis, M.3
-
75
-
-
1842529218
-
Proteomic Analysis of Integral Plasma Membrane Proteins
-
DOI 10.1021/ac0354037
-
Zhao, Y., Zhang, W., Kho, Y., and Zhao, Y. (2004) Proteomic analysis of integral plasma membrane proteins. Anal. Chem. 76, 1817-1823 (Pubitemid 38451494)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.7
, pp. 1817-1823
-
-
Zhao, Y.1
Zhang, W.2
Kho, Y.3
Zhao, Y.4
-
76
-
-
0036665518
-
Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry
-
DOI 10.1021/pr0255248
-
Blonder, J., Goshe, M. B., Moore, R. J., Pasa-Tolic, L., Masselon, C. D., Lipton, M. S., and Smith, R. D. (2002) Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography and tandem mass spectrometry. J. Proteome Res. 1, 351-360 (Pubitemid 36395876)
-
(2002)
Journal of Proteome Research
, vol.1
, Issue.4
, pp. 351-360
-
-
Blonder, J.1
Goshe, M.B.2
Moore, R.J.3
Pasa-Tolic, L.4
Masselon, C.D.5
Lipton, M.S.6
Smith, R.D.7
-
77
-
-
34548394602
-
Mammalian plasma membrane proteomics
-
Josic, D., and Clifton, J. G. (2007) Mammalian plasma membrane proteomics. Proteomics 7, 3010-3029
-
(2007)
Proteomics
, vol.7
, pp. 3010-3029
-
-
Josic, D.1
Clifton, J.G.2
-
78
-
-
20144365752
-
Experimental Peptide Identification Repository (EPIR): An integrated peptide-centric platform for validation and mining of tandem mass spectrometry data
-
Kristensen, D. B., Brønd, J. C., Nielsen, P. A., Andersen, J. R., Sørensen, O. T., Jørgensen, V., Budin, K., Matthiesen, J., Venø, P., Jespersen, H. M., Ahrens, C. H., Schandorff, S., Ruhoff, P. T., Wisniewski, J. R., Bennett, K. L., and Podtelejnikov, A. V. (2004) Experimental Peptide Identification Repository (EPIR): an integrated peptide-centric platform for validation and mining of tandem mass spectrometry data. Mol. Cell. Proteomics 3, 1023-1038
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1023-1038
-
-
Kristensen, D.B.1
Brønd, J.C.2
Nielsen, P.A.3
Andersen, J.R.4
Sørensen, O.T.5
Jørgensen, V.6
Budin, K.7
Matthiesen, J.8
Venø, P.9
Jespersen, H.M.10
Ahrens, C.H.11
Schandorff, S.12
Ruhoff, P.T.13
Wisniewski, J.R.14
Bennett, K.L.15
Podtelejnikov, A.V.16
-
79
-
-
33846014643
-
Modification of host lipid raft proteome upon hepatitis C virus replication
-
DOI 10.1074/mcp.M600121-MCP200
-
Mannová, P., Fang, R., Wang, H., Deng, B., McIntosh, M. W., Hanash, S. M., and Beretta, L. (2006) Modification of host lipid raft proteome upon hepatitis C virus replication. Mol. Cell. Proteomics 5, 2319-2325 (Pubitemid 46040636)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.12
, pp. 2319-2325
-
-
Mannova, P.1
Fang, R.2
Wang, H.3
Deng, B.4
McIntosh, M.W.5
Hanash, S.M.6
Beretta, L.7
-
80
-
-
33750470785
-
Quantitative membrane proteomics reveals new cellular targets of viral immune modulators
-
Bartee, E., McCormack, A., and Früh, K. (2006) Quantitative membrane proteomics reveals new cellular targets of viral immune modulators. PLoS Pathog. 2, e107
-
(2006)
PLoS Pathog.
, vol.2
-
-
Bartee, E.1
McCormack, A.2
Früh, K.3
-
81
-
-
13844276803
-
Prefractionation techniques in proteome analysis: The mining tools of the third millennium
-
DOI 10.1002/elps.200406189
-
Righetti, P. G., Castagna, A., Antonioli, P., and Boschetti, E. (2005) Prefractionation techniques in proteome analysis: the mining tools of the third millennium. Electrophoresis 26, 297-319 (Pubitemid 40253785)
-
(2005)
Electrophoresis
, vol.26
, Issue.2
, pp. 297-319
-
-
Righetti, P.G.1
Castagna, A.2
Antonioli, P.3
Boschetti, E.4
-
82
-
-
71049168842
-
Stable isotope labeling by amino acids in cell culture and differential plasma membrane proteome quantitation identify new substrates for the MARCH9 transmembrane E3 ligase
-
Hör, S., Ziv, T., Admon, A., and Lehner, P. J. (2009) Stable isotope labeling by amino acids in cell culture and differential plasma membrane proteome quantitation identify new substrates for the MARCH9 transmembrane E3 ligase. Mol. Cell. Proteomics 8, 1959-1971
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1959-1971
-
-
Hör, S.1
Ziv, T.2
Admon, A.3
Lehner, P.J.4
-
83
-
-
29144449245
-
Unbiased examination of changes in plasma membrane proteins in drug resistant cancer cells
-
Rahbar, A. M., and Fenselau, C. (2005) Unbiased examination of changes in plasma membrane proteins in drug resistant cancer cells. J. Proteome Res. 4, 2148-2153
-
(2005)
J. Proteome Res.
, vol.4
, pp. 2148-2153
-
-
Rahbar, A.M.1
Fenselau, C.2
-
84
-
-
34548268026
-
Modelling breast cancer: One size does not fit all
-
DOI 10.1038/nrc2193, PII NRC2193
-
Vargo-Gogola, T., and Rosen, J. M. (2007) Modelling breast cancer: one size does not fit all. Nat. Rev. Cancer 7, 659-672 (Pubitemid 47327411)
-
(2007)
Nature Reviews Cancer
, vol.7
, Issue.9
, pp. 659-672
-
-
Vargo-Gogola, T.1
Rosen, J.M.2
-
85
-
-
34547670709
-
Cancer proteomics by quantitative shotgun proteomics
-
Chen, E. I., and Yates, J. R., 3rd (2007) Cancer proteomics by quantitative shotgun proteomics. Mol. Oncol. 1, 144-159
-
(2007)
Mol. Oncol.
, vol.1
, pp. 144-159
-
-
Chen, E.I.1
Yates III, J.R.2
-
86
-
-
1342326910
-
Relevance of breast cancer cell lines as models for breast tumours: An update
-
DOI 10.1023/B:BREA.0000014042.54925.cc
-
Lacroix, M., and Leclercq, G. (2004) Relevance of breast cancer cell lines as models for breast tumours: an update. Breast Cancer Res. Treat. 83, 249-289 (Pubitemid 38264873)
-
(2004)
Breast Cancer Research and Treatment
, vol.83
, Issue.3
, pp. 249-289
-
-
Lacroix, M.1
Leclercq, G.2
-
87
-
-
17844379227
-
Identification of extracellular and intracellular signaling components of the mammary adipose tissue and its interstitial fluid in high risk breast cancer patients: Toward dissecting the molecular circuitry of epithelial-adipocyte stromal cell interactions
-
Celis, J. E., Moreira, J. M., Cabezón, T., Gromov, P., Friis, E., Rank, F., and Gromova, I. (2005) Identification of extracellular and intracellular signaling components of the mammary adipose tissue and its interstitial fluid in high risk breast cancer patients: toward dissecting the molecular circuitry of epithelial-adipocyte stromal cell interactions. Mol. Cell. Proteomics 4, 492-522
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 492-522
-
-
Celis, J.E.1
Moreira, J.M.2
Cabezón, T.3
Gromov, P.4
Friis, E.5
Rank, F.6
Gromova, I.7
-
88
-
-
33846109371
-
Direct cancer tissue proteomics: A method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues
-
Hwang, S. I., Thumar, J., Lundgren, D. H., Rezaul, K., Mayya, V., Wu, L., Eng, J., Wright, M. E., and Han, D. K. (2007) Direct cancer tissue proteomics: a method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues. Oncogene 26, 65-76
-
(2007)
Oncogene
, vol.26
, pp. 65-76
-
-
Hwang, S.I.1
Thumar, J.2
Lundgren, D.H.3
Rezaul, K.4
Mayya, V.5
Wu, L.6
Eng, J.7
Wright, M.E.8
Han, D.K.9
-
89
-
-
12244254485
-
Proteome analysis of human liver tumor tissue by two-dimensional gel electrophoresis and matrix assisted laser desorption/ionization-mass spectrometry for identification of disease-related proteins
-
Kim, J., Kim, S. H., Lee, S. U., Ha, G. H., Kang, D. G., Ha, N. Y., Ahn, J. S., Cho, H. Y., Kang, S. J., Lee, Y. J., Hong, S. C., Ha, W. S., Bae, J. M., Lee, C. W., and Kim, J. W. (2002) Proteome analysis of human liver tumor tissue by two-dimensional gel electrophoresis and matrix assisted laser desorption/ionization-mass spectrometry for identification of disease-related proteins. Electrophoresis 23, 4142-4156
-
(2002)
Electrophoresis
, vol.23
, pp. 4142-4156
-
-
Kim, J.1
Kim, S.H.2
Lee, S.U.3
Ha, G.H.4
Kang, D.G.5
Ha, N.Y.6
Ahn, J.S.7
Cho, H.Y.8
Kang, S.J.9
Lee, Y.J.10
Hong, S.C.11
Ha, W.S.12
Bae, J.M.13
Lee, C.W.14
Kim, J.W.15
-
90
-
-
33846593395
-
Proteomic analysis identifies candidate proteins associated with distant recurrences in breast cancer after adjuvant chemotherapy
-
Niméus, E., Malmström, J., Johnsson, A., Marko-Varga, G., and Fernö, M. (2007) Proteomic analysis identifies candidate proteins associated with distant recurrences in breast cancer after adjuvant chemotherapy. J. Pharm. Biomed. Anal. 43, 1086-1093
-
(2007)
J. Pharm. Biomed. Anal.
, vol.43
, pp. 1086-1093
-
-
Niméus, E.1
Malmström, J.2
Johnsson, A.3
Marko-Varga, G.4
Fernö, M.5
-
91
-
-
28644451439
-
Proteomic analysis of formalin-fixed prostate cancer tissue
-
DOI 10.1074/mcp.M500102-MCP200
-
Hood, B. L., Darfler, M. M., Guiel, T. G., Furusato, B., Lucas, D. A., Ringeisen, B. R., Sesterhenn, I. A., Conrads, T. P., Veenstra, T. D., and Krizman, D. B. (2005) Proteomic analysis of formalin-fixed prostate cancer tissue. Mol. Cell. Proteomics 4, 1741-1753 (Pubitemid 41749267)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.11
, pp. 1741-1753
-
-
Hood, B.L.1
Darfler, M.M.2
Guiel, T.G.3
Furusato, B.4
Lucas, D.A.5
Ringeisen, B.R.6
Sesterhenn, I.A.7
Conrads, T.P.8
Veenstra, T.D.9
Krizman, D.B.10
-
92
-
-
33847607918
-
European Organisation for Research and Treatment of Cancer (EORTC) Pathobiology Group standard operating procedure for the preparation of human tumour tissue extracts suited for the quantitative analysis of tissue-associated biomarkers
-
Schmitt, M., Mengele, K., Schueren, E., Sweep, F. C., Foekens, J. A., Brünner, N., Laabs, J., Malik, A., and Harbeck, N. (2007) European Organisation for Research and Treatment of Cancer (EORTC) Pathobiology Group standard operating procedure for the preparation of human tumour tissue extracts suited for the quantitative analysis of tissue-associated biomarkers. Eur. J. Cancer 43, 835-844
-
(2007)
Eur. J. Cancer
, vol.43
, pp. 835-844
-
-
Schmitt, M.1
Mengele, K.2
Schueren, E.3
Sweep, F.C.4
Foekens, J.A.5
Brünner, N.6
Laabs, J.7
Malik, A.8
Harbeck, N.9
-
93
-
-
17844379734
-
Proteomic mapping of brain plasma membrane proteins
-
DOI 10.1074/mcp.T500002-MCP200
-
Nielsen, P. A., Olsen, J. V., Podtelejnikov, A. V., Andersen, J. R., Mann, M., and Wisniewski, J. R. (2005) Proteomic mapping of brain plasma membrane proteins. Mol. Cell. Proteomics 4, 402-408 (Pubitemid 40590560)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.4
, pp. 402-408
-
-
Nielsen, P.A.1
Olsen, J.V.2
Podtelejnikov, A.V.3
Andersen, J.R.4
Mann, M.5
Wisniewski, J.R.6
-
94
-
-
57349106602
-
Identification of new accessible tumor antigens in human colon cancer by ex vivo protein biotinylation and comparative mass spectrometry analysis
-
Conrotto, P., Roesli, C., Rybak, J., Kischel, P., Waltregny, D., Neri, D., and Castronovo, V. (2008) Identification of new accessible tumor antigens in human colon cancer by ex vivo protein biotinylation and comparative mass spectrometry analysis. Int. J. Cancer 123, 2856-2864
-
(2008)
Int. J. Cancer
, vol.123
, pp. 2856-2864
-
-
Conrotto, P.1
Roesli, C.2
Rybak, J.3
Kischel, P.4
Waltregny, D.5
Neri, D.6
Castronovo, V.7
-
95
-
-
0346097940
-
The application of clinical proteomics to cancer and other diseases
-
DOI 10.1515/CCLM.2003.239
-
Clarke, W., Zhang, Z., and Chan, D. W. (2003) The application of clinical proteomics to cancer and other diseases. Clin. Chem. Lab. Med. 41, 1562-1570 (Pubitemid 38055006)
-
(2003)
Clinical Chemistry and Laboratory Medicine
, vol.41
, Issue.12
, pp. 1562-1570
-
-
Clarke, W.1
Zhang, Z.2
Chan, D.W.3
-
96
-
-
40549144818
-
Tissue sample collection for proteomics analysis
-
Diaz, J. I., Cazares, L. H., and Semmes, O. J. (2008) Tissue sample collection for proteomics analysis. Methods Mol. Biol. 428, 43-53
-
(2008)
Methods Mol. Biol.
, vol.428
, pp. 43-53
-
-
Diaz, J.I.1
Cazares, L.H.2
Semmes, O.J.3
-
97
-
-
23944520883
-
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples
-
Rai, A. J., Gelfand, C. A., Haywood, B. C., Warunek, D. J., Yi, J., Schuchard, M. D., Mehigh, R. J., Cockrill, S. L., Scott, G. B., Tammen, H., Schulz-Knappe, P., Speicher, D. W., Vitzthum, F., Haab, B. B., Siest, G., and Chan, D. W. (2005) HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples. Proteomics 5, 3262-3277
-
(2005)
Proteomics
, vol.5
, pp. 3262-3277
-
-
Rai, A.J.1
Gelfand, C.A.2
Haywood, B.C.3
Warunek, D.J.4
Yi, J.5
Schuchard, M.D.6
Mehigh, R.J.7
Cockrill, S.L.8
Scott, G.B.9
Tammen, H.10
Schulz-Knappe, P.11
Speicher, D.W.12
Vitzthum, F.13
Haab, B.B.14
Siest, G.15
Chan, D.W.16
-
98
-
-
72149090132
-
Pre-analytical factors in clinical proteomics investigations: Impact of ex vivo protein modifications for multiple sclerosis biomarker discovery
-
Pieragostino, D., Petrucci, F., Del Boccio, P., Mantini, D., Lugaresi, A., Tiberio, S., Onofrj, M., Gambi, D., Sacchetta, P., Di Ilio, C., Federici, G., and Urbani, A. (2010) Pre-analytical factors in clinical proteomics investigations: impact of ex vivo protein modifications for multiple sclerosis biomarker discovery. J. Proteomics 73, 579-592
-
(2010)
J. Proteomics
, vol.73
, pp. 579-592
-
-
Pieragostino, D.1
Petrucci, F.2
Del Boccio, P.3
Mantini, D.4
Lugaresi, A.5
Tiberio, S.6
Onofrj, M.7
Gambi, D.8
Sacchetta, P.9
Di Ilio, C.10
Federici, G.11
Urbani, A.12
-
99
-
-
45549088921
-
Proteomics of breast cancer: The quest for markers and therapeutic targets
-
Hondermarck, H., Tastet, C., El Yazidi-Belkoura, I., Toillon, R. A., and Le Bourhis, X. (2008) Proteomics of breast cancer: the quest for markers and therapeutic targets. J. Proteome Res. 7, 1403-1411
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1403-1411
-
-
Hondermarck, H.1
Tastet, C.2
El Yazidi-Belkoura, I.3
Toillon, R.A.4
Le Bourhis, X.5
-
100
-
-
39749160439
-
Proteomic analysis of laser-captured paraffin-embedded tissues: A molecular portrait of head and neck cancer progression
-
DOI 10.1158/1078-0432.CCR-07-1497
-
Patel, V., Hood, B. L., Molinolo, A. A., Lee, N. H., Conrads, T. P., Braisted, J. C., Krizman, D. B., Veenstra, T. D., and Gutkind, J. S. (2008) Proteomic analysis of laser-captured paraffin-embedded tissues: a molecular portrait of head and neck cancer progression. Clin. Cancer Res. 14, 1002-1014 (Pubitemid 351302545)
-
(2008)
Clinical Cancer Research
, vol.14
, Issue.4
, pp. 1002-1014
-
-
Patel, V.1
Hood, B.L.2
Molinolo, A.A.3
Lee, N.H.4
Conrads, T.P.5
Braisted, J.C.6
Krizman, D.B.7
Veenstra, T.D.8
Gutkind, J.S.9
-
101
-
-
59449107785
-
Breast cancer proteomics reveals correlation between estrogen receptor status and differential phosphorylation of PGRMC1
-
Neubauer, H., Clare, S. E., Wozny, W., Schwall, G. P., Poznanovic, S., Stegmann, W., Vogel, U., Sotlar, K., Wallwiener, D., Kurek, R., Fehm, T., and Cahill, M. A. (2008) Breast cancer proteomics reveals correlation between estrogen receptor status and differential phosphorylation of PGRMC1. Breast Cancer Res. 10, R85
-
(2008)
Breast Cancer Res.
, vol.10
-
-
Neubauer, H.1
Clare, S.E.2
Wozny, W.3
Schwall, G.P.4
Poznanovic, S.5
Stegmann, W.6
Vogel, U.7
Sotlar, K.8
Wallwiener, D.9
Kurek, R.10
Fehm, T.11
Cahill, M.A.12
-
102
-
-
71049141298
-
Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
-
Sprung, R. W., Jr., Brock, J. W., Tanksley, J. P., Li, M., Washington, M. K., Slebos, R. J., and Liebler, D. C. (2009) Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol. Cell. Proteomics 8, 1988-1998
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1988-1998
-
-
Sprung Jr., R.W.1
Brock, J.W.2
Tanksley, J.P.3
Li, M.4
Washington, M.K.5
Slebos, R.J.6
Liebler, D.C.7
-
103
-
-
52049110575
-
Advances in the analysis of protein phosphorylation
-
Paradela, A., and Albar, J. P. (2008) Advances in the analysis of protein phosphorylation. J. Proteome Res. 7, 1809-1818
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1809-1818
-
-
Paradela, A.1
Albar, J.P.2
-
104
-
-
67349272331
-
Glycoproteomics: Past, present and future
-
Tissot, B., North, S. J., Ceroni, A., Pang, P. C., Panico, M., Rosati, F., Capone, A., Haslam, S. M., Dell, A., and Morris, H. R. (2009) Glycoproteomics: past, present and future. FEBS Lett. 583, 1728-1735
-
(2009)
FEBS Lett.
, vol.583
, pp. 1728-1735
-
-
Tissot, B.1
North, S.J.2
Ceroni, A.3
Pang, P.C.4
Panico, M.5
Rosati, F.6
Capone, A.7
Haslam, S.M.8
Dell, A.9
Morris, H.R.10
-
105
-
-
44249099705
-
Glycopeptide analysis by mass spectrometry
-
Dalpathado, D. S., and Desaire, H. (2008) Glycopeptide analysis by mass spectrometry. Analyst 133, 731-738
-
(2008)
Analyst
, vol.133
, pp. 731-738
-
-
Dalpathado, D.S.1
Desaire, H.2
-
106
-
-
49049112270
-
Use of glycan targeting antibodies to identify cancer-associated glycoproteins in plasma of breast cancer patients
-
Cho, W., Jung, K., and Regnier, F. E. (2008) Use of glycan targeting antibodies to identify cancer-associated glycoproteins in plasma of breast cancer patients. Anal. Chem. 80, 5286-5292
-
(2008)
Anal. Chem.
, vol.80
, pp. 5286-5292
-
-
Cho, W.1
Jung, K.2
Regnier, F.E.3
-
107
-
-
61849161703
-
Glycoproteomics of plasma based on narrow selectivity lectin affinity chromatography
-
Jung, K., Cho, W., and Regnier, F. E. (2009) Glycoproteomics of plasma based on narrow selectivity lectin affinity chromatography. J. Proteome Res. 8, 643-650
-
(2009)
J. Proteome Res.
, vol.8
, pp. 643-650
-
-
Jung, K.1
Cho, W.2
Regnier, F.E.3
-
108
-
-
67650112659
-
Targeted glycoproteomic identification of cancer cell glycosylation
-
Powlesland, A. S., Hitchen, P. G., Parry, S., Graham, S. A., Barrio, M. M., Elola, M. T., Mordoh, J., Dell, A., Drickamer, K., and Taylor, M. E. (2009) Targeted glycoproteomic identification of cancer cell glycosylation. Glycobiology 19, 899-909
-
(2009)
Glycobiology
, vol.19
, pp. 899-909
-
-
Powlesland, A.S.1
Hitchen, P.G.2
Parry, S.3
Graham, S.A.4
Barrio, M.M.5
Elola, M.T.6
Mordoh, J.7
Dell, A.8
Drickamer, K.9
Taylor, M.E.10
-
109
-
-
15744387329
-
Monitoring glycosylation pattern changes of glycoproteins using multi-lectin affinity chromatography
-
DOI 10.1016/j.chroma.2005.02.034, PII S0021967305002566
-
Yang, Z., and Hancock, W. S. (2005) Monitoring glycosylation pattern changes of glycoproteins using multi-lectin affinity chromatography. J. Chromatogr. A 1070, 57-64 (Pubitemid 40417767)
-
(2005)
Journal of Chromatography a
, vol.1070
, Issue.1-2
, pp. 57-64
-
-
Yang, Z.1
Hancock, W.S.2
-
110
-
-
33750620940
-
Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers
-
DOI 10.1074/mcp.M600176-MCP200
-
Drake, R. R., Schwegler, E. E., Malik, G., Diaz, J., Block, T., Mehta, A., and Semmes, O. J. (2006) Lectin capture strategies combined with mass spectrometry for the discovery of serum glycoprotein biomarkers. Mol. Cell. Proteomics 5, 1957-1967 (Pubitemid 44688203)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.10
, pp. 1957-1967
-
-
Drake, R.R.1
Schwegler, E.E.2
Malik, G.3
Diaz, J.4
Block, T.5
Mehta, A.6
Semmes, O.J.7
-
111
-
-
13244291497
-
Protein glycosylation analyzed by normal-phase nano-liquid chromatography-mass spectrometry of glycopeptides
-
Wuhrer, M., Koeleman, C. A., Hokke, C. H., and Deelder, A. M. (2005) Protein glycosylation analyzed by normal-phase nano-liquid chromatography-mass spectrometry of glycopeptides. Anal. Chem. 77, 886-894
-
(2005)
Anal. Chem.
, vol.77
, pp. 886-894
-
-
Wuhrer, M.1
Koeleman, C.A.2
Hokke, C.H.3
Deelder, A.M.4
-
112
-
-
0030030481
-
High-performance liquid chromatographic separation of carbohydrates on graphitized carbon columns
-
Koizumi, K. (1996) High-performance liquid chromatographic separation of carbohydrates on graphitized carbon columns. J. Chromatogr. A 720, 119-126
-
(1996)
J. Chromatogr. A
, vol.720
, pp. 119-126
-
-
Koizumi, K.1
-
113
-
-
14344257501
-
Proteomic analysis of glycosylation: Structural determination of N- and O-linked glycans by mass spectrometry
-
Harvey, D. J. (2005) Proteomic analysis of glycosylation: structural determination of N- and O-linked glycans by mass spectrometry. Expert Rev. Proteomics 2, 87-101
-
(2005)
Expert Rev. Proteomics
, vol.2
, pp. 87-101
-
-
Harvey, D.J.1
-
114
-
-
33846542649
-
A serum glycomics approach to breast cancer biomarkers
-
Kirmiz, C., Li, B., An, H. J., Clowers, B. H., Chew, H. K., Lam, K. S., Ferrige, A., Alecio, R., Borowsky, A. D., Sulaimon, S., Lebrilla, C. B., and Miyamoto, S. (2007) A serum glycomics approach to breast cancer biomarkers. Mol. Cell. Proteomics 6, 43-55
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 43-55
-
-
Kirmiz, C.1
Li, B.2
An, H.J.3
Clowers, B.H.4
Chew, H.K.5
Lam, K.S.6
Ferrige, A.7
Alecio, R.8
Borowsky, A.D.9
Sulaimon, S.10
Lebrilla, C.B.11
Miyamoto, S.12
-
115
-
-
33749137280
-
UniPep - A database for human N-linked glycosites: A resource for biomarker discovery
-
DOI 10.1186/gb-2006-7-8-r73
-
Zhang, H., Loriaux, P., Eng, J., Campbell, D., Keller, A., Moss, P., Bonneau, R., Zhang, N., Zhou, Y., Wollscheid, B., Cooke, K., Yi, E. C., Lee, H., Peskind, E. R., Zhang, J., Smith, R. D., and Aebersold, R. (2006) UniPep - a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biol. 7, R73 (Pubitemid 44468851)
-
(2006)
Genome Biology
, vol.7
, Issue.8
-
-
Zhang, H.1
Loriaux, P.2
Eng, J.3
Campbell, D.4
Keller, A.5
Moss, P.6
Bonneau, R.7
Zhang, N.8
Zhou, Y.9
Wollscheid, B.10
Cooke, K.11
Yi, E.C.12
Lee, H.13
Peskind, E.R.14
Zhang, J.15
Smith, R.D.16
Aebersold, R.17
-
116
-
-
77149165069
-
Technologies for plasma membrane proteomics
-
Cordwell, S. J., and Thingholm, T. E. (2010) Technologies for plasma membrane proteomics. Proteomics 10, 611-627
-
(2010)
Proteomics
, vol.10
, pp. 611-627
-
-
Cordwell, S.J.1
Thingholm, T.E.2
-
117
-
-
33749513200
-
Identification of class I MHC-associated phosphopeptides as targets for cancer immunotherapy
-
DOI 10.1073/pnas.0604045103
-
Zarling, A. L., Polefrone, J. M., Evans, A. M., Mikesh, L. M., Shabanowitz, J., Lewis, S. T., Engelhard, V. H., and Hunt, D. F. (2006) Identification of class I MHC-associated phosphopeptides as targets for cancer immunotherapy. Proc. Natl. Acad. Sci. U.S.A. 103, 14889-14894 (Pubitemid 44527824)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.40
, pp. 14889-14894
-
-
Zarling, A.L.1
Polefrone, J.M.2
Evans, A.M.3
Mikesh, L.M.4
Shabanowitz, J.5
Lewis, S.T.6
Engelhard, V.H.7
Hunt, D.F.8
-
118
-
-
33644554807
-
Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in Jurkat cells
-
Kim, J. E., and White, F. M. (2006) Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in Jurkat cells. J. Immunol. 176, 2833-2843
-
(2006)
J. Immunol.
, vol.176
, pp. 2833-2843
-
-
Kim, J.E.1
White, F.M.2
-
119
-
-
34250722602
-
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks
-
DOI 10.1073/pnas.0608638104
-
Wolf-Yadlin, A., Hautaniemi, S., Lauffenburger, D. A., and White, F. M. (2007) Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proc. Natl. Acad. Sci. U.S.A. 104, 5860-5865 (Pubitemid 47175624)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.14
, pp. 5860-5865
-
-
Wolf-Yadlin, A.1
Hautaniemi, S.2
Lauffenburger, D.A.3
White, F.M.4
-
120
-
-
68549104477
-
Increased confidence in large-scale phosphoproteomics data by complementary mass spectrometric techniques and matching of phosphopeptide data sets
-
Alcolea, M. P., Kleiner, O., and Cutillas, P. R. (2009) Increased confidence in large-scale phosphoproteomics data by complementary mass spectrometric techniques and matching of phosphopeptide data sets. J. Proteome Res. 8, 3808-3815
-
(2009)
J. Proteome Res.
, vol.8
, pp. 3808-3815
-
-
Alcolea, M.P.1
Kleiner, O.2
Cutillas, P.R.3
-
121
-
-
42649139982
-
SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides
-
Thingholm, T. E., Jensen, O. N., Robinson, P. J., and Larsen, M. R. (2008) SIMAC (sequential elution from IMAC), a phosphoproteomics strategy for the rapid separation of monophosphorylated from multiply phosphorylated peptides. Mol. Cell. Proteomics 7, 661-671
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 661-671
-
-
Thingholm, T.E.1
Jensen, O.N.2
Robinson, P.J.3
Larsen, M.R.4
-
122
-
-
53049101603
-
TiO(2)-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment
-
Thingholm, T. E., Larsen, M. R., Ingrell, C. R., Kassem, M., and Jensen, O. N. (2008) TiO(2)-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment. J. Proteome Res. 7, 3304-3313
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3304-3313
-
-
Thingholm, T.E.1
Larsen, M.R.2
Ingrell, C.R.3
Kassem, M.4
Jensen, O.N.5
-
123
-
-
66849113517
-
Quantitative proteomics and biomarker discovery in human cancer
-
Zhao, Y., Lee, W. N., and Xiao, G. G. (2009) Quantitative proteomics and biomarker discovery in human cancer. Expert Rev. Proteomics 6, 115-118
-
(2009)
Expert Rev. Proteomics
, vol.6
, pp. 115-118
-
-
Zhao, Y.1
Lee, W.N.2
Xiao, G.G.3
-
124
-
-
41649100689
-
Mining the plasma proteome for cancer biomarkers
-
Hanash, S. M., Pitteri, S. J., and Faca, V. M. (2008) Mining the plasma proteome for cancer biomarkers. Nature 452, 571-579
-
(2008)
Nature
, vol.452
, pp. 571-579
-
-
Hanash, S.M.1
Pitteri, S.J.2
Faca, V.M.3
-
125
-
-
27144462628
-
Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation
-
DOI 10.1634/stemcells.2004-0372
-
Foster, L. J., Zeemann, P. A., Li, C., Mann, M., Jensen, O. N., and Kassem, M. (2005) Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation. Stem Cells 23, 1367-1377 (Pubitemid 41504924)
-
(2005)
Stem Cells
, vol.23
, Issue.9
, pp. 1367-1377
-
-
Foster, L.J.1
Zeemann, P.A.2
Li, C.3
Mann, M.4
Jensen, O.N.5
Kassem, M.6
-
126
-
-
77949862634
-
Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes
-
Van Hoof, D., Dormeyer, W., Braam, S. R., Passier, R., Monshouwer-Kloots, J., Ward-van Oostwaard, D., Heck, A. J., Krijgsveld, J., and Mummery, C. L. (2010) Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. J. Proteome Res. 9, 1610-1618
-
(2010)
J. Proteome Res.
, vol.9
, pp. 1610-1618
-
-
Van Hoof, D.1
Dormeyer, W.2
Braam, S.R.3
Passier, R.4
Monshouwer-Kloots, J.5
Ward-van Oostwaard, D.6
Heck, A.J.7
Krijgsveld, J.8
Mummery, C.L.9
-
127
-
-
33845329203
-
Functional and quantitative proteomics using SILAC
-
Mann, M. (2006) Functional and quantitative proteomics using SILAC. Nat. Rev. Mol. Cell Biol. 7, 952-958
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 952-958
-
-
Mann, M.1
-
128
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
DOI 10.1038/13690
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999 (Pubitemid 29474856)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
129
-
-
1042284932
-
Protein profiling with cleavable isotope-coded affinity tag (cICAT) reagents: The yeast salinity stress response
-
Li, J., Steen, H., and Gygi, S. P. (2003) Protein profiling with cleavable isotope-coded affinity tag (cICAT) reagents: the yeast salinity stress response. Mol. Cell. Proteomics 2, 1198-1204
-
(2003)
Mol. Cell. Proteomics
, vol.2
, pp. 1198-1204
-
-
Li, J.1
Steen, H.2
Gygi, S.P.3
-
130
-
-
47949123468
-
Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: Dynamics of membrane type 1 matrix metalloproteinase-mediated membrane protein shedding
-
Butler, G. S., Dean, R. A., Tam, E. M., and Overall, C. M. (2008) Pharmacoproteomics of a metalloproteinase hydroxamate inhibitor in breast cancer cells: dynamics of membrane type 1 matrix metalloproteinase-mediated membrane protein shedding. Mol. Cell. Biol. 28, 4896-4914
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 4896-4914
-
-
Butler, G.S.1
Dean, R.A.2
Tam, E.M.3
Overall, C.M.4
-
131
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., and Pappin, D. J. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
132
-
-
0035384687
-
18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
-
DOI 10.1021/ac001404c
-
Yao, X., Freas, A., Ramirez, J., Demirev, P. A., and Fenselau, C. (2001) Proteolytic 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus. Anal. Chem. 73, 2836-2842 (Pubitemid 32868136)
-
(2001)
Analytical Chemistry
, vol.73
, Issue.13
, pp. 2836-2842
-
-
Yao, X.1
Freas, A.2
Ramirez, J.3
Demirev, P.A.4
Fenselau, C.5
-
133
-
-
33646269941
-
A perspective on the use of iTRAQ reagent technology for protein complex and profiling studies
-
Zieske, L. R. (2006) A perspective on the use of iTRAQ reagent technology for protein complex and profiling studies. J. Exp. Bot. 57, 1501-1508
-
(2006)
J. Exp. Bot.
, vol.57
, pp. 1501-1508
-
-
Zieske, L.R.1
-
134
-
-
31644449924
-
An optimized strategy for ICAT quantification of membrane proteins
-
DOI 10.1074/mcp.M500205-MCP200
-
Ramus, C., Gonzalez de Peredo, A., Dahout, C., Gallagher, M., and Garin, J. (2006) An optimized strategy for ICAT quantification of membrane proteins. Mol. Cell. Proteomics 5, 68-78 (Pubitemid 43169342)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.1
, pp. 68-78
-
-
Ramus, C.1
De Peredo, A.G.2
Dahout, C.3
Gallagher, M.4
Garin, J.5
-
135
-
-
33645549227
-
Proteomic analysis of nipple aspirate fluid from women with early-stage breast cancer using isotope-coded affinity tags and tandem mass spectrometry reveals differential expression of vitamin D binding protein
-
Pawlik, T. M., Hawke, D. H., Liu, Y., Krishnamurthy, S., Fritsche, H., Hunt, K. K., and Kuerer, H. M. (2006) Proteomic analysis of nipple aspirate fluid from women with early-stage breast cancer using isotope-coded affinity tags and tandem mass spectrometry reveals differential expression of vitamin D binding protein. BMC Cancer 6, 68
-
(2006)
BMC Cancer
, vol.6
, pp. 68
-
-
Pawlik, T.M.1
Hawke, D.H.2
Liu, Y.3
Krishnamurthy, S.4
Fritsche, H.5
Hunt, K.K.6
Kuerer, H.M.7
-
136
-
-
55049129918
-
A multiplexed quantitative strategy for membrane proteomics: Opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease
-
Han, C. L., Chien, C. W., Chen, W. C., Chen, Y. R., Wu, C. P., Li, H., and Chen, Y. J. (2008) A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease. Mol. Cell. Proteomics 7, 1983-1997
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1983-1997
-
-
Han, C.L.1
Chien, C.W.2
Chen, W.C.3
Chen, Y.R.4
Wu, C.P.5
Li, H.6
Chen, Y.J.7
-
137
-
-
72149133974
-
ITRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype
-
Rajcevic, U., Petersen, K., Knol, J. C., Loos, M., Bougnaud, S., Klychnikov, O., Li, K. W., Pham, T. V., Wang, J., Miletic, H., Peng, Z., Bjerkvig, R., Jimenez, C. R., and Niclou, S. P. (2009) iTRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype. Mol. Cell. Proteomics 8, 2595-2612
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2595-2612
-
-
Rajcevic, U.1
Petersen, K.2
Knol, J.C.3
Loos, M.4
Bougnaud, S.5
Klychnikov, O.6
Li, K.W.7
Pham, T.V.8
Wang, J.9
Miletic, H.10
Peng, Z.11
Bjerkvig, R.12
Jimenez, C.R.13
Niclou, S.P.14
-
138
-
-
61849154412
-
Novel breast cancer metastasis-associated proteins
-
Ho, J., Kong, J. W., Choong, L. Y., Loh, M. C., Toy, W., Chong, P. K., Wong, C. H., Wong, C. Y., Shah, N., and Lim, Y. P. (2009) Novel breast cancer metastasis-associated proteins. J. Proteome Res. 8, 583-594
-
(2009)
J. Proteome Res.
, vol.8
, pp. 583-594
-
-
Ho, J.1
Kong, J.W.2
Choong, L.Y.3
Loh, M.C.4
Toy, W.5
Chong, P.K.6
Wong, C.H.7
Wong, C.Y.8
Shah, N.9
Lim, Y.P.10
-
139
-
-
65549149922
-
18O stable isotope labeling in MS-based proteomics
-
Ye, X., Luke, B., Andresson, T., and Blonder, J. (2009) 18O stable isotope labeling in MS-based proteomics. Brief. Funct. Genomic. Proteomic. 8, 136-144
-
(2009)
Brief. Funct. Genomic. Proteomic.
, vol.8
, pp. 136-144
-
-
Ye, X.1
Luke, B.2
Andresson, T.3
Blonder, J.4
-
140
-
-
58149382052
-
Differential membrane proteomics using 18O-labeling to identify biomarkers for cholangiocarcinoma
-
Kristiansen, T. Z., Harsha, H. C., Grønborg, M., Maitra, A., and Pandey, A. (2008) Differential membrane proteomics using 18O-labeling to identify biomarkers for cholangiocarcinoma. J. Proteome Res. 7, 4670-4677
-
(2008)
J. Proteome Res.
, vol.7
, pp. 4670-4677
-
-
Kristiansen, T.Z.1
Harsha, H.C.2
Grønborg, M.3
Maitra, A.4
Pandey, A.5
-
141
-
-
71049168341
-
Enhanced interferon signaling pathway in oral cancer revealed by quantitative proteome analysis of microdissected specimens using 16O/18O labeling and integrated two-dimensional LC-ESI-MALDI tandem MS
-
Chi, L. M., Lee, C. W., Chang, K. P., Hao, S. P., Lee, H. M., Liang, Y., Hsueh, C., Yu, C. J., Lee, I. N., Chang, Y. J., Lee, S. Y., Yeh, Y. M., Chang, Y. S., Chien, K. Y., and Yu, J. S. (2009) Enhanced interferon signaling pathway in oral cancer revealed by quantitative proteome analysis of microdissected specimens using 16O/18O labeling and integrated two-dimensional LC-ESI-MALDI tandem MS. Mol. Cell. Proteomics 8, 1453-1474
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1453-1474
-
-
Chi, L.M.1
Lee, C.W.2
Chang, K.P.3
Hao, S.P.4
Lee, H.M.5
Liang, Y.6
Hsueh, C.7
Yu, C.J.8
Lee, I.N.9
Chang, Y.J.10
Lee, S.Y.11
Yeh, Y.M.12
Chang, Y.S.13
Chien, K.Y.14
Yu, J.S.15
-
142
-
-
33751011581
-
Proteomic analysis of plasma membrane from hypoxia-adapted malignant melanoma
-
DOI 10.1021/pr0601739
-
Stockwin, L. H., Blonder, J., Bumke, M. A., Lucas, D. A., Chan, K. C., Conrads, T. P., Issaq, H. J., Veenstra, T. D., Newton, D. L., and Rybak, S. M. (2006) Proteomic analysis of plasma membrane from hypoxia-adapted malignant melanoma. J. Proteome Res. 5, 2996-3007 (Pubitemid 44749218)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.11
, pp. 2996-3007
-
-
Stockwin, L.H.1
Blonder, J.2
Bumke, M.A.3
Lucas, D.A.4
Chan, K.C.5
Conrads, T.P.6
Issaq, H.J.7
Veenstra, T.D.8
Newton, D.L.9
Rybak, S.M.10
-
143
-
-
71449100011
-
Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue
-
Röwer, C., Vissers, J. P., Koy, C., Kipping, M., Hecker, M., Reimer, T., Gerber, B., Thiesen, H. J., and Glocker, M. O. (2009) Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue. Anal. Bioanal. Chem. 395, 2443-2456
-
(2009)
Anal. Bioanal. Chem.
, vol.395
, pp. 2443-2456
-
-
Röwer, C.1
Vissers, J.P.2
Koy, C.3
Kipping, M.4
Hecker, M.5
Reimer, T.6
Gerber, B.7
Thiesen, H.J.8
Glocker, M.O.9
-
144
-
-
44649122799
-
Identification of estrogen-responsive proteins in MCF-7 human breast cancer cells using label-free quantitative proteomics
-
DOI 10.1002/pmic.200700901
-
Zhu, Z., Boobis, A. R., and Edwards, R. J. (2008) Identification of estrogen-responsive proteins in MCF-7 human breast cancer cells using label-free quantitative proteomics. Proteomics 8, 1987-2005 (Pubitemid 351775779)
-
(2008)
Proteomics
, vol.8
, Issue.10
, pp. 1987-2005
-
-
Zhu, Z.1
Boobis, A.R.2
Edwards, R.J.3
-
145
-
-
22844436250
-
Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
-
DOI 10.1038/nbt1086
-
Ishihama, Y., Sato, T., Tabata, T., Miyamoto, N., Sagane, K., Nagasu, T., and Oda, Y. (2005) Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nat. Biotechnol. 23, 617-621 (Pubitemid 41724902)
-
(2005)
Nature Biotechnology
, vol.23
, Issue.5
, pp. 617-621
-
-
Ishihama, Y.1
Sato, T.2
Tabata, T.3
Miyamoto, N.4
Sagane, K.5
Nagasu, T.6
Oda, Y.7
-
146
-
-
34948836783
-
14-3-3 expression in denervated hippocampus after entorhinal cortex lesion assessed by culture-derived isotope tags in quantitative proteomics
-
Sihlbom, C., Wilhelmsson, U., Li, L., Nilsson, C. L., and Pekny, M. (2007) 14-3-3 expression in denervated hippocampus after entorhinal cortex lesion assessed by culture-derived isotope tags in quantitative proteomics. J. Proteome Res. 6, 3491-3500
-
(2007)
J. Proteome Res.
, vol.6
, pp. 3491-3500
-
-
Sihlbom, C.1
Wilhelmsson, U.2
Li, L.3
Nilsson, C.L.4
Pekny, M.5
-
147
-
-
70449428638
-
Scanning the cell surface proteome of cancer cells and identification of metastasis-associated proteins using a subtractive immunization strategy
-
Rasmussen, N., and Ditzel, H. J. (2009) Scanning the cell surface proteome of cancer cells and identification of metastasis-associated proteins using a subtractive immunization strategy. J. Proteome Res. 8, 5048-5059
-
(2009)
J. Proteome Res.
, vol.8
, pp. 5048-5059
-
-
Rasmussen, N.1
Ditzel, H.J.2
-
148
-
-
20444480567
-
Technology insight: Identification of biomarkers with tissue microarray technology
-
Giltnane, J. M., and Rimm, D. L. (2004) Technology insight: Identification of biomarkers with tissue microarray technology. Nat. Clin. Pract. Oncol. 1, 104-111
-
(2004)
Nat. Clin. Pract. Oncol.
, vol.1
, pp. 104-111
-
-
Giltnane, J.M.1
Rimm, D.L.2
-
149
-
-
72949100523
-
Tissue microarray for routine analysis of breast biomarkers in the clinical laboratory
-
Thomson, T. A., Zhou, C., Chu, C., and Knight, B. (2009) Tissue microarray for routine analysis of breast biomarkers in the clinical laboratory. Am. J. Clin. Pathol. 132, 899-905
-
(2009)
Am. J. Clin. Pathol.
, vol.132
, pp. 899-905
-
-
Thomson, T.A.1
Zhou, C.2
Chu, C.3
Knight, B.4
-
150
-
-
33847776063
-
Standard operating procedure for the collection of fresh frozen tissue samples
-
Mager, S. R., Oomen, M. H., Morente, M. M., Ratcliffe, C., Knox, K., Kerr, D. J., Pezzella, F., and Riegman, P. H. (2007) Standard operating
-
(2007)
Eur. J. Cancer
, vol.43
, pp. 828-834
-
-
Mager, S.R.1
Oomen, M.H.2
Morente, M.M.3
Ratcliffe, C.4
Knox, K.5
Kerr, D.J.6
Pezzella, F.7
Riegman, P.H.8
-
151
-
-
55849123986
-
Proficiency testing of immunohistochemical biomarker assays in breast cancer
-
Wasielewski, R., Hasselmann, S., Rüschoff, J., Fisseler-Eckhoff, A., and Kreipe, H. (2008) Proficiency testing of immunohistochemical biomarker assays in breast cancer. Virchows Arch. 453, 537-543
-
(2008)
Virchows Arch.
, vol.453
, pp. 537-543
-
-
Wasielewski, R.1
Hasselmann, S.2
Rüschoff, J.3
Fisseler-Eckhoff, A.4
Kreipe, H.5
-
152
-
-
0036852721
-
Automated subcellular localization and quantification of protein expression in tissue microarrays
-
Camp, R. L., Chung, G. G., and Rimm, D. L. (2002) Automated subcellular localization and quantification of protein expression in tissue microarrays. Nat. Med. 8, 1323-1327
-
(2002)
Nat. Med.
, vol.8
, pp. 1323-1327
-
-
Camp, R.L.1
Chung, G.G.2
Rimm, D.L.3
-
153
-
-
1242338881
-
Quantitative determination of expression of the prostate cancer protein alpha-methylacyl-CoA race-mase using automated quantitative analysis (AQUA): A novel paradigm for automated and continuous biomarker measurements
-
Rubin, M. A., Zerkowski, M. P., Camp, R. L., Kuefer, R., Hofer, M. D., Chinnaiyan, A. M., and Rimm, D. L. (2004) Quantitative determination of expression of the prostate cancer protein alpha-methylacyl-CoA race-mase using automated quantitative analysis (AQUA): a novel paradigm for automated and continuous biomarker measurements. Am. J. Pathol. 164, 831-840
-
(2004)
Am. J. Pathol.
, vol.164
, pp. 831-840
-
-
Rubin, M.A.1
Zerkowski, M.P.2
Camp, R.L.3
Kuefer, R.4
Hofer, M.D.5
Chinnaiyan, A.M.6
Rimm, D.L.7
-
154
-
-
67349208896
-
Estrogen receptor co-activator (AIB1) protein expression by automated quantitative analysis (AQUA) in a breast cancer tissue microarray and association with patient outcome
-
Harigopal, M., Heymann, J., Ghosh, S., Anagnostou, V., Camp, R. L., and Rimm, D. L. (2009) Estrogen receptor co-activator (AIB1) protein expression by automated quantitative analysis (AQUA) in a breast cancer tissue microarray and association with patient outcome. Breast Cancer Res. Treat. 115, 77-85
-
(2009)
Breast Cancer Res. Treat.
, vol.115
, pp. 77-85
-
-
Harigopal, M.1
Heymann, J.2
Ghosh, S.3
Anagnostou, V.4
Camp, R.L.5
Rimm, D.L.6
-
155
-
-
33646574615
-
Array of informatics: Applications in modern research
-
Kozarova, A., Petrinac, S., Ali, A., and Hudson, J. W. (2006) Array of informatics: applications in modern research. J. Proteome Res. 5, 1051-1059
-
(2006)
J. Proteome Res.
, vol.5
, pp. 1051-1059
-
-
Kozarova, A.1
Petrinac, S.2
Ali, A.3
Hudson, J.W.4
-
156
-
-
33748316484
-
Antibody arrays: Technical considerations and clinical applications in cancer
-
Sanchez-Carbayo, M. (2006) Antibody arrays: technical considerations and clinical applications in cancer. Clin. Chem. 52, 1651-1659
-
(2006)
Clin. Chem.
, vol.52
, pp. 1651-1659
-
-
Sanchez-Carbayo, M.1
-
157
-
-
0036898579
-
Protein microarrays and proteomics
-
MacBeath, G. (2002) Protein microarrays and proteomics. Nat. Genet. 32, (suppl.) 526-532
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 526-532
-
-
MacBeath, G.1
-
158
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., and Gygi, S. P. (2003) Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. U.S.A. 100, 6940-6945
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
159
-
-
33847179916
-
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
-
Pratt, J. M., Simpson, D. M., Doherty, M. K., Rivers, J., Gaskell, S. J., and Beynon, R. J. (2006) Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protoc. 1, 1029-1043
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1029-1043
-
-
Pratt, J.M.1
Simpson, D.M.2
Doherty, M.K.3
Rivers, J.4
Gaskell, S.J.5
Beynon, R.J.6
-
160
-
-
42649091860
-
Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics
-
Mirzaei, H., McBee, J. K., Watts, J., and Aebersold, R. (2008) Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Mol. Cell. Proteomics 7, 813-823
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 813-823
-
-
Mirzaei, H.1
McBee, J.K.2
Watts, J.3
Aebersold, R.4
-
161
-
-
0032836427
-
Measurement of matrix metalloproteinases and tissue inhibitors of metalloproteinases in blood and tissues: Clinical and experimental applications
-
Zucker, S., Hymowitz, M., Conner, C., Zarrabi, H. M., Hurewitz, A. N., Matrisian, L., Boyd, D., Nicolson, G., and Montana, S. (1999) Measurement of matrix metalloproteinases and tissue inhibitors of metalloproteinases in blood and tissues: clinical and experimental applications. Ann. N. Y. Acad. Sci. 878, 212-227
-
(1999)
Ann. N. Y. Acad. Sci.
, vol.878
, pp. 212-227
-
-
Zucker, S.1
Hymowitz, M.2
Conner, C.3
Zarrabi, H.M.4
Hurewitz, A.N.5
Matrisian, L.6
Boyd, D.7
Nicolson, G.8
Montana, S.9
-
162
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
Anderson, N. L., and Anderson, N. G. (2002) The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics 1, 845-867
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
163
-
-
34547217974
-
Biomarker discovery from uveal melanoma secretomes: Identification of gp100 and cathepsin D in patient serum
-
Pardo, M., García, A., Antrobus, R., Blanco, M. J., Dwek, R. A., and Zitzmann, N. (2007) Biomarker discovery from uveal melanoma secretomes: identification of gp100 and cathepsin D in patient serum. J. Proteome Res. 6, 2802-2811
-
(2007)
J. Proteome Res.
, vol.6
, pp. 2802-2811
-
-
Pardo, M.1
García, A.2
Antrobus, R.3
Blanco, M.J.4
Dwek, R.A.5
Zitzmann, N.6
-
164
-
-
68549135368
-
Mass spectrometry (LC-MS/MS) site-mapping of N-glycosylated membrane proteins for breast cancer biomarkers
-
Whelan, S. A., Lu, M., He, J., Yan, W., Saxton, R. E., Faull, K. F., Whitelegge, J. P., and Chang, H. R. (2009) Mass spectrometry (LC-MS/MS) site-mapping of N-glycosylated membrane proteins for breast cancer biomarkers. J. Proteome Res. 8, 4151-4160
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4151-4160
-
-
Whelan, S.A.1
Lu, M.2
He, J.3
Yan, W.4
Saxton, R.E.5
Faull, K.F.6
Whitelegge, J.P.7
Chang, H.R.8
-
165
-
-
34247495453
-
Beta-2-microglobulin is an androgen-regulated secreted protein elevated in serum of patients with advanced prostate cancer
-
DOI 10.1158/1078-0432.CCR-06-1156
-
Gross, M., Top, I., Laux, I., Katz, J., Curran, J., Tindell, C., and Agus, D. (2007) Beta-2-microglobulin is an androgen-regulated secreted protein elevated in serum of patients with advanced prostate cancer. Clin. Cancer Res. 13, 1979-1986 (Pubitemid 46649863)
-
(2007)
Clinical Cancer Research
, vol.13
, Issue.7
, pp. 1979-1986
-
-
Gross, M.1
Top, I.2
Laux, I.3
Katz, J.4
Curran, J.5
Tindell, C.6
Agus, D.7
-
166
-
-
33751036227
-
Serum epidermal growth factor receptor/HER-2 predicts poor survival in patients with metastatic breast cancer
-
DOI 10.1002/cncr.22255
-
Souder, C., Leitzel, K., Ali, S. M., Demers, L., Evans, D. B., Chaudri-Ross, H. A., Hackl, W., Hamer, P., Carney, W., and Lipton, A. (2006) Serum epidermal growth factor receptor/HER-2 predicts poor survival in patients with metastatic breast cancer. Cancer 107, 2337-2345 (Pubitemid 44753823)
-
(2006)
Cancer
, vol.107
, Issue.10
, pp. 2337-2345
-
-
Souder, C.1
Leitzel, K.2
Ali, S.M.3
Demers, L.4
Evans, D.B.5
Chaudri-Ross, H.A.6
Hackl, W.7
Hamer, P.8
Carney, W.9
Lipton, A.10
-
167
-
-
34547097500
-
Serum EGFR and serum HER-2/neu are useful predictive and prognostic markers in metastatic breast cancer patients treated with metronomic chemotherapy
-
DOI 10.1002/cncr.22825
-
Sandri, M. T., Johansson, H. A., Zorzino, L., Salvatici, M., Passerini, R., Maisonneuve, P., Rocca, A., Peruzzotti, G., and Colleoni, M. (2007) Serum EGFR and serum HER-2/neu are useful predictive and prognostic markers in metastatic breast cancer patients treated with metronomic chemotherapy. Cancer 110, 509-517 (Pubitemid 47106138)
-
(2007)
Cancer
, vol.110
, Issue.3
, pp. 509-517
-
-
Sandri, M.T.1
Johansson, H.A.2
Zorzino, L.3
Salvatici, M.4
Passerini, R.5
Maisonneuve, P.6
Rocca, A.7
Peruzzotti, G.8
Colleoni, M.9
-
168
-
-
33750529166
-
Clinical utility of determination of HER-2/neu and EGFR fragments in serum of patients with metastatic breast cancer
-
Witzel, I., Thomssen, C., Krenkel, S., Wilczak, W., Bubenheim, M., Pantel, K., Neumann, R., Jänicke, F., and Müller, V. (2006) Clinical utility of determination of HER-2/neu and EGFR fragments in serum of patients with metastatic breast cancer. Int. J. Biol. Markers 21, 131-140 (Pubitemid 44660284)
-
(2006)
International Journal of Biological Markers
, vol.21
, Issue.3
, pp. 131-140
-
-
Witzel, I.1
Thomssen, C.2
Krenkel, S.3
Wilczak, W.4
Bubenheim, M.5
Pantel, K.6
Neumann, R.7
Janicke, F.8
Muller, V.9
-
169
-
-
53149107465
-
Serum HER-2/neu and relative resistance to trastuzumab-based therapy in patients with metastatic breast cancer
-
Ali, S. M., Carney, W. P., Esteva, F. J., Fornier, M., Harris, L., Köstler, W. J., Lotz, J. P., Luftner, D., Pichon, M. F., and Lipton, A. (2008) Serum HER-2/neu and relative resistance to trastuzumab-based therapy in patients with metastatic breast cancer. Cancer 113, 1294-1301
-
(2008)
Cancer
, vol.113
, pp. 1294-1301
-
-
Ali, S.M.1
Carney, W.P.2
Esteva, F.J.3
Fornier, M.4
Harris, L.5
Köstler, W.J.6
Lotz, J.P.7
Luftner, D.8
Pichon, M.F.9
Lipton, A.10
-
170
-
-
53749085227
-
Increased soluble CD44 concentrations are associated with larger tumor size and lymph node metastasis in breast cancer patients
-
Mayer, S., zur Hausen, A., Watermann, D. O., Stamm, S., Jäger, M., Gitsch, G., and Stickeler, E. (2008) Increased soluble CD44 concentrations are associated with larger tumor size and lymph node metastasis in breast cancer patients. J. Cancer Res. Clin. Oncol. 134, 1229-1235
-
(2008)
J. Cancer Res. Clin. Oncol.
, vol.134
, pp. 1229-1235
-
-
Mayer, S.1
Zur Hausen, A.2
Watermann, D.O.3
Stamm, S.4
Jäger, M.5
Gitsch, G.6
Stickeler, E.7
-
171
-
-
50449087746
-
Clinical application of functional glycoproteomics - Dissection of glycotopes carried by soluble CD44 variants in sera of patients with cancers
-
Lim, K. T., Miyazaki, K., Kimura, N., Izawa, M., and Kannagi, R. (2008) Clinical application of functional glycoproteomics - dissection of glycotopes carried by soluble CD44 variants in sera of patients with cancers. Proteomics 8, 3263-3273
-
(2008)
Proteomics
, vol.8
, pp. 3263-3273
-
-
Lim, K.T.1
Miyazaki, K.2
Kimura, N.3
Izawa, M.4
Kannagi, R.5
-
172
-
-
45549099293
-
Combined experimental and statistical strategy for mass spectrometry based serum protein profiling for diagnosis of breast cancer: A case-control study
-
Callesen, A. K., Vach, W., Jørgensen, P. E., Cold, S., Tan, Q., Depont Christensen, R., Mogensen, O., Kruse, T. A., Jensen, O. N., and Madsen, J. S. (2008) Combined experimental and statistical strategy for mass spectrometry based serum protein profiling for diagnosis of breast cancer: a case-control study. J. Proteome Res. 7, 1419-1426
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1419-1426
-
-
Callesen, A.K.1
Vach, W.2
Jørgensen, P.E.3
Cold, S.4
Tan, Q.5
Depont Christensen, R.6
Mogensen, O.7
Kruse, T.A.8
Jensen, O.N.9
Madsen, J.S.10
-
173
-
-
16544370448
-
Surfaced-enhanced laser desorption/ionization time-of-flight (SELDI-TOF) differentiation of serum protein profiles of BRCA-1 and sporadic breast cancer
-
DOI 10.1245/ASO.2004.03.557
-
Becker, S., Cazares, L. H., Watson, P., Lynch, H., Semmes, O. J., Drake, R. R., and Laronga, C. (2004) Surfaced-enhanced laser desorption/ionization time-of-flight (SELDI-TOF) differentiation of serum protein profiles of BRCA-1 and sporadic breast cancer. Ann. Surg. Oncol. 11, 907-914 (Pubitemid 40486676)
-
(2004)
Annals of Surgical Oncology
, vol.11
, Issue.10
, pp. 907-914
-
-
Becker, S.1
Cazares, L.H.2
Watson, P.3
Lynch, H.4
Semmes, O.J.5
Drake, R.R.6
Laronga, C.7
-
174
-
-
0141502409
-
A novel approach toward development of a rapid blood test for breast cancer
-
Vlahou, A., Laronga, C., Wilson, L., Gregory, B., Fournier, K., McGaughey, D., Perry, R. R., Wright, G. L., Jr., and Semmes, O. J. (2003) A novel approach toward development of a rapid blood test for breast cancer. Clin. Breast Cancer 4, 203-209 (Pubitemid 37185057)
-
(2003)
Clinical Breast Cancer
, vol.4
, Issue.3
, pp. 203-209
-
-
Vlahou, A.1
Laronga, C.2
Wilson, L.3
Gregory, B.4
Fournier, K.5
McGaughey, D.6
Perry, R.R.7
Wright Jr., G.L.8
Semmes, O.J.9
-
175
-
-
0035879210
-
Value of epidermal growth factor receptor, HER2, p53, and steroid receptors in predicting the efficacy of tamoxifen in high-risk postmenopausal breast cancer patients
-
Knoop, A. S., Bentzen, S. M., Nielsen, M. M., Rasmussen, B. B., and Rose, C. (2001) Value of epidermal growth factor receptor, HER2, p53, and steroid receptors in predicting the efficacy of tamoxifen in high-risk postmenopausal breast cancer patients. J. Clin. Oncol. 19, 3376-3384
-
(2001)
J. Clin. Oncol.
, vol.19
, pp. 3376-3384
-
-
Knoop, A.S.1
Bentzen, S.M.2
Nielsen, M.M.3
Rasmussen, B.B.4
Rose, C.5
-
176
-
-
0032537396
-
Tamoxifen for early breast cancer: An overview of the randomised trials
-
Early Breast Cancer Trialists' Collaborative Group
-
Early Breast Cancer Trialists' Collaborative Group (1998) Tamoxifen for early breast cancer: an overview of the randomised trials. Lancet 351, 1451-1467
-
(1998)
Lancet
, vol.351
, pp. 1451-1467
-
-
-
177
-
-
19344364880
-
Effects of chemotherapy and hormonal therapy for early breast cancer on recurrence and 15-year survival: An overview of the randomised trials
-
Early Breast Cancer Trialists' Collaborative Group
-
Early Breast Cancer Trialists' Collaborative Group (2005) Effects of chemotherapy and hormonal therapy for early breast cancer on recurrence and 15-year survival: an overview of the randomised trials. Lancet 365, 1687-1717
-
(2005)
Lancet
, vol.365
, pp. 1687-1717
-
-
-
178
-
-
67650523623
-
Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer
-
Umar, A., Kang, H., Timmermans, A. M., Look, M. P., Meijer-van Gelder, M. E., den Bakker, M. A., Jaitly, N., Martens, J. W., Luider, T. M., Foekens, J. A., and Pasa-Toliæ, L. (2009) Identification of a putative protein profile associated with tamoxifen therapy resistance in breast cancer. Mol. Cell. Proteomics 8, 1278-1294
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1278-1294
-
-
Umar, A.1
Kang, H.2
Timmermans, A.M.3
Look, M.P.4
Meijer-van Gelder, M.E.5
Den Bakker, M.A.6
Jaitly, N.7
Martens, J.W.8
Luider, T.M.9
Foekens, J.A.10
Pasa-Toliæ, L.11
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