메뉴 건너뛰기




Volumn 6, Issue , 2015, Pages

Whole-exome sequencing of pancreatic cancer defines genetic diversity and therapeutic targets

Author keywords

[No Author keywords available]

Indexed keywords

CANCER; CHROMOSOME; DIGESTIVE SYSTEM DISORDER; DISEASE TREATMENT; DNA; ETIOLOGY; GENETIC VARIATION; MUTATION; TUMOR;

EID: 84927144113     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms7744     Document Type: Article
Times cited : (871)

References (42)
  • 2
    • 84893609537 scopus 로고    scopus 로고
    • Genetic progression of pancreatic cancer
    • Cowan, R. W. & Maitra, A. Genetic progression of pancreatic cancer. Cancer J. 20, 80-84 (2014).
    • (2014) Cancer J. , vol.20 , pp. 80-84
    • Cowan, R.W.1    Maitra, A.2
  • 4
    • 84869091997 scopus 로고    scopus 로고
    • Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes
    • Biankin, A. V. et al. Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes. Nature 491, 399-405 (2012).
    • (2012) Nature , vol.491 , pp. 399-405
    • Biankin, A.V.1
  • 5
    • 52149123619 scopus 로고    scopus 로고
    • Core signalling pathways in human pancreatic cancers revealed by global genomic analyses
    • Jones, S. et al. Core signalling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321, 1801-1806 (2008).
    • (2008) Science , vol.321 , pp. 1801-1806
    • Jones, S.1
  • 6
    • 77957726424 scopus 로고    scopus 로고
    • Tumour microenvironment and progression of pancreatic cancer
    • Erkan, M., Reiser-Erkan, C., Michalski, C. W. & Kleeff, J. Tumour microenvironment and progression of pancreatic cancer. Exp. Oncol. 32, 128-131 (2010).
    • (2010) Exp. Oncol. , vol.32 , pp. 128-131
    • Erkan, M.1    Reiser-Erkan, C.2    Michalski, C.W.3    Kleeff, J.4
  • 7
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • Cancer Genome Atlas Research, N. Comprehensive genomic characterization of squamous cell lung cancers. Nature 489, 519-525 (2012).
    • (2012) Nature , vol.489 , pp. 519-525
  • 8
    • 0031427541 scopus 로고    scopus 로고
    • Six hundred fifty consecutive pancreaticoduodenectomies in the 1990s: Pathology, complications, and outcomes
    • Yeo, C. J. et al. Six hundred fifty consecutive pancreaticoduodenectomies in the 1990s: pathology, complications, and outcomes. Ann. Surg. 226, 248-257 (1997).
    • (1997) Ann. Surg. , vol.226 , pp. 248-257
    • Yeo, C.J.1
  • 9
    • 84895907853 scopus 로고    scopus 로고
    • Clinical and pathologic features influencing survival in patients undergoing pancreaticoduodenectomy for pancreatic adenocarcinoma
    • Weber, C. E. et al. Clinical and pathologic features influencing survival in patients undergoing pancreaticoduodenectomy for pancreatic adenocarcinoma. J. Gastrointest. Surg. 18, 340-347 (2014).
    • (2014) J. Gastrointest. Surg. , vol.18 , pp. 340-347
    • Weber, C.E.1
  • 10
    • 84861581164 scopus 로고    scopus 로고
    • Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer
    • Barbieri, C. E. et al. Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer. Nat. Genet. 44, 685-689 (2012).
    • (2012) Nat. Genet. , vol.44 , pp. 685-689
    • Barbieri, C.E.1
  • 11
    • 84877254190 scopus 로고    scopus 로고
    • Integrated genomic characterization of endometrial carcinoma
    • Cancer Genome Atlas Research Network et al. Integrated genomic characterization of endometrial carcinoma. Nature 497, 67-73 (2013).
    • (2013) Nature , vol.497 , pp. 67-73
  • 12
    • 84882837534 scopus 로고    scopus 로고
    • Signatures of mutational processes in human cancer
    • Alexandrov, L. B. et al. Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013).
    • (2013) Nature , vol.500 , pp. 415-421
    • Alexandrov, L.B.1
  • 13
    • 84906303775 scopus 로고    scopus 로고
    • Mechanisms underlying mutational signatures in human cancers
    • Helleday, T., Eshtad, S. & Nik-Zainal, S. Mechanisms underlying mutational signatures in human cancers. Nat. Rev. Genet. 15, 585-598 (2014).
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 585-598
    • Helleday, T.1    Eshtad, S.2    Nik-Zainal, S.3
  • 14
    • 84903390239 scopus 로고    scopus 로고
    • APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumour development
    • Henderson, S., Chakravarthy, A., Su, X., Boshoff, C. & Fenton, T. R. APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumour development. Cell Rep. 7, 1833-1841 (2014).
    • (2014) Cell Rep. , vol.7 , pp. 1833-1841
    • Henderson, S.1    Chakravarthy, A.2    Su, X.3    Boshoff, C.4    Fenton, T.R.5
  • 15
    • 84875425951 scopus 로고    scopus 로고
    • Dormant cancer cells contribute to residual disease in a model of reversible pancreatic cancer
    • Lin, W. C. et al. Dormant cancer cells contribute to residual disease in a model of reversible pancreatic cancer. Cancer Res. 73, 1821-1830 (2013).
    • (2013) Cancer Res. , vol.73 , pp. 1821-1830
    • Lin, W.C.1
  • 16
    • 84880507665 scopus 로고    scopus 로고
    • Mutational heterogeneity in cancer and the search for new cancer-associated genes
    • Lawrence, M. S. et al. Mutational heterogeneity in cancer and the search for new cancer-associated genes. Nature 499, 214-218 (2013).
    • (2013) Nature , vol.499 , pp. 214-218
    • Lawrence, M.S.1
  • 17
    • 84859757956 scopus 로고    scopus 로고
    • Whole-exome sequencing uncovers frequent GNAS mutations in intraductal papillary mucinous neoplasms of the pancreas
    • Furukawa, T. et al. Whole-exome sequencing uncovers frequent GNAS mutations in intraductal papillary mucinous neoplasms of the pancreas. Sci. Rep. 1, 161 (2011).
    • (2011) Sci. Rep. , vol.1 , pp. 161
    • Furukawa, T.1
  • 18
    • 84892833777 scopus 로고    scopus 로고
    • Discovery and saturation analysis of cancer genes across 21 tumour types
    • Lawrence, M. S. et al. Discovery and saturation analysis of cancer genes across 21 tumour types. Nature 505, 495-501 (2014).
    • (2014) Nature , vol.505 , pp. 495-501
    • Lawrence, M.S.1
  • 19
    • 84866410479 scopus 로고    scopus 로고
    • Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing
    • Imielinski, M. et al. Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing. Cell 150, 1107-1120 (2012).
    • (2012) Cell , vol.150 , pp. 1107-1120
    • Imielinski, M.1
  • 20
    • 84896084745 scopus 로고    scopus 로고
    • RBM10 regulates alternative splicing
    • Inoue, A. et al. RBM10 regulates alternative splicing. FEBS Lett. 588, 942-947 (2014).
    • (2014) FEBS Lett. , vol.588 , pp. 942-947
    • Inoue, A.1
  • 21
    • 84896126029 scopus 로고    scopus 로고
    • ARID1B is a specific vulnerability in ARID1A-mutant cancers
    • Helming, K. C. et al. ARID1B is a specific vulnerability in ARID1A-mutant cancers. Nat. Med. 20, 251-254 (2014).
    • (2014) Nat. Med. , vol.20 , pp. 251-254
    • Helming, K.C.1
  • 22
    • 84863116014 scopus 로고    scopus 로고
    • Effect of KRAS oncogene substitutions on protein behavior: Implications for signalling and clinical outcome
    • Ihle, N. T. et al. Effect of KRAS oncogene substitutions on protein behavior: implications for signalling and clinical outcome. J. Natl. Cancer Inst. 104, 228-239 (2012).
    • (2012) J. Natl. Cancer Inst. , vol.104 , pp. 228-239
    • Ihle, N.T.1
  • 23
    • 84866242663 scopus 로고    scopus 로고
    • A central role for RAF-->MEK-->ERK signalling in the genesis of pancreatic ductal adenocarcinoma
    • Collisson, E. A. et al. A central role for RAF-->MEK-->ERK signalling in the genesis of pancreatic ductal adenocarcinoma. Cancer Discov. 2, 685-693 (2012).
    • (2012) Cancer Discov. , vol.2 , pp. 685-693
    • Collisson, E.A.1
  • 24
    • 84881112879 scopus 로고    scopus 로고
    • Inactivating mutations of RNF43 confer Wnt dependency in pancreatic ductal adenocarcinoma
    • Jiang, X. et al. Inactivating mutations of RNF43 confer Wnt dependency in pancreatic ductal adenocarcinoma. Proc. Natl Acad. Sci. USA 110, 12649-12654 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 12649-12654
    • Jiang, X.1
  • 25
    • 84906238717 scopus 로고    scopus 로고
    • CDK4/6 inhibitors have potent activity in combination with pathway selective therapeutic agents in models of pancreatic cancer
    • Franco, J., Witkiewicz, A. K. & Knudsen, E. S. CDK4/6 inhibitors have potent activity in combination with pathway selective therapeutic agents in models of pancreatic cancer. Oncotarget 5, 6512-6525 (2014).
    • (2014) Oncotarget , vol.5 , pp. 6512-6525
    • Franco, J.1    Witkiewicz, A.K.2    Knudsen, E.S.3
  • 26
    • 27144532118 scopus 로고    scopus 로고
    • In vivo therapeutic responses contingent on Fanconi anemia/BRCA2 status of the tumour
    • van der Heijden, M. S. et al. In vivo therapeutic responses contingent on Fanconi anemia/BRCA2 status of the tumour. Clin. Cancer Res. 11, 7508-7515 (2005).
    • (2005) Clin. Cancer Res. , vol.11 , pp. 7508-7515
    • Van Der Heijden, M.S.1
  • 27
    • 17244373777 scopus 로고    scopus 로고
    • Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy
    • Farmer, H. et al. Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy. Nature 434, 917-921 (2005).
    • (2005) Nature , vol.434 , pp. 917-921
    • Farmer, H.1
  • 28
    • 84876787550 scopus 로고    scopus 로고
    • The epidemiology of pancreatitis and pancreatic cancer
    • Yadav, D. & Lowenfels, A. B. The epidemiology of pancreatitis and pancreatic cancer. Gastroenterology 144, 1252-1261 (2013).
    • (2013) Gastroenterology , vol.144 , pp. 1252-1261
    • Yadav, D.1    Lowenfels, A.B.2
  • 30
    • 64849092309 scopus 로고    scopus 로고
    • Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene
    • Jones, S. et al. Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene. Science 324, 217 (2009).
    • (2009) Science , vol.324 , pp. 217
    • Jones, S.1
  • 31
    • 3042743983 scopus 로고    scopus 로고
    • Genomic DNA-chip hybridization reveals a higher incidence of genomic amplifications in pancreatic cancer than conventional comparative genomic hybridization and leads to the identification of novel candidate genes
    • Holzmann, K. et al. Genomic DNA-chip hybridization reveals a higher incidence of genomic amplifications in pancreatic cancer than conventional comparative genomic hybridization and leads to the identification of novel candidate genes. Cancer Res. 64, 4428-4433 (2004).
    • (2004) Cancer Res. , vol.64 , pp. 4428-4433
    • Holzmann, K.1
  • 32
    • 84902130578 scopus 로고    scopus 로고
    • The UPF1 R. N. A. surveillance gene is commonly mutated in pancreatic adenosquamous carcinoma
    • Liu, C. et al. The UPF1 R. N. A. surveillance gene is commonly mutated in pancreatic adenosquamous carcinoma. Nat. Med. 20, 596-598 (2014).
    • (2014) Nat. Med. , vol.20 , pp. 596-598
    • Liu, C.1
  • 33
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 34
    • 84874025843 scopus 로고    scopus 로고
    • Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
    • Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 213-219
    • Cibulskis, K.1
  • 35
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt, D. C. et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012).
    • (2012) Genome Res. , vol.22 , pp. 568-576
    • Koboldt, D.C.1
  • 36
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 37
    • 79955166265 scopus 로고    scopus 로고
    • GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
    • Mermel, C. H. et al. GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Genome Biol. 12, R41 (2011).
    • (2011) Genome Biol. , vol.12 , pp. R41
    • Mermel, C.H.1
  • 38
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 39
    • 16444381830 scopus 로고    scopus 로고
    • Tumour classification by tissue microarray profiling: Random forest clustering applied to renal cell carcinoma
    • Shi, T., Seligson, D., Belldegrun, A. S., Palotie, A. & Horvath, S. Tumour classification by tissue microarray profiling: random forest clustering applied to renal cell carcinoma. Mod. Pathol. 18, 547-557 (2005).
    • (2005) Mod. Pathol. , vol.18 , pp. 547-557
    • Shi, T.1    Seligson, D.2    Belldegrun, A.S.3    Palotie, A.4    Horvath, S.5
  • 40
    • 33847172327 scopus 로고    scopus 로고
    • Clustering by passing messages between data points
    • Frey, B. J. & Dueck, D. Clustering by passing messages between data points. Science 315, 972-976 (2007).
    • (2007) Science , vol.315 , pp. 972-976
    • Frey, B.J.1    Dueck, D.2
  • 41
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13, 2498-2504 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 42
    • 84885356115 scopus 로고    scopus 로고
    • A simple consensus approach improves somatic mutation prediction accuracy
    • Goode, D. L. et al. A simple consensus approach improves somatic mutation prediction accuracy. Genome Med. 5, 90 (2013).
    • (2013) Genome Med. , vol.5 , pp. 90
    • Goode, D.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.