Olive oil DNA fingerprinting by multiplex SNP genotyping on fluorescent microspheres

Journal of Agricultural and Food Chemistry

Volumn 63, Issue 12, 2015, Pages 3121-3128

  Kalogianni, Despina P ^a   Bazakos, Christos ^b,d   Boutsika, Lemonia M ^a   Targem, Mehdi Ben ^b   Christopoulos, Theodore K ^a   Kalaitzis, Panagiotis ^b   Ioannou, Penelope C ^c  

^a UNIVERSITY OF PATRAS   (Greece)

^b MEDITERRANEAN AGRONOMIC INSTITUTE OF CHANIA   (Greece)

^c UNIVERSITY OF ATHENS   (Greece)

^d INSTITUT JEAN PIERRE BOURGIN   (France)

Author keywords

fingerprinting; fluorescence; genotyping; Olea europaea L.; olive oil; single nucleotide polymorphisms; varietal origin

Indexed keywords

CONSUMER PROTECTION; FLUORESCENCE; FLUOROPHORES; GENES; MICROSPHERES; MULTIPLEXING; NUCLEOTIDES; OIL SHALE; POLYMORPHISM;

FINGERPRINTING; GENOTYPING; OLEA EUROPAEA L; SINGLE NUCLEOTIDE POLYMORPHISMS; VARIETAL ORIGIN;

OLIVE OIL;

OLEA EUROPAEA;

MICROSPHERE; OLIVE OIL; PLANT DNA; VEGETABLE OIL;

CHEMISTRY; CLASSIFICATION; DEVICES; DISCRIMINANT ANALYSIS; DNA FINGERPRINTING; EVALUATION STUDY; FLUORESCENCE; GENETICS; GENOTYPE; OLIVE TREE; PROCEDURES; SINGLE NUCLEOTIDE POLYMORPHISM;

DISCRIMINANT ANALYSIS; DNA FINGERPRINTING; DNA, PLANT; FLUORESCENCE; GENOTYPE; MICROSPHERES; OLEA; PLANT OILS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84926363264     PISSN: 00218561     EISSN: 15205118     Source Type: Journal    
DOI: 10.1021/jf5054657     Document Type: Article

References (34)

1. Loukas, M.; Krimbas, C. B. History of olive cultivars based on genetic distances J. Hortic. Sci. 1983, 58, 121-127
2. Stefanoudaki, E.; Kotsifaki, F.; Koutsaftakis, A. Sensory and chemical profiles of three European olive varieties (Olea europaea L); an approach for the characterisation and authentication of the extracted oils Sci. Food Agric. 2000, 80, 381-389
3. Casale, M.; Oliveri, P.; Casolino, C.; Sinelli, N.; Zunin, P.; Armanino, C.; Forina, M.; Lanteri, S. Characterisation of PDO olive oil Chianti Classico by non-selective (UV-visible, NIR and MIR spectroscopy) and selective (fatty acid composition) Anal. Chim. Acta 2012, 712, 56-63
4. European Council Regulation No. 510/2006 of 20 March 2006.
5. Sinelli, N.; Casale, M.; Di Egidio, V.; Oliveri, P.; Bassi, D.; Tura, D.; Casiraghi, E. Varietal discrimination of extra virgin olive oils by near and mid infrared spectroscopy Food Res. Int. 2010, 43, 2126-2131
6. Vergara-Barberan, M.; Lerma-Garcia, M. J.; Herrero-Martinez, J. M.; Simo-Alfonso, E. F. Use of protein profiles established by CZE to predict the cultivar of olive leaves and pulps Electrophoresis 2014, 35, 1652-1659
7. Dais, P.; Hatzakis, E. Quality assessment and authentication of virgin olive oil by NMR spectroscopy: a critical review Anal. Chim. Acta 2013, 765, 1-27
8. Casas, J. S.; Gordillo, C. D.; Bueno, E. O.; Exposito, J. M.; Mendoza, M. F.; Hierro, T. A.; Gonzalez, L. G.; Cano, M. M. Characteristics of virgin olive oils from the olive zone of Extremadura (Spain), and an approximation to their varietal origin J. Am. Oil Chem. Soc. 2009, 86, 933-940
9. Laddomada, B.; Colella, G.; Tufariello, M.; Durante, M.; Angiuli, M.; Salvetti, G.; Mita, G. Application of a simplified calorimetric assay for the evaluation of extra virgin olive oil quality Food Res. Int. 2013, 54, 2062-2068
10. Dias, L. G.; Fernandes, A.; Veloso, A. C.; Machado, A. A.; Pereira, J. A.; Peres, A. M. Single-cultivar extra virgin olive oil classification using a potentiometric electronic tongue Food Chem. 2014, 160, 321-329
11. Montealegre, C.; Alegre, M. L. M.; Garcia-Ruiz, C. Traceability markers to the botanical origin in olive oils J. Agric. Food Chem. 2010, 58, 28-38
12. Bracci, T.; Busconi, M.; Fogher, C.; Sebastiani, L. Molecular studies in olive (Olea europaea L.): overview on DNA markers applications and recent advances in genome analysis Plant Cell Rep. 2011, 30, 449-462
13. Agrimonti, C.; Vietina, M.; Pafundo, S.; Marmiroli, N. The use of food genomics to ensure the traceability of olive oil Trends Food Sci. Technol. 2011, 22, 237-244
14. Pasqualone, A.; Montemurro, C.; Summo, C.; Sabetta, W.; Caponio, F.; Blanco, A. Effectiveness of microsatellite DNA markers in checking the identity of protected designation of origin extra virgin olive oil J. Agric. Food Chem. 2007, 55, 3857-3862
15. Martins-Lopes, P.; Gomes, S.; Santos, E.; Guedes-Pinto, H. DNA markers for Portuguese olive oil fingerprinting J. Agric. Food Chem. 2008, 56, 11786-11791
16. Ben-Ayed, R.; Grati-Kamoun, N.; Sans-Grout, C.; Moreau, F.; Rebai, A. Characterization and authenticity of virgin olive oil (Olea europaea L.) cultivars by microsatellite markers Eur. Food Res. Technol. 2012, 234, 263-271
17. Sanz-Cortés, F.; Badenes, M. L.; Paz, S.; Iniguez, A.; Llacer, G. Molecular characterization of olive cultivars using RAPD markers J. Am. Soc. Hortic. Sci. 2001, 126, 7-12
18. Besnard, G.; Breton, C.; Baradat, P.; Khadari, B.; Bervillé, A. Cultivar identification in olive based on RAPD markers J. Am. Soc. Hortic. Sci. 2001, 126, 668-675
19. Pasqualone, A.; Caponio, F.; Blanco, A. Inter-simple sequence repeat DNA markers for identification of drupes from different Olea europaea L. cultivars Eur. Food Res. Technol. 2001, 213, 240-243
20. Gemas, V. J. V.; Almadanim, M. C.; Tenreiro, R.; Martins, A.; Fevereiro, P. Genetic diversity in the olive tree (Olea europaea L. subsp. europaea) cultivated in Portugal revealed by RAPD and ISSR markers Genet. Resour. Crop Evol. 2004, 51, 501-511
21. Pafundo, S.; Agrimonti, C.; Maestri, E.; Marmiroli, N. Applicability of SCAR markers to food genomics: olive oil traceability J. Agric. Food Chem. 2007, 55, 6052-6059
22. Pafundo, S.; Agrimonti, C.; Marmiroli, N. Traceability of plant contribution in olive oil by amplified fragment length polymorphisms J. Agric. Food Chem. 2005, 53, 6995-7002
23. Montemurro, C.; Pasqualone, A.; Simeone, R.; Sabetta, W.; Blanco, A. AFLP molecular markers to identify virgin olive oils from single Italian cultivars Eur. Food Res. Technol. 2008, 226, 1439-1444
24. Consolandi, C.; Palmieri, L.; Severgnini, M.; Maestri, E.; Marmiroli, N.; Agrimonti, C.; Baldoni, L.; Donini, P.; DeBellis, G.; Castiglioni, B. A procedure for olive oil traceability and authenticity: DNA extraction, multiplex PCR and LDR-universal array analysis Eur. Food Res. Technol. 2008, 229, 375-382
25. Bazakos, C.; Dulger, A. O.; Uncu, A. T.; Spaniolas, S.; Spano, T.; Kalaitzis, P. A SNP-based PCR-RFLP capillary electrophoresis analysis for the identification of the varietal origin of olive oils Food Chem. 2012, 134, 2411-2418
26. Perez-Jimenez, M.; Besnard, G.; Dorado, G.; Hernandez, P. Varietal tracing of virgin olive oils based on plastid DNA variation profiling PLoS One 2013, 8 e70507
27. Brookes, A. J. The essence of SNPs Gene 1999, 234, 77-186
28. Gut, I. G. Automation in genotyping of single nucleotide polymorphisms Hum. Mutat. 2001, 17, 475-492
29. Consolandi, C.; Palmieri, L.; Doveri, S.; Maestri, E.; Marmiroli, N.; Reale, S.; Lee, D.; Baldoni, L.; Tosti, N.; Severgnini, M.; de Bellis, G.; Castiglioni, B. Olive variety identification by ligation detection in a universal array format J. Biotechnol. 2007, 129, 565-574
30. Kalogianni, D. P.; Elenis, D. S.; Christopoulos, T. K.; Ioannou, P. C. Multiplex quantitative competitive polymerase chain reaction based on a multianalyte hybridization assay performed on spectrally encoded microspheres Anal. Chem. 2007, 79, 6655-6661
31. Li, Y.; Wu, Y.; Han, J.; Wang, B.; Ge, Y.; Chen, Y. Species-specific identification of seven vegetable oils based on suspension bead array J. Agric. Food Chem. 2012, 60, 2362-2367
32. Saghai-Maroof, M. A.; Soliman, K. M.; Jorgensen, R. A.; Allard, R. W. Ribosomal DNA spacer length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics Proc. Natl. Acad. Sci. U.S.A. 1984, 81, 8014-8018
33. Angiolillo, A.; Mencuccini, M.; Baldoni, L. Olive genetic diversity assessed using amplified fragment length polymorphisms Theor. Appl. Genet. 1999, 98, 411-421
34. Gimenez, M. J.; Piston, F.; Martin, A.; Atienza, S. G. Application of real-time PCR on the development of molecular markers and to evaluate critical aspects for olive oil authentication Food Chem. 2010, 118, 482-487