-
1
-
-
18844406001
-
Measuring the metabolome: current analytical technologies
-
Dunn W.B., Bailey N.J.C., Johnson H.E. Measuring the metabolome: current analytical technologies. Analyst 2005, 130:606-625.
-
(2005)
Analyst
, vol.130
, pp. 606-625
-
-
Dunn, W.B.1
Bailey, N.J.C.2
Johnson, H.E.3
-
2
-
-
84861230997
-
Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry
-
Vuckovic D. Current trends and challenges in sample preparation for global metabolomics using liquid chromatography-mass spectrometry. Anal Chem 2012, 403:1523-1548.
-
(2012)
Anal Chem
, vol.403
, pp. 1523-1548
-
-
Vuckovic, D.1
-
3
-
-
0038699591
-
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting
-
Allen J., Davel H.M., Broadhurst D., Heald J.K., Rowland J.J., Oliver S.G., Kell D.B. High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. Nat Biotechnol 2003, 21:692-696.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 692-696
-
-
Allen, J.1
Davel, H.M.2
Broadhurst, D.3
Heald, J.K.4
Rowland, J.J.5
Oliver, S.G.6
Kell, D.B.7
-
4
-
-
84889258885
-
A stable-isotope mass spectrometry-based metabolic footprinting approach to analyze exudates from phytoplankton
-
Weber R.J.M., Selander E., Sommer U., Viant M.R. A stable-isotope mass spectrometry-based metabolic footprinting approach to analyze exudates from phytoplankton. Mar Drugs 2013, 11:4158-4175.
-
(2013)
Mar Drugs
, vol.11
, pp. 4158-4175
-
-
Weber, R.J.M.1
Selander, E.2
Sommer, U.3
Viant, M.R.4
-
5
-
-
84896896691
-
Metabolomic fingerprinting: challenges and opportunities
-
Kosmides A.K., Kamisoglu K., Calvano S.E., Corbett S.A., Androulakis I.P. Metabolomic fingerprinting: challenges and opportunities. Crit Rev Biomed Eng 2013, 41:205-221.
-
(2013)
Crit Rev Biomed Eng
, vol.41
, pp. 205-221
-
-
Kosmides, A.K.1
Kamisoglu, K.2
Calvano, S.E.3
Corbett, S.A.4
Androulakis, I.P.5
-
6
-
-
84886247487
-
Metabolic signatures of GS-CHO cell clones associated with butyrate treatment and culture phase transition
-
Carinhas N., Duarte T.M., Barreiro L.C., Carrondo M.J.T., Alves P.M., Teixeira A.P. Metabolic signatures of GS-CHO cell clones associated with butyrate treatment and culture phase transition. Biotechnol Bioeng 2013, 110:3244-3257.
-
(2013)
Biotechnol Bioeng
, vol.110
, pp. 3244-3257
-
-
Carinhas, N.1
Duarte, T.M.2
Barreiro, L.C.3
Carrondo, M.J.T.4
Alves, P.M.5
Teixeira, A.P.6
-
7
-
-
84920709883
-
NMR-based metabolomics study of the biochemical relationship between sugarcane callus tissues and their respective nutrient culture media
-
Mahmud I., Thapaliya M., Boroujerdi A., Chowdhury K. NMR-based metabolomics study of the biochemical relationship between sugarcane callus tissues and their respective nutrient culture media. Anal Bioanal Chem 2014, 406:5997-6005.
-
(2014)
Anal Bioanal Chem
, vol.406
, pp. 5997-6005
-
-
Mahmud, I.1
Thapaliya, M.2
Boroujerdi, A.3
Chowdhury, K.4
-
8
-
-
84906070972
-
High throughput screening of enzyme activity with mass spectrometry imaging
-
de Rond T., Danielewicz M., Northen T.R. High throughput screening of enzyme activity with mass spectrometry imaging. Curr Opin Biotechnol 2015, 31:1-9.
-
(2015)
Curr Opin Biotechnol
, vol.31
, pp. 1-9
-
-
de Rond, T.1
Danielewicz, M.2
Northen, T.R.3
-
9
-
-
80051787832
-
Imaging mass spectrometry in microbiology
-
Watrous J.D., Dorrestein P.C. Imaging mass spectrometry in microbiology. Nat Rev Microbiol 2011, 9:683-694.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 683-694
-
-
Watrous, J.D.1
Dorrestein, P.C.2
-
10
-
-
84864212795
-
Laser-nanostructure interactions for ion production
-
Stolee J.A., Walker B.N., Zorba V., Russo R.E., Vertes A. Laser-nanostructure interactions for ion production. Phys Chem Chem Phys 2012, 14:8453-8471.
-
(2012)
Phys Chem Chem Phys
, vol.14
, pp. 8453-8471
-
-
Stolee, J.A.1
Walker, B.N.2
Zorba, V.3
Russo, R.E.4
Vertes, A.5
-
11
-
-
84896856869
-
Dynamic metabolic footprinting reveals the key components of metabolic network in yeast Saccharomyces cerevisiae
-
Chumnanpuen P., Hansen M.A.E., Smedsgaard J., Nielsen J. Dynamic metabolic footprinting reveals the key components of metabolic network in yeast Saccharomyces cerevisiae. Int J Genom 2014, 2014:1-14.
-
(2014)
Int J Genom
, vol.2014
, pp. 1-14
-
-
Chumnanpuen, P.1
Hansen, M.A.E.2
Smedsgaard, J.3
Nielsen, J.4
-
12
-
-
34247630099
-
Growth control of the eukaryote cell: a systems biology study in yeast
-
Castrillo J.I., Zeef L.A., Hoyle D.C., Zhang N., Hayes A., Gardner D.C.J., Cornell M.J., Petty J., Hakes L., Wardleworth L., et al. Growth control of the eukaryote cell: a systems biology study in yeast. J Biol 2007, 6.
-
(2007)
J Biol
, pp. 6
-
-
Castrillo, J.I.1
Zeef, L.A.2
Hoyle, D.C.3
Zhang, N.4
Hayes, A.5
Gardner, D.C.J.6
Cornell, M.J.7
Petty, J.8
Hakes, L.9
Wardleworth, L.10
-
13
-
-
84877650987
-
Comparative metabolic footprinting of a large number of commercial wine yeast strains in Chardonnay fermentations
-
Richter C.L., Dunn B., Sherlock G., Pugh T. Comparative metabolic footprinting of a large number of commercial wine yeast strains in Chardonnay fermentations. FEMS Yeast Res 2013, 13:394-410.
-
(2013)
FEMS Yeast Res
, vol.13
, pp. 394-410
-
-
Richter, C.L.1
Dunn, B.2
Sherlock, G.3
Pugh, T.4
-
14
-
-
80755125390
-
Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002
-
Baran R., Bowen B.P., Northen T.R. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Mol BioSyst 2011, 7:3200-3206.
-
(2011)
Mol BioSyst
, vol.7
, pp. 3200-3206
-
-
Baran, R.1
Bowen, B.P.2
Northen, T.R.3
-
15
-
-
78049521558
-
Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling
-
Baran R., Bowen B.P., Bouskill N.J., Brodie E.L., Yanonne S.M., Northen T.R. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Anal Chem 2010, 82:9034-9042.
-
(2010)
Anal Chem
, vol.82
, pp. 9034-9042
-
-
Baran, R.1
Bowen, B.P.2
Bouskill, N.J.3
Brodie, E.L.4
Yanonne, S.M.5
Northen, T.R.6
-
16
-
-
84887044924
-
Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics
-
Baran R., Ivanova N.N., Jose N., Garcia-Pichel F., Kyrpides N.C., Gugger M., Northen T.R. Functional genomics of novel secondary metabolites from diverse cyanobacteria using untargeted metabolomics. Marine Drugs 2013, 11:3617-3631.
-
(2013)
Marine Drugs
, vol.11
, pp. 3617-3631
-
-
Baran, R.1
Ivanova, N.N.2
Jose, N.3
Garcia-Pichel, F.4
Kyrpides, N.C.5
Gugger, M.6
Northen, T.R.7
-
17
-
-
81755163097
-
Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions
-
Deutschbauer A., Price M.N., Wetmore K.M., Shao W., Baumohl J.K., Xu Z., Nguyen M., Tamse R., Davis R.W., Arkin A.P. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. PLoS Genet 2011, 7.
-
(2011)
PLoS Genet
, pp. 7
-
-
Deutschbauer, A.1
Price, M.N.2
Wetmore, K.M.3
Shao, W.4
Baumohl, J.K.5
Xu, Z.6
Nguyen, M.7
Tamse, R.8
Davis, R.W.9
Arkin, A.P.10
-
18
-
-
84872528445
-
Metabolic footprinting of mutant libraries to map metabolite utilization to genotype
-
Baran R., Bowen B.P., Price M.N., Arkin A.P., Deutschbauer A.M., Northen T.R. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. ACS Chem Biol 2013, 8:189-199.
-
(2013)
ACS Chem Biol
, vol.8
, pp. 189-199
-
-
Baran, R.1
Bowen, B.P.2
Price, M.N.3
Arkin, A.P.4
Deutschbauer, A.M.5
Northen, T.R.6
-
19
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T., Ara T., Hasegawa M., Takai Y., Okumura Y., Baba M., Datsenko K.A., Tomita M., Wanner B.L., Mori H. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2006, 2.
-
(2006)
Mol Syst Biol
, pp. 2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
20
-
-
58849164048
-
Increased ergothioneine tissue concentrations in carriers of the Crohn's disease risk-associated 503F variant of the organic cation transporter OCTN1
-
Taubert D., Jung N., Goeser T., Schomig E. Increased ergothioneine tissue concentrations in carriers of the Crohn's disease risk-associated 503F variant of the organic cation transporter OCTN1. Gut 2008, 58:312-314.
-
(2008)
Gut
, vol.58
, pp. 312-314
-
-
Taubert, D.1
Jung, N.2
Goeser, T.3
Schomig, E.4
-
21
-
-
84907963589
-
The lethal cargo of Myxococcus xanthus outer membrane vesicles
-
Berleman J.E., Allen S., Danielewicz M., Remis J.P., Gorur A., Cunha J., Hadi M.Z., Zusman D.R., Northen T.R., Witkowska E., et al. The lethal cargo of Myxococcus xanthus outer membrane vesicles. Front Microbiol 2014, 5:1-11.
-
(2014)
Front Microbiol
, vol.5
, pp. 1-11
-
-
Berleman, J.E.1
Allen, S.2
Danielewicz, M.3
Remis, J.P.4
Gorur, A.5
Cunha, J.6
Hadi, M.Z.7
Zusman, D.R.8
Northen, T.R.9
Witkowska, E.10
-
22
-
-
85016473303
-
Exometabolomics approaches in studying the application of lignocellulosic biomass as fermentation feedstock
-
Zha Y., Punt P.J. Exometabolomics approaches in studying the application of lignocellulosic biomass as fermentation feedstock. Metabolites 2013, 3:119-143.
-
(2013)
Metabolites
, vol.3
, pp. 119-143
-
-
Zha, Y.1
Punt, P.J.2
-
23
-
-
84888032956
-
Comparative metabolic profiling revealed limitations in xylose-fermenting yeast during co-fermentation of glucose and xylose in the presence of inhibitors
-
Wang X., Jin M., Balan V.A., Jones D., Li X., Li B.-Z., Dale B.E., Yuan Y.-J. Comparative metabolic profiling revealed limitations in xylose-fermenting yeast during co-fermentation of glucose and xylose in the presence of inhibitors. Biotechnol Bioeng 2014, 111:152-164.
-
(2014)
Biotechnol Bioeng
, vol.111
, pp. 152-164
-
-
Wang, X.1
Jin, M.2
Balan, V.A.3
Jones, D.4
Li, X.5
Li, B.-Z.6
Dale, B.E.7
Yuan, Y.-J.8
-
24
-
-
84897390996
-
Identifying inhibitory compounds in lingocellulosic biomass hydrolysates using an exometabolomics approach
-
Zha Y., Westerhuis J.A., Muilwijk B., Overkamp K.M., Nijmeijer B.M., Coulier L., Smilde A.K., Punt P.J. Identifying inhibitory compounds in lingocellulosic biomass hydrolysates using an exometabolomics approach. BMC Biotechnol 2014, 14.
-
(2014)
BMC Biotechnol
, pp. 14
-
-
Zha, Y.1
Westerhuis, J.A.2
Muilwijk, B.3
Overkamp, K.M.4
Nijmeijer, B.M.5
Coulier, L.6
Smilde, A.K.7
Punt, P.J.8
-
25
-
-
84878238023
-
Effect of salts on the co-fermentation of glucose and xylose by a genetically engineered strain of Saccharomyces cerevisiae
-
Casey E., Mosier N.S., Adamec J., Stockdale Z., Ho N., Sedlak M. Effect of salts on the co-fermentation of glucose and xylose by a genetically engineered strain of Saccharomyces cerevisiae. Biotechnol Biofuel 2013, 6:1-10.
-
(2013)
Biotechnol Biofuel
, vol.6
, pp. 1-10
-
-
Casey, E.1
Mosier, N.S.2
Adamec, J.3
Stockdale, Z.4
Ho, N.5
Sedlak, M.6
-
26
-
-
78751638661
-
Engineering cyanobacteria to generate high-value products
-
Ducat D.C., Way J.C., Silver P.A. Engineering cyanobacteria to generate high-value products. Trends Biotechnol 2011, 29:95-103.
-
(2011)
Trends Biotechnol
, vol.29
, pp. 95-103
-
-
Ducat, D.C.1
Way, J.C.2
Silver, P.A.3
-
27
-
-
84892852311
-
1H-NMR protocol for exometabolome analysis of cultured mammalian cells
-
Duarte T.M., Carinhas N., Silva A.C., Alves P.M., Teixeira A.P. 1H-NMR protocol for exometabolome analysis of cultured mammalian cells. Methods Mol Biol 2014, 1104:237-247.
-
(2014)
Methods Mol Biol
, vol.1104
, pp. 237-247
-
-
Duarte, T.M.1
Carinhas, N.2
Silva, A.C.3
Alves, P.M.4
Teixeira, A.P.5
-
28
-
-
79951623012
-
Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations
-
Carneiro S., Villas-Boas S.G., Ferreira E.C., Rocha I. Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations. Mol BioSyst 2011, 7:899-910.
-
(2011)
Mol BioSyst
, vol.7
, pp. 899-910
-
-
Carneiro, S.1
Villas-Boas, S.G.2
Ferreira, E.C.3
Rocha, I.4
-
29
-
-
84872420422
-
Altered carbohydrate metabolism in glycogen synthase mutants of Synechococcus sp. strain PCC 7002: cell factories for soluble sugars
-
Xu Y., Guerra L.T., Li Z., Ludwig M., Dismukes G.C., Bryant D.A. Altered carbohydrate metabolism in glycogen synthase mutants of Synechococcus sp. strain PCC 7002: cell factories for soluble sugars. Metab Eng 2013, 16:56-67.
-
(2013)
Metab Eng
, vol.16
, pp. 56-67
-
-
Xu, Y.1
Guerra, L.T.2
Li, Z.3
Ludwig, M.4
Dismukes, G.C.5
Bryant, D.A.6
-
30
-
-
84899489010
-
Exometabolome analysis reveals hypoxia at the up-scaling of a Saccharomyces cerevisiae high-cell density fed-batch biopharmaceutical process
-
Fu Z., Verderame T.D., Leighton J.M., Sampey B.P., Appelbaum E.R., Patel P.S., Aon J.C. Exometabolome analysis reveals hypoxia at the up-scaling of a Saccharomyces cerevisiae high-cell density fed-batch biopharmaceutical process. Microb Cell Fact 2014, 13:1-22.
-
(2014)
Microb Cell Fact
, vol.13
, pp. 1-22
-
-
Fu, Z.1
Verderame, T.D.2
Leighton, J.M.3
Sampey, B.P.4
Appelbaum, E.R.5
Patel, P.S.6
Aon, J.C.7
-
31
-
-
83155191004
-
An exometabolomics approach to monitoring microbial contamination in microalgal fermentation processes by using metabolic footprint analysis
-
Sue T., Obolonkin V., Griffiths H., Villas-Boas S.G. An exometabolomics approach to monitoring microbial contamination in microalgal fermentation processes by using metabolic footprint analysis. Appl Environ Microbiol 2011, 77:7605-7610.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7605-7610
-
-
Sue, T.1
Obolonkin, V.2
Griffiths, H.3
Villas-Boas, S.G.4
-
32
-
-
84908349766
-
Metabolite footprinting of Plasmodium falciparum following exposure to Garcinia mangostana Linn. crude extract
-
Chaijoroenkul W., Mubaraki M.A., Ward S.A., Na-Bangchang K. Metabolite footprinting of Plasmodium falciparum following exposure to Garcinia mangostana Linn. crude extract. Exp Parasitol 2014, 145:80-86.
-
(2014)
Exp Parasitol
, vol.145
, pp. 80-86
-
-
Chaijoroenkul, W.1
Mubaraki, M.A.2
Ward, S.A.3
Na-Bangchang, K.4
-
33
-
-
84926301001
-
SciDB for high performance array-structured science data at NERSC
-
Yao Y., Bowen B.P., Barony D., Poznanski D. SciDB for high performance array-structured science data at NERSC. Comput Sci Eng 2015, 1-8. 10.1109/MCSE.2015.43.
-
(2015)
Comput Sci Eng
, pp. 1-8
-
-
Yao, Y.1
Bowen, B.P.2
Barony, D.3
Poznanski, D.4
-
34
-
-
77955277537
-
Dealing with the unknown: metabolomics and metabolite atlases
-
Bowen B.P., Northen T.R. Dealing with the unknown: metabolomics and metabolite atlases. J Am Soc Mass Spectrom 2010, 21.
-
(2010)
J Am Soc Mass Spectrom
, pp. 21
-
-
Bowen, B.P.1
Northen, T.R.2
-
35
-
-
84888309595
-
"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria
-
Louie K.B., Bowen B.P., Cheng X., Berleman J.E., Chakraborty R., Deutschbauer A., Arkin A., Northen T.R. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Anal Chem 2013, 85:10856-10862.
-
(2013)
Anal Chem
, vol.85
, pp. 10856-10862
-
-
Louie, K.B.1
Bowen, B.P.2
Cheng, X.3
Berleman, J.E.4
Chakraborty, R.5
Deutschbauer, A.6
Arkin, A.7
Northen, T.R.8
-
36
-
-
84887737912
-
OpenMSI: a high-performance web-based platform for mass spectrometry imaging
-
Rubel O., Greiner A., Cholia S., Louie K.B., Bethel E.W., Northen T.R., Bowen B.P. OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Anal Chem 2013, 85:10354-10361.
-
(2013)
Anal Chem
, vol.85
, pp. 10354-10361
-
-
Rubel, O.1
Greiner, A.2
Cholia, S.3
Louie, K.B.4
Bethel, E.W.5
Northen, T.R.6
Bowen, B.P.7
-
37
-
-
84883430904
-
Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome
-
Traxler M.F., Watrous J.D., Alexandrov T., Dorrestein P.C., Kolter R. Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome. mBio 2013, 4:1-12.
-
(2013)
mBio
, vol.4
, pp. 1-12
-
-
Traxler, M.F.1
Watrous, J.D.2
Alexandrov, T.3
Dorrestein, P.C.4
Kolter, R.5
-
38
-
-
84885329181
-
Liquid chromatography-mass spectrometry for metabolic footprinting of co-cultures of lactic and propionic acid bacteria
-
Honore A.H., Thorsen M., Skov T. Liquid chromatography-mass spectrometry for metabolic footprinting of co-cultures of lactic and propionic acid bacteria. Anal Bioanal Chem 2013, 405:8151-8170.
-
(2013)
Anal Bioanal Chem
, vol.405
, pp. 8151-8170
-
-
Honore, A.H.1
Thorsen, M.2
Skov, T.3
-
39
-
-
65249165397
-
Nanostructure initiator mass spectrometry: tissue imaging and direct biofluid analysis
-
Yanes O., Woo H.-K., Northen T.R., Oppenheimer S.R., Shriver L., Apon J., Estrada M.N., Potchoiba M.J., Steenwyk R.S., Manchester M., et al. Nanostructure initiator mass spectrometry: tissue imaging and direct biofluid analysis. Anal Chem 2009, 81:2969-2975.
-
(2009)
Anal Chem
, vol.81
, pp. 2969-2975
-
-
Yanes, O.1
Woo, H.-K.2
Northen, T.R.3
Oppenheimer, S.R.4
Shriver, L.5
Apon, J.6
Estrada, M.N.7
Potchoiba, M.J.8
Steenwyk, R.S.9
Manchester, M.10
-
40
-
-
17844398252
-
Tissue profiling by mass spectrometry: a review of methodology and applications
-
Caldwell R.L., Caprioli R.M. Tissue profiling by mass spectrometry: a review of methodology and applications. Mol Cell Proteom 2005, 4:394-401.
-
(2005)
Mol Cell Proteom
, vol.4
, pp. 394-401
-
-
Caldwell, R.L.1
Caprioli, R.M.2
-
41
-
-
84907424856
-
MALDI profiling and applications in medicine
-
Springer International Publishing, [Advances in Experimental Medicine and Biology, vol. 806], A.G. Woods, C.C. Darie (Eds.)
-
Dudley E. MALDI profiling and applications in medicine. Advancements of Mass Spectrometry in Biomedical Research 2014, 33-58. Springer International Publishing, [Advances in Experimental Medicine and Biology, vol. 806]. A.G. Woods, C.C. Darie (Eds.).
-
(2014)
Advancements of Mass Spectrometry in Biomedical Research
, pp. 33-58
-
-
Dudley, E.1
-
42
-
-
79951673520
-
MALDI imaging mass spectrometry of human tissue: method challenges and clinical perspectives
-
Seeley E.H., Caprioli R.M. MALDI imaging mass spectrometry of human tissue: method challenges and clinical perspectives. Trends Biotechnol 2011, 29:136-143.
-
(2011)
Trends Biotechnol
, vol.29
, pp. 136-143
-
-
Seeley, E.H.1
Caprioli, R.M.2
-
43
-
-
84921842154
-
Metabolic imaging using nanostructure-initiator mass spectrometry (NIMS)
-
Louie K.B., Northen T.R. Metabolic imaging using nanostructure-initiator mass spectrometry (NIMS). Methods Mol Biol 2014, 21:313-329.
-
(2014)
Methods Mol Biol
, vol.21
, pp. 313-329
-
-
Louie, K.B.1
Northen, T.R.2
-
44
-
-
84904876893
-
Emerging mass spectrometry techniques for the direct analysis of microbial colonies
-
Fang J., Dorrestein P.C. Emerging mass spectrometry techniques for the direct analysis of microbial colonies. Curr Opin Microbiol 2014, 19:120-129.
-
(2014)
Curr Opin Microbiol
, vol.19
, pp. 120-129
-
-
Fang, J.1
Dorrestein, P.C.2
-
45
-
-
67650803068
-
Geobiological investigations using secondary ion mass spectrometry: microanalysis of extant and paleo-microbial processes
-
Orphan V.J., House C.H. Geobiological investigations using secondary ion mass spectrometry: microanalysis of extant and paleo-microbial processes. Geobiology 2009, 7.
-
(2009)
Geobiology
, pp. 7
-
-
Orphan, V.J.1
House, C.H.2
-
46
-
-
84856138380
-
Multi-isotope imaging mass spectrometry quantifies stem cell division and metabolism
-
Steinhauser M., Bailey A.P., Senyo S.E., Guillermier C., Perlstein T.S., Gould A.P., Lee R.T., Lechene C.P. Multi-isotope imaging mass spectrometry quantifies stem cell division and metabolism. Nature 2012, 481:516-520.
-
(2012)
Nature
, vol.481
, pp. 516-520
-
-
Steinhauser, M.1
Bailey, A.P.2
Senyo, S.E.3
Guillermier, C.4
Perlstein, T.S.5
Gould, A.P.6
Lee, R.T.7
Lechene, C.P.8
-
47
-
-
84899686898
-
Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay
-
Mayali X., Weber P.K., Mabery S., Pett-Ridge J. Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay. PLoS One 2014, 9:e95842.
-
(2014)
PLoS One
, vol.9
, pp. e95842
-
-
Mayali, X.1
Weber, P.K.2
Mabery, S.3
Pett-Ridge, J.4
-
48
-
-
84920980000
-
Revisiting N2 fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach
-
Woebken D., Burow L.C., Behnam F., Mayali X., Schintlmeister A., Fleming E.D., Prufert-Bebout L., Singer S.W., López Cortés A., Hoehler T.M., et al. Revisiting N2 fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach. Int Soc Microb Ecol J 2014, 1-12.
-
(2014)
Int Soc Microb Ecol J
, pp. 1-12
-
-
Woebken, D.1
Burow, L.C.2
Behnam, F.3
Mayali, X.4
Schintlmeister, A.5
Fleming, E.D.6
Prufert-Bebout, L.7
Singer, S.W.8
López Cortés, A.9
Hoehler, T.M.10
-
49
-
-
46749149709
-
Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach
-
Fike D.A., Gammon C.L., Ziebis W., Orphan V.J. Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach. Int Soc Microb Ecol J 2008, 2:749-759.
-
(2008)
Int Soc Microb Ecol J
, vol.2
, pp. 749-759
-
-
Fike, D.A.1
Gammon, C.L.2
Ziebis, W.3
Orphan, V.J.4
-
50
-
-
84887777195
-
Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry
-
Watrous J.D., Roach P., Heath B., Alexandrov T., Laskin J., Dorrestein P.C. Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry. Anal Chem 2013, 85:10385-10391.
-
(2013)
Anal Chem
, vol.85
, pp. 10385-10391
-
-
Watrous, J.D.1
Roach, P.2
Heath, B.3
Alexandrov, T.4
Laskin, J.5
Dorrestein, P.C.6
-
51
-
-
35548992879
-
Clathrate nanostructures for mass spectrometry
-
Northen T.R., Yanes O., Northen M.T., Marrinucci D., Uritboonthai W., Apon J., Golledge S.L., Nordström A., Siuzdak G. Clathrate nanostructures for mass spectrometry. Nature 2007, 449:1033-1036.
-
(2007)
Nature
, vol.449
, pp. 1033-1036
-
-
Northen, T.R.1
Yanes, O.2
Northen, M.T.3
Marrinucci, D.4
Uritboonthai, W.5
Apon, J.6
Golledge, S.L.7
Nordström, A.8
Siuzdak, G.9
-
52
-
-
78650761774
-
Nanostructure-initiator mass spectrometry-metabolite analysis and imaging
-
Greving M.P., Patti G.J., Siuzdak G. Nanostructure-initiator mass spectrometry-metabolite analysis and imaging. Anal Chem 2011, 83:2-7.
-
(2011)
Anal Chem
, vol.83
, pp. 2-7
-
-
Greving, M.P.1
Patti, G.J.2
Siuzdak, G.3
-
53
-
-
84926301043
-
WebofMicrobes-a tool for linking microbes and environments
-
unpublished work
-
Kosina S., Greiner A., Jenkins S., Lau R., Baran R., Bowen B.P., Northen T.R. WebofMicrobes-a tool for linking microbes and environments. BMC Bioinform 2015, unpublished work.
-
(2015)
BMC Bioinform
-
-
Kosina, S.1
Greiner, A.2
Jenkins, S.3
Lau, R.4
Baran, R.5
Bowen, B.P.6
Northen, T.R.7
-
54
-
-
34547556301
-
LIPID MAPS online tools for lipid research
-
Fahy E., Sud M., Cotter D., Subramaniam S. LIPID MAPS online tools for lipid research. Nucleic Acids Res 2007, 35:W606-W612.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W606-W612
-
-
Fahy, E.1
Sud, M.2
Cotter, D.3
Subramaniam, S.4
-
55
-
-
84881476562
-
LipidBlast-in-silico tandem mass spectrometry database for lipid identification
-
Kind T., Liu K.-H., Lee D.Y., DeFelice B., Meissen J.K., Fiehn O. LipidBlast-in-silico tandem mass spectrometry database for lipid identification. Nat Methods 2013, 10:755-758.
-
(2013)
Nat Methods
, vol.10
, pp. 755-758
-
-
Kind, T.1
Liu, K.-H.2
Lee, D.Y.3
DeFelice, B.4
Meissen, J.K.5
Fiehn, O.6
-
56
-
-
32444432587
-
METLIN: a metabolite mass spectral database
-
Smith C.A., O'Maille G., Want E.J., Qin C., Trauger S.A., Brandon T.R., Custodio D.E., Abagyan R., Siuzdak G. METLIN: a metabolite mass spectral database. Therapeut Drug Monit 2005, 27:747-751.
-
(2005)
Therapeut Drug Monit
, vol.27
, pp. 747-751
-
-
Smith, C.A.1
O'Maille, G.2
Want, E.J.3
Qin, C.4
Trauger, S.A.5
Brandon, T.R.6
Custodio, D.E.7
Abagyan, R.8
Siuzdak, G.9
-
57
-
-
84866123900
-
An accelerated workflow for untargeted metabolomics using the METLIN database
-
Tautenhahn R., Cho K., Uritboonthai W., Zhu Z., Patti G.J., Siuzdak G. An accelerated workflow for untargeted metabolomics using the METLIN database. Nat Biotechnol 2012, 30:826-828.
-
(2012)
Nat Biotechnol
, vol.30
, pp. 826-828
-
-
Tautenhahn, R.1
Cho, K.2
Uritboonthai, W.3
Zhu, Z.4
Patti, G.J.5
Siuzdak, G.6
-
58
-
-
58149202163
-
HMDB: a knowledgebase for the human metabolome
-
Wishart D.S., Knox C., Guo A.C., Eisner R., Young N., Gautam B., Hau D.D., Psychogios N., Dong E., Bouatra S., et al. HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res 2009, 37:D603-D610.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D603-D610
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Eisner, R.4
Young, N.5
Gautam, B.6
Hau, D.D.7
Psychogios, N.8
Dong, E.9
Bouatra, S.10
-
59
-
-
77954439868
-
MassBank: a public repository for sharing mass spectral data for life sciences
-
Horai H., Arita M., Kanaya S., Nihei Y., Ikeda T., Suwa K., Ojima Y., Tanaka K., Tanaka S., Aoshima K., et al. MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom 2010, 45:703-714.
-
(2010)
J Mass Spectrom
, vol.45
, pp. 703-714
-
-
Horai, H.1
Arita, M.2
Kanaya, S.3
Nihei, Y.4
Ikeda, T.5
Suwa, K.6
Ojima, Y.7
Tanaka, K.8
Tanaka, S.9
Aoshima, K.10
-
60
-
-
84892985277
-
Bacterial social networks: structure and composition of Myxococcus xanthus outer membrane vesicle chains
-
Remis J.P., Wei D., Gorur A., Zemla M., Haraga J., Allen S., Witkowska H.E., Costerton J.W., Berleman J.E., Auer M. Bacterial social networks: structure and composition of Myxococcus xanthus outer membrane vesicle chains. Env Microbiol 2014, 16:598-610.
-
(2014)
Env Microbiol
, vol.16
, pp. 598-610
-
-
Remis, J.P.1
Wei, D.2
Gorur, A.3
Zemla, M.4
Haraga, J.5
Allen, S.6
Witkowska, H.E.7
Costerton, J.W.8
Berleman, J.E.9
Auer, M.10
-
61
-
-
84865288536
-
Interkingdom metabolic transformations captured by microbial imaging mass spectrometry
-
Moree W.J., Phelan V.V., Wu C.-H., Bandeira N., Cornett D.S., Duggan B.M., Dorrestein P.C. Interkingdom metabolic transformations captured by microbial imaging mass spectrometry. Proc Natl Acad Sci 2012, 109:13811-13816.
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 13811-13816
-
-
Moree, W.J.1
Phelan, V.V.2
Wu, C.-H.3
Bandeira, N.4
Cornett, D.S.5
Duggan, B.M.6
Dorrestein, P.C.7
|