-
2
-
-
33751234806
-
Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes
-
DOI 10.1098/rstb.2006.1928
-
Polz MF, Hunt DE, Preheim SP, Weinreich DM (2006) Patterns and mechanisms of genetic and phenotypic differentiation in marine microbes. Phil Trans R Soc B 361: 2009-2021. (Pubitemid 44787035)
-
(2006)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.361
, Issue.1475
, pp. 2009-2021
-
-
Polz, M.F.1
Hunt, D.E.2
Preheim, S.P.3
Weinreich, D.M.4
-
3
-
-
0025643605
-
Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: Implications for carbon transfer in planktonic communities
-
Suttle C, Fuhrman JA, Capone DG (1990) Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: implications for carbon transfer in planktonic communities. Limnol Oceanogr 35: 424-433.
-
(1990)
Limnol Oceanogr
, vol.35
, pp. 424-433
-
-
Suttle, C.1
Fuhrman, J.A.2
Capone, D.G.3
-
4
-
-
70350052417
-
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
-
Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
De La Torre, J.R.4
Stahl, D.A.5
-
5
-
-
33644965223
-
Concentration-dependent patterns of leucine incorporation by coastal picoplankton
-
Alonso C, Pernthaler J (2006) Concentration-dependent patterns of leucine incorporation by coastal picoplankton. Appl Environ Microbiol 72: 2141-2147.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 2141-2147
-
-
Alonso, C.1
Pernthaler, J.2
-
6
-
-
0032076192
-
Microbial control of oceanic carbon flux: The plot thickens
-
Azam F (1998) Microbial control of oceanic carbon flux: the plot thickens. Science 280: 694-696.
-
(1998)
Science
, vol.280
, pp. 694-696
-
-
Azam, F.1
-
7
-
-
0001622977
-
Multiphasic uptake of D-glucose by an oligotrophic marine bacterium
-
Nissen H, Nissen P, Azam F (1984) Multiphasic uptake of D-glucose by an oligotrophic marine bacterium. Mar Ecol Prog Ser 16: 155-160.
-
(1984)
Mar Ecol Prog Ser
, vol.16
, pp. 155-160
-
-
Nissen, H.1
Nissen, P.2
Azam, F.3
-
8
-
-
41949138474
-
Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches
-
DOI 10.1073/pnas.0709765105
-
Stocker R, Seymour JR, Samadani A, Hunt DE, Polz MF (2008) Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches. Proc Natl Acad Sci USA 105: 4209-4214. (Pubitemid 351754359)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.11
, pp. 4209-4214
-
-
Stocker, R.1
Seymour, J.R.2
Samadani, A.3
Hunt, D.E.4
Polz, M.F.5
-
9
-
-
0034917688
-
Oligotrophs versus copiotrophs
-
Koch AL (2001) Oligotrophs versus copiotrophs. BioEssays 23: 657-661.
-
(2001)
BioEssays
, vol.23
, pp. 657-661
-
-
Koch, A.L.1
-
10
-
-
0037180794
-
SAR11 clade dominates ocean surface bacterioplankton communities
-
DOI 10.1038/nature01240
-
Morris RM, Rappe MS, Connon SA, Vergin KL, Siebold WA, et al. (2002) SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420: 806-810. (Pubitemid 36019626)
-
(2002)
Nature
, vol.420
, Issue.6917
, pp. 806-810
-
-
Morris, R.M.1
Rappe, M.S.2
Connon, S.A.3
Vergin, K.L.4
Siebold, W.A.5
Carlson, C.A.6
Giovannoni, S.J.7
-
11
-
-
70349458100
-
The genomic basis of trophic strategy in marine bacteria
-
Lauro FM, McDougald D, Thomas T, Williams TJ, Egan S, et al. (2009) The genomic basis of trophic strategy in marine bacteria. Proc Natl Acad Sci USA 106: 15527-15533.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 15527-15533
-
-
Lauro, F.M.1
McDougald, D.2
Thomas, T.3
Williams, T.J.4
Egan, S.5
-
12
-
-
0018935706
-
Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California
-
Fuhrman JA, Azam F (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Canada, Antarctica, and California, USA. Appl Environ Microbiol 39: 1085-1095. (Pubitemid 10001970)
-
(1980)
Applied and Environmental Microbiology
, vol.39
, Issue.6
, pp. 1085-1095
-
-
Fuhrman, J.A.1
Azam, F.2
-
13
-
-
77952671338
-
Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
-
Poretsky RS, Sun S, Mou X, Moran MA (2010) Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon. Envir Microbiol 12: 616-627.
-
(2010)
Envir Microbiol
, vol.12
, pp. 616-627
-
-
Poretsky, R.S.1
Sun, S.2
Mou, X.3
Moran, M.A.4
-
14
-
-
0027799396
-
Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria
-
Jørgensen NOG, Kroer N, Coffin RB, Yang X-H, Lee C (1993) Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria. Mar Ecol Prog Ser 98: 135-148. (Pubitemid 24413534)
-
(1993)
Marine Ecology Progress Series
, vol.98
, Issue.1-2
, pp. 135-148
-
-
Jorgensen, N.O.G.1
Kroer, N.2
Coffin, R.B.3
Xiao-Hua, Y.4
Lee, C.5
-
15
-
-
84986853291
-
Bacterial uptake of dissolved free and combined amino acids in estuarine water
-
Coffin RB (1989) Bacterial uptake of dissolved free and combined amino acids in estuarine water. Limnol Oceanogr 34: 531-542.
-
(1989)
Limnol Oceanogr
, vol.34
, pp. 531-542
-
-
Coffin, R.B.1
-
16
-
-
23844446418
-
Genetics: Genome streamlining in a cosmopolitan oceanic bacterium
-
DOI 10.1126/science.1114057
-
Giovannoni SJ, Tripp HJ, Givan S, Podar M, Vergin KL, et al. (2005) Genome streamlining in a cosmopolitan oceanic bacterium. Science 309: 1242-1245. (Pubitemid 41170917)
-
(2005)
Science
, vol.309
, Issue.5738
, pp. 1242-1245
-
-
Giovannoni, S.J.1
Tripp, H.J.2
Givan, S.3
Podar, M.4
Vergin, K.L.5
Baptista, D.6
Bibbs, L.7
Eads, J.8
Richardson, T.H.9
Noordewier, M.10
Rappe, M.S.11
Short, J.M.12
Carrington, J.C.13
Mathur, E.J.14
-
17
-
-
78149272458
-
Genomic and functional adaptation in surface ocean planktonic prokaryotes
-
Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, et al. (2010) Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 468: 60-66.
-
(2010)
Nature
, vol.468
, pp. 60-66
-
-
Yooseph, S.1
Nealson, K.H.2
Rusch, D.B.3
McCrow, J.P.4
Dupont, C.L.5
-
18
-
-
79955063146
-
Environmental proteomics of microbial plankton in a highly productive coastal upwelling system
-
Sowell SM, Abraham PE, Shah M, Verberkmoes NC, Smith DP, et al. (2011) Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J 5: 856-865.
-
(2011)
ISME J
, vol.5
, pp. 856-865
-
-
Sowell, S.M.1
Abraham, P.E.2
Shah, M.3
Verberkmoes, N.C.4
Smith, D.P.5
-
19
-
-
3242797571
-
Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
-
DOI 10.1128/AEM.70.7.4129-4135.2004
-
Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL (2004) Contribution of SAR11 Bacteria to Dissolved Dimethylsulfoniopropionate and Amino Acid Uptake in the North Atlantic Ocean. Appl Environ Microbiol 70: 4129-4135. (Pubitemid 38969757)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.7
, pp. 4129-4135
-
-
Malmstrom, R.R.1
Kiene, R.P.2
Cottrell, M.T.3
Kirchman, D.L.4
-
20
-
-
34249903107
-
Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in Northwestern Mediterranean coastal waters
-
DOI 10.1128/AEM.02627-06
-
Alonso-Sáez L, Gasol JM (2007) Seasonal Variations in the Contributions of Different Bacterial Groups to the Uptake of Low-Molecular-Weight Compounds in Northwestern Mediterranean Coastal Waters. Appl Environ Microbiol 73: 3528-3535. (Pubitemid 46871441)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.11
, pp. 3528-3535
-
-
Alonso-Saez, L.1
Gasol, J.M.2
-
21
-
-
84861349503
-
High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use
-
Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich P, et al. (2012) High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use ISME J 6: 1210-1221.
-
(2012)
ISME J
, vol.6
, pp. 1210-1221
-
-
Mayali, X.1
Weber, P.K.2
Brodie, E.L.3
Mabery, S.4
Hoeprich, P.5
-
22
-
-
0032846163
-
Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array
-
DOI 10.1038/13664
-
Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, et al. (1999) Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotech 17: 974-978. (Pubitemid 29474852)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 974-978
-
-
Singh-Gasson, S.1
Green, R.D.2
Yue, Y.3
Nelson, C.4
Blattner, F.5
Sussman, M.R.6
Cerrina, F.7
-
25
-
-
77952674525
-
Genome characteristics of a generalist marine bacterial lineage
-
Newton RJ, Griffin LE, Bowles KM, Meile C, Gifford S, et al. (2010) Genome characteristics of a generalist marine bacterial lineage. ISME J 4: 784-798.
-
(2010)
ISME J
, vol.4
, pp. 784-798
-
-
Newton, R.J.1
Griffin, L.E.2
Bowles, K.M.3
Meile, C.4
Gifford, S.5
-
26
-
-
0037435039
-
Low fractions of active bacteria in natural aquatic communities?
-
Smith EM, del Giorgio PA (2003) Low fractions of active bacteria in natural aquatic communities? Aquat Microb Ecol 31: 203-208. (Pubitemid 36391595)
-
(2003)
Aquatic Microbial Ecology
, vol.31
, Issue.2
, pp. 203-208
-
-
Smith, E.M.1
Del, G.P.A.2
-
27
-
-
76649097001
-
Critical evaluation of the volumetric "bottle effect" on microbial batch growth
-
Hammes F, Vital M, Egli T (2010) Critical evaluation of the volumetric "bottle effect" on microbial batch growth. Appl Environ Microbiol 76: 1278-1281.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1278-1281
-
-
Hammes, F.1
Vital, M.2
Egli, T.3
-
28
-
-
0033754085
-
Succession of Pelagic Marine Bacteria during Enrichment: A Close Look at Cultivation-Induced Shifts
-
Eilers H, Pernthaler J, Amann R (2000) Succession of Pelagic Marine Bacteria during Enrichment: a Close Look at Cultivation-Induced Shifts. Appl Environ Microbiol 66: 4634-4640.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4634-4640
-
-
Eilers, H.1
Pernthaler, J.2
Amann, R.3
-
29
-
-
0033950632
-
Successional changes in the genetic diversity of a marine bacterial assemblage during confinement
-
DOI 10.1007/s002039900121
-
Schafer H, Servais P, Muyzer G (2000) Successional changes in the genetic diversity of a marine bacterial assemblage during confinement. Arch Microbiol 173: 138-145. (Pubitemid 30080557)
-
(2000)
Archives of Microbiology
, vol.173
, Issue.2
, pp. 138-145
-
-
Schafer, H.1
Servais, P.2
Muyzer, G.3
-
30
-
-
0030620505
-
Regulation of Bacterial Growth Rates by Dissolved Organic Carbon and Temperature in the Equatorial Pacific Ocean
-
Kirchman DL, Rich JH (1997) Regulation of Bacterial Growth Rates by Dissolved Organic Carbon and Temperature in the Equatorial Pacific Ocean. Microb Ecol 33: 11-20.
-
(1997)
Microb Ecol
, vol.33
, pp. 11-20
-
-
Kirchman, D.L.1
Rich, J.H.2
-
31
-
-
66049089612
-
On the origin of prokaryotic species
-
Doolittle WF, Zhaxybayeva O (2009) On the origin of prokaryotic species. Genome Res 19: 744-756.
-
(2009)
Genome Res
, vol.19
, pp. 744-756
-
-
Doolittle, W.F.1
Zhaxybayeva, O.2
-
32
-
-
0027068676
-
Characteristics of suspended particles at an 11-hour anchor station in San Francisco Bay, California
-
Kranck K, Milligan TG (1992) Characteristics of suspended particles at an 11-hour anchor station in San Francisco Bay, California. Journal of Geophysical Research: Oceans 97: 11373-11382.
-
(1992)
Journal of Geophysical Research: Oceans
, vol.97
, pp. 11373-11382
-
-
Kranck, K.1
Milligan, T.G.2
-
33
-
-
0034737224
-
Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California
-
Hollibaugh JT, Wong PS, Murrell MC (2000) Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California. Aquat Microb Ecol 21: 103-114. (Pubitemid 34235196)
-
(2000)
Aquatic Microbial Ecology
, vol.21
, Issue.2
, pp. 103-114
-
-
Hollibaugh, J.T.1
Wong, P.S.2
Murrell, M.C.3
-
34
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
35
-
-
84860488672
-
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
-
Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, et al. (2012) Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336: 608-611.
-
(2012)
Science
, vol.336
, pp. 608-611
-
-
Teeling, H.1
Fuchs, B.M.2
Becher, D.3
Klockow, C.4
Gardebrecht, A.5
-
36
-
-
34249669794
-
DON as a source of bioavailable nitrogen for phytoplankton
-
Bronk DA, See JH, Bradley P, Killberg L (2007) DON as a source of bioavailable nitrogen for phytoplankton. Biogeosciences 4: 283-296. (Pubitemid 46827590)
-
(2007)
Biogeosciences
, vol.4
, Issue.3
, pp. 283-296
-
-
Bronk, D.A.1
See, J.H.2
Bradley, P.3
Killberg, L.4
-
37
-
-
0141674534
-
Extracellular enzyme activity and uptake of carbon and nitrogen along an estuarine salinity and nutrient gradient
-
Mulholland MR, Lee C, Glibert PM (2003) Extracellular enzyme activity and uptake of carbon and nitrogen along an estuarine salinity and nutrient gradient. Mar Ecol Prog Ser 258: 3-17. (Pubitemid 37144210)
-
(2003)
Marine Ecology Progress Series
, vol.258
, pp. 3-17
-
-
Mulholland, M.R.1
Lee, C.2
Glibert, P.M.3
-
38
-
-
0020041977
-
Relationship between temperature and growth rate of bacterial cultures
-
Ratkowsky DA, Olley J, McMeekin TA, Ball A (1982) Relationship between temperature and growth rate of bacterial cultures. J Bacteriol 149: 1-5. (Pubitemid 12191324)
-
(1982)
Journal of Bacteriology
, vol.149
, Issue.1
, pp. 1-5
-
-
Ratkowsky, D.A.1
Olley, J.2
McMeekin, T.A.3
Ball, A.4
-
39
-
-
44449178480
-
Resource partitioning and sympatric differentiation among closely related bacterioplankton
-
DOI 10.1126/science.1157890
-
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, et al. (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085. (Pubitemid 351929550)
-
(2008)
Science
, vol.320
, Issue.5879
, pp. 1081-1085
-
-
Hunt, D.E.1
David, L.A.2
Gevers, D.3
Preheim, S.P.4
Alm, E.J.5
Polz, M.F.6
-
40
-
-
84876878239
-
In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake
-
Salcher MM, Posch T, Pernthaler J (2013) In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. ISME J 7: 896-907.
-
(2013)
ISME J
, vol.7
, pp. 896-907
-
-
Salcher, M.M.1
Posch, T.2
Pernthaler, J.3
-
41
-
-
84878669858
-
Toward a mechanistic approach to modeling bacterial DOC pathways: A review
-
Jiao N, Azam F, editors Washington D.C.: Science/AAAS
-
Eichinger M, Poggiale JC, Sempéré R (2011) Toward a mechanistic approach to modeling bacterial DOC pathways: a review. In: Jiao N, Azam F, editors. Microbial carbon pump in the ocean. Washington D.C.: Science/AAAS.
-
(2011)
Microbial Carbon Pump in the Ocean
-
-
Eichinger, M.1
Poggiale, J.C.2
Sempéré, R.3
-
42
-
-
33644949567
-
The impacts of climate change in coastal marine systems
-
Harley CDG, Randall Hughes A, Hultgren KM, Miner BG, Sorte CJB, et al. (2006) The impacts of climate change in coastal marine systems. Ecol Lett 9: 228-241.
-
(2006)
Ecol Lett
, vol.9
, pp. 228-241
-
-
Harley, C.D.G.1
Randall Hughes, A.2
Hultgren, K.M.3
Miner, B.G.4
Sorte, C.J.B.5
-
43
-
-
79953022302
-
The impact of microbial metabolism on marine dissolved organic matter
-
Kujawinski EB (2011) The impact of microbial metabolism on marine dissolved organic matter. Ann Rev Mar Sci 3: 567-599.
-
(2011)
Ann Rev Mar Sci
, vol.3
, pp. 567-599
-
-
Kujawinski, E.B.1
|