메뉴 건너뛰기




Volumn 9, Issue 4, 2014, Pages

Phylogenetic patterns in the microbial response to resource availability: Amino acid incorporation in San Francisco Bay

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; DNA 16S; RNA; RIBOSOME DNA;

EID: 84899686898     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0095842     Document Type: Article
Times cited : (31)

References (43)
  • 3
    • 0025643605 scopus 로고
    • Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: Implications for carbon transfer in planktonic communities
    • Suttle C, Fuhrman JA, Capone DG (1990) Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: implications for carbon transfer in planktonic communities. Limnol Oceanogr 35: 424-433.
    • (1990) Limnol Oceanogr , vol.35 , pp. 424-433
    • Suttle, C.1    Fuhrman, J.A.2    Capone, D.G.3
  • 4
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
    • Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA (2009) Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    De La Torre, J.R.4    Stahl, D.A.5
  • 5
    • 33644965223 scopus 로고    scopus 로고
    • Concentration-dependent patterns of leucine incorporation by coastal picoplankton
    • Alonso C, Pernthaler J (2006) Concentration-dependent patterns of leucine incorporation by coastal picoplankton. Appl Environ Microbiol 72: 2141-2147.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2141-2147
    • Alonso, C.1    Pernthaler, J.2
  • 6
    • 0032076192 scopus 로고    scopus 로고
    • Microbial control of oceanic carbon flux: The plot thickens
    • Azam F (1998) Microbial control of oceanic carbon flux: the plot thickens. Science 280: 694-696.
    • (1998) Science , vol.280 , pp. 694-696
    • Azam, F.1
  • 7
    • 0001622977 scopus 로고
    • Multiphasic uptake of D-glucose by an oligotrophic marine bacterium
    • Nissen H, Nissen P, Azam F (1984) Multiphasic uptake of D-glucose by an oligotrophic marine bacterium. Mar Ecol Prog Ser 16: 155-160.
    • (1984) Mar Ecol Prog Ser , vol.16 , pp. 155-160
    • Nissen, H.1    Nissen, P.2    Azam, F.3
  • 9
    • 0034917688 scopus 로고    scopus 로고
    • Oligotrophs versus copiotrophs
    • Koch AL (2001) Oligotrophs versus copiotrophs. BioEssays 23: 657-661.
    • (2001) BioEssays , vol.23 , pp. 657-661
    • Koch, A.L.1
  • 12
    • 0018935706 scopus 로고
    • Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California
    • Fuhrman JA, Azam F (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Canada, Antarctica, and California, USA. Appl Environ Microbiol 39: 1085-1095. (Pubitemid 10001970)
    • (1980) Applied and Environmental Microbiology , vol.39 , Issue.6 , pp. 1085-1095
    • Fuhrman, J.A.1    Azam, F.2
  • 13
    • 77952671338 scopus 로고    scopus 로고
    • Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
    • Poretsky RS, Sun S, Mou X, Moran MA (2010) Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon. Envir Microbiol 12: 616-627.
    • (2010) Envir Microbiol , vol.12 , pp. 616-627
    • Poretsky, R.S.1    Sun, S.2    Mou, X.3    Moran, M.A.4
  • 14
    • 0027799396 scopus 로고
    • Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria
    • Jørgensen NOG, Kroer N, Coffin RB, Yang X-H, Lee C (1993) Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria. Mar Ecol Prog Ser 98: 135-148. (Pubitemid 24413534)
    • (1993) Marine Ecology Progress Series , vol.98 , Issue.1-2 , pp. 135-148
    • Jorgensen, N.O.G.1    Kroer, N.2    Coffin, R.B.3    Xiao-Hua, Y.4    Lee, C.5
  • 15
    • 84986853291 scopus 로고
    • Bacterial uptake of dissolved free and combined amino acids in estuarine water
    • Coffin RB (1989) Bacterial uptake of dissolved free and combined amino acids in estuarine water. Limnol Oceanogr 34: 531-542.
    • (1989) Limnol Oceanogr , vol.34 , pp. 531-542
    • Coffin, R.B.1
  • 17
    • 78149272458 scopus 로고    scopus 로고
    • Genomic and functional adaptation in surface ocean planktonic prokaryotes
    • Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, et al. (2010) Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature 468: 60-66.
    • (2010) Nature , vol.468 , pp. 60-66
    • Yooseph, S.1    Nealson, K.H.2    Rusch, D.B.3    McCrow, J.P.4    Dupont, C.L.5
  • 18
    • 79955063146 scopus 로고    scopus 로고
    • Environmental proteomics of microbial plankton in a highly productive coastal upwelling system
    • Sowell SM, Abraham PE, Shah M, Verberkmoes NC, Smith DP, et al. (2011) Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J 5: 856-865.
    • (2011) ISME J , vol.5 , pp. 856-865
    • Sowell, S.M.1    Abraham, P.E.2    Shah, M.3    Verberkmoes, N.C.4    Smith, D.P.5
  • 19
    • 3242797571 scopus 로고    scopus 로고
    • Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic Ocean
    • DOI 10.1128/AEM.70.7.4129-4135.2004
    • Malmstrom RR, Kiene RP, Cottrell MT, Kirchman DL (2004) Contribution of SAR11 Bacteria to Dissolved Dimethylsulfoniopropionate and Amino Acid Uptake in the North Atlantic Ocean. Appl Environ Microbiol 70: 4129-4135. (Pubitemid 38969757)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.7 , pp. 4129-4135
    • Malmstrom, R.R.1    Kiene, R.P.2    Cottrell, M.T.3    Kirchman, D.L.4
  • 20
    • 34249903107 scopus 로고    scopus 로고
    • Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in Northwestern Mediterranean coastal waters
    • DOI 10.1128/AEM.02627-06
    • Alonso-Sáez L, Gasol JM (2007) Seasonal Variations in the Contributions of Different Bacterial Groups to the Uptake of Low-Molecular-Weight Compounds in Northwestern Mediterranean Coastal Waters. Appl Environ Microbiol 73: 3528-3535. (Pubitemid 46871441)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.11 , pp. 3528-3535
    • Alonso-Saez, L.1    Gasol, J.M.2
  • 21
    • 84861349503 scopus 로고    scopus 로고
    • High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use
    • Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich P, et al. (2012) High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use ISME J 6: 1210-1221.
    • (2012) ISME J , vol.6 , pp. 1210-1221
    • Mayali, X.1    Weber, P.K.2    Brodie, E.L.3    Mabery, S.4    Hoeprich, P.5
  • 25
    • 77952674525 scopus 로고    scopus 로고
    • Genome characteristics of a generalist marine bacterial lineage
    • Newton RJ, Griffin LE, Bowles KM, Meile C, Gifford S, et al. (2010) Genome characteristics of a generalist marine bacterial lineage. ISME J 4: 784-798.
    • (2010) ISME J , vol.4 , pp. 784-798
    • Newton, R.J.1    Griffin, L.E.2    Bowles, K.M.3    Meile, C.4    Gifford, S.5
  • 26
    • 0037435039 scopus 로고    scopus 로고
    • Low fractions of active bacteria in natural aquatic communities?
    • Smith EM, del Giorgio PA (2003) Low fractions of active bacteria in natural aquatic communities? Aquat Microb Ecol 31: 203-208. (Pubitemid 36391595)
    • (2003) Aquatic Microbial Ecology , vol.31 , Issue.2 , pp. 203-208
    • Smith, E.M.1    Del, G.P.A.2
  • 27
    • 76649097001 scopus 로고    scopus 로고
    • Critical evaluation of the volumetric "bottle effect" on microbial batch growth
    • Hammes F, Vital M, Egli T (2010) Critical evaluation of the volumetric "bottle effect" on microbial batch growth. Appl Environ Microbiol 76: 1278-1281.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 1278-1281
    • Hammes, F.1    Vital, M.2    Egli, T.3
  • 28
    • 0033754085 scopus 로고    scopus 로고
    • Succession of Pelagic Marine Bacteria during Enrichment: A Close Look at Cultivation-Induced Shifts
    • Eilers H, Pernthaler J, Amann R (2000) Succession of Pelagic Marine Bacteria during Enrichment: a Close Look at Cultivation-Induced Shifts. Appl Environ Microbiol 66: 4634-4640.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4634-4640
    • Eilers, H.1    Pernthaler, J.2    Amann, R.3
  • 29
    • 0033950632 scopus 로고    scopus 로고
    • Successional changes in the genetic diversity of a marine bacterial assemblage during confinement
    • DOI 10.1007/s002039900121
    • Schafer H, Servais P, Muyzer G (2000) Successional changes in the genetic diversity of a marine bacterial assemblage during confinement. Arch Microbiol 173: 138-145. (Pubitemid 30080557)
    • (2000) Archives of Microbiology , vol.173 , Issue.2 , pp. 138-145
    • Schafer, H.1    Servais, P.2    Muyzer, G.3
  • 30
    • 0030620505 scopus 로고    scopus 로고
    • Regulation of Bacterial Growth Rates by Dissolved Organic Carbon and Temperature in the Equatorial Pacific Ocean
    • Kirchman DL, Rich JH (1997) Regulation of Bacterial Growth Rates by Dissolved Organic Carbon and Temperature in the Equatorial Pacific Ocean. Microb Ecol 33: 11-20.
    • (1997) Microb Ecol , vol.33 , pp. 11-20
    • Kirchman, D.L.1    Rich, J.H.2
  • 31
    • 66049089612 scopus 로고    scopus 로고
    • On the origin of prokaryotic species
    • Doolittle WF, Zhaxybayeva O (2009) On the origin of prokaryotic species. Genome Res 19: 744-756.
    • (2009) Genome Res , vol.19 , pp. 744-756
    • Doolittle, W.F.1    Zhaxybayeva, O.2
  • 32
    • 0027068676 scopus 로고
    • Characteristics of suspended particles at an 11-hour anchor station in San Francisco Bay, California
    • Kranck K, Milligan TG (1992) Characteristics of suspended particles at an 11-hour anchor station in San Francisco Bay, California. Journal of Geophysical Research: Oceans 97: 11373-11382.
    • (1992) Journal of Geophysical Research: Oceans , vol.97 , pp. 11373-11382
    • Kranck, K.1    Milligan, T.G.2
  • 33
    • 0034737224 scopus 로고    scopus 로고
    • Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California
    • Hollibaugh JT, Wong PS, Murrell MC (2000) Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California. Aquat Microb Ecol 21: 103-114. (Pubitemid 34235196)
    • (2000) Aquatic Microbial Ecology , vol.21 , Issue.2 , pp. 103-114
    • Hollibaugh, J.T.1    Wong, P.S.2    Murrell, M.C.3
  • 34
    • 0036207009 scopus 로고    scopus 로고
    • The ecology of Cytophaga-Flavobacteria in aquatic environments
    • Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 91-100
    • Kirchman, D.L.1
  • 35
    • 84860488672 scopus 로고    scopus 로고
    • Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
    • Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, et al. (2012) Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336: 608-611.
    • (2012) Science , vol.336 , pp. 608-611
    • Teeling, H.1    Fuchs, B.M.2    Becher, D.3    Klockow, C.4    Gardebrecht, A.5
  • 36
    • 34249669794 scopus 로고    scopus 로고
    • DON as a source of bioavailable nitrogen for phytoplankton
    • Bronk DA, See JH, Bradley P, Killberg L (2007) DON as a source of bioavailable nitrogen for phytoplankton. Biogeosciences 4: 283-296. (Pubitemid 46827590)
    • (2007) Biogeosciences , vol.4 , Issue.3 , pp. 283-296
    • Bronk, D.A.1    See, J.H.2    Bradley, P.3    Killberg, L.4
  • 37
    • 0141674534 scopus 로고    scopus 로고
    • Extracellular enzyme activity and uptake of carbon and nitrogen along an estuarine salinity and nutrient gradient
    • Mulholland MR, Lee C, Glibert PM (2003) Extracellular enzyme activity and uptake of carbon and nitrogen along an estuarine salinity and nutrient gradient. Mar Ecol Prog Ser 258: 3-17. (Pubitemid 37144210)
    • (2003) Marine Ecology Progress Series , vol.258 , pp. 3-17
    • Mulholland, M.R.1    Lee, C.2    Glibert, P.M.3
  • 38
    • 0020041977 scopus 로고
    • Relationship between temperature and growth rate of bacterial cultures
    • Ratkowsky DA, Olley J, McMeekin TA, Ball A (1982) Relationship between temperature and growth rate of bacterial cultures. J Bacteriol 149: 1-5. (Pubitemid 12191324)
    • (1982) Journal of Bacteriology , vol.149 , Issue.1 , pp. 1-5
    • Ratkowsky, D.A.1    Olley, J.2    McMeekin, T.A.3    Ball, A.4
  • 39
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • DOI 10.1126/science.1157890
    • Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, et al. (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081-1085. (Pubitemid 351929550)
    • (2008) Science , vol.320 , Issue.5879 , pp. 1081-1085
    • Hunt, D.E.1    David, L.A.2    Gevers, D.3    Preheim, S.P.4    Alm, E.J.5    Polz, M.F.6
  • 40
    • 84876878239 scopus 로고    scopus 로고
    • In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake
    • Salcher MM, Posch T, Pernthaler J (2013) In situ substrate preferences of abundant bacterioplankton populations in a prealpine freshwater lake. ISME J 7: 896-907.
    • (2013) ISME J , vol.7 , pp. 896-907
    • Salcher, M.M.1    Posch, T.2    Pernthaler, J.3
  • 41
    • 84878669858 scopus 로고    scopus 로고
    • Toward a mechanistic approach to modeling bacterial DOC pathways: A review
    • Jiao N, Azam F, editors Washington D.C.: Science/AAAS
    • Eichinger M, Poggiale JC, Sempéré R (2011) Toward a mechanistic approach to modeling bacterial DOC pathways: a review. In: Jiao N, Azam F, editors. Microbial carbon pump in the ocean. Washington D.C.: Science/AAAS.
    • (2011) Microbial Carbon Pump in the Ocean
    • Eichinger, M.1    Poggiale, J.C.2    Sempéré, R.3
  • 43
    • 79953022302 scopus 로고    scopus 로고
    • The impact of microbial metabolism on marine dissolved organic matter
    • Kujawinski EB (2011) The impact of microbial metabolism on marine dissolved organic matter. Ann Rev Mar Sci 3: 567-599.
    • (2011) Ann Rev Mar Sci , vol.3 , pp. 567-599
    • Kujawinski, E.B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.