-
1
-
-
77955042462
-
From complete genome sequence to 'complete' understanding?
-
Galperin, M. Y. and Koonin, E. V. (2010) From complete genome sequence to 'complete' understanding? Trends Biotechnol. 28, 398-406
-
(2010)
Trends Biotechnol.
, vol.28
, pp. 398-406
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
2
-
-
57149085868
-
Genomics of bacteria and archaea: The emerging dynamic view of the prokaryotic world
-
Koonin, E. V. and Wolf, Y. I. (2008) Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world Nucleic Acids Res. 36, 6688-6719
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 6688-6719
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
3
-
-
79958850343
-
Synergistic use of plant-prokaryote comparative genomics for functional annotations
-
Gerdes, S., El Yacoubi, B., Bailly, M., Blaby, I. K., Blaby-Haas, C. E., Jeanguenin, L., Lara-Núñez, A., Pribat, A., Waller, J. C., Wilke, A., Overbeek, R., Hanson, A. D., and de Crécy-Lagard null, V. (2011) Synergistic use of plant-prokaryote comparative genomics for functional annotations BMC Genomics 12 (Suppl 1) S2
-
(2011)
BMC Genomics
, vol.12
, Issue.SUPPL. 1
, pp. 2
-
-
Gerdes, S.1
El Yacoubi, B.2
Bailly, M.3
Blaby, I.K.4
Blaby-Haas, C.E.5
Jeanguenin, L.6
Lara-Núñez, A.7
Pribat, A.8
Waller, J.C.9
Wilke, A.10
Overbeek, R.11
Hanson, A.D.12
De Crécy-Lagard Null, V.13
-
4
-
-
81255138862
-
The enzyme function initiative
-
Gerlt, J. A., Allen, K. N., Almo, S. C., Armstrong, R. N., Babbitt, P. C., Cronan, J. E., Dunaway-Mariano, D., Imker, H. J., Jacobson, M. P., Minor, W., Poulter, C. D., Raushel, F. M., Sali, A., Shoichet, B. K., and Sweedler, J. V. (2011) The enzyme function initiative Biochemistry 50, 9950-9962
-
(2011)
Biochemistry
, vol.50
, pp. 9950-9962
-
-
Gerlt, J.A.1
Allen, K.N.2
Almo, S.C.3
Armstrong, R.N.4
Babbitt, P.C.5
Cronan, J.E.6
Dunaway-Mariano, D.7
Imker, H.J.8
Jacobson, M.P.9
Minor, W.10
Poulter, C.D.11
Raushel, F.M.12
Sali, A.13
Shoichet, B.K.14
Sweedler, J.V.15
-
5
-
-
65549105636
-
A conserved gene cluster rules anaerobic oxidative degradation of L-ornithine
-
Fonknechten, N., Perret, A., Perchat, N., Tricot, S., Lechaplais, C., Vallenet, D., Vergne, C., Zaparucha, A., Paslier, D. L., Weissenbach, J., and Salanoubat, M. (2009) A conserved gene cluster rules anaerobic oxidative degradation of L-ornithine J. Bacteriol. 191, 3162-3167
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3162-3167
-
-
Fonknechten, N.1
Perret, A.2
Perchat, N.3
Tricot, S.4
Lechaplais, C.5
Vallenet, D.6
Vergne, C.7
Zaparucha, A.8
Paslier, D.L.9
Weissenbach, J.10
Salanoubat, M.11
-
6
-
-
72449145463
-
'Unknown' proteins and 'orphan' enzymes: The missing half of the engineering parts list-and how to find it
-
Hanson, A. D., Pribat, A., Waller, J. C., and de Crécy-Lagard, V. (2010) 'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list-and how to find it Biochem. J. 425, 1-11
-
(2010)
Biochem. J.
, vol.425
, pp. 1-11
-
-
Hanson, A.D.1
Pribat, A.2
Waller, J.C.3
De Crécy-Lagard, V.4
-
7
-
-
50649114261
-
Annotating genes of known and unknown function by large-scale coexpression analysis
-
DOI 10.1104/pp.108.117366
-
Horan, K., Jang, C., Bailey-Serres, J., Mittler, R., Shelton, C., Harper, J. F., Zhu, J.-K., Cushman, J. C., Gollery, M., and Girke, T. (2008) Annotating genes of known and unknown function by large-scale coexpression analysis Plant Physiol. 147, 41-57 (Pubitemid 352844339)
-
(2008)
Plant Physiology
, vol.147
, Issue.1
, pp. 41-57
-
-
Horan, K.1
Jang, C.2
Bailey-Serres, J.3
Mittler, R.4
Shelton, C.5
Harper, J.F.6
Zhu, J.-K.7
Cushman, J.C.8
Gollery, M.9
Girke, T.10
-
8
-
-
78650475398
-
Phenotypic landscape of a bacterial cell
-
Nichols, R. J., Sen, S., Choo, Y. J., Beltrao, P., Zietek, M., Chaba, R., Lee, S., Kazmierczak, K. M., Lee, K. J., Wong, A., Shales, M., Lovett, S., Winkler, M. E., Krogan, N. J., Typas, A., and Gross, C. A. (2011) Phenotypic landscape of a bacterial cell Cell 144, 143-156
-
(2011)
Cell
, vol.144
, pp. 143-156
-
-
Nichols, R.J.1
Sen, S.2
Choo, Y.J.3
Beltrao, P.4
Zietek, M.5
Chaba, R.6
Lee, S.7
Kazmierczak, K.M.8
Lee, K.J.9
Wong, A.10
Shales, M.11
Lovett, S.12
Winkler, M.E.13
Krogan, N.J.14
Typas, A.15
Gross, C.A.16
-
9
-
-
81755163097
-
Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions
-
Deutschbauer, A., Price, M. N., Wetmore, K. M., Shao, W., Baumohl, J. K., Xu, Z., Nguyen, M., Tamse, R., Davis, R. W., and Arkin, A. P. (2011) Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions PLoS Genet. 7, e1002385
-
(2011)
PLoS Genet.
, vol.7
, pp. 1002385
-
-
Deutschbauer, A.1
Price, M.N.2
Wetmore, K.M.3
Shao, W.4
Baumohl, J.K.5
Xu, Z.6
Nguyen, M.7
Tamse, R.8
Davis, R.W.9
Arkin, A.P.10
-
10
-
-
45849153463
-
Separation and mass spectrometry in microbial metabolomics
-
Garcia, D. E., Baidoo, E. E., Benke, P. I., Pingitore, F., Tang, Y. J., Villa, S., and Keasling, J. D. (2008) Separation and mass spectrometry in microbial metabolomics Curr. Opin. Microbiol. 11, 233-239
-
(2008)
Curr. Opin. Microbiol.
, vol.11
, pp. 233-239
-
-
Garcia, D.E.1
Baidoo, E.E.2
Benke, P.I.3
Pingitore, F.4
Tang, Y.J.5
Villa, S.6
Keasling, J.D.7
-
11
-
-
70349971144
-
Mass spectrometry based metabolomics and enzymatic assays for functional genomics
-
Baran, R., Reindl, W., and Northen, T. R. (2009) Mass spectrometry based metabolomics and enzymatic assays for functional genomics Curr. Opin. Microbiol. 12, 547-552
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 547-552
-
-
Baran, R.1
Reindl, W.2
Northen, T.R.3
-
12
-
-
77952885573
-
Unveiling cellular biochemical reactions via metabolomics-driven approaches
-
Saito, N., Ohashi, Y., Soga, T., and Tomita, M. (2010) Unveiling cellular biochemical reactions via metabolomics-driven approaches Curr. Opin. Microbiol. 13, 358-362
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 358-362
-
-
Saito, N.1
Ohashi, Y.2
Soga, T.3
Tomita, M.4
-
13
-
-
48749132804
-
Analytical strategies for LC-MS-based targeted metabolomics
-
Lu, W., Bennett, B. D., and Rabinowitz, J. D. (2008) Analytical strategies for LC-MS-based targeted metabolomics J. Chromatogr., B 871, 236-242
-
(2008)
J. Chromatogr., B
, vol.871
, pp. 236-242
-
-
Lu, W.1
Bennett, B.D.2
Rabinowitz, J.D.3
-
14
-
-
83455250219
-
Separation strategies for untargeted metabolomics
-
Patti, G. J. (2011) Separation strategies for untargeted metabolomics J. Sep. Sci. 34, 3460-3469
-
(2011)
J. Sep. Sci.
, vol.34
, pp. 3460-3469
-
-
Patti, G.J.1
-
15
-
-
80052785690
-
High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection-time-of-flight mass spectrometry
-
Fuhrer, T., Heer, D., Begemann, B., and Zamboni, N. (2011) High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection-time-of-flight mass spectrometry Anal. Chem. 83, 7074-7080
-
(2011)
Anal. Chem.
, vol.83
, pp. 7074-7080
-
-
Fuhrer, T.1
Heer, D.2
Begemann, B.3
Zamboni, N.4
-
16
-
-
23244467785
-
Monitoring enzymatic conversions by mass spectrometry: A critical review
-
DOI 10.1007/s00216-005-3305-2
-
Liesener, A. and Karst, U. (2005) Monitoring enzymatic conversions by mass spectrometry: a critical review Anal. Bioanal. Chem. 382, 1451-1464 (Pubitemid 41090448)
-
(2005)
Analytical and Bioanalytical Chemistry
, vol.382
, Issue.7
, pp. 1451-1464
-
-
Liesener, A.1
Karst, U.2
-
17
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10,000 da
-
Karas, M. and Hillenkamp, F. (1988) Laser desorption ionization of proteins with molecular masses exceeding 10,000 Da Anal. Chem. 60, 2299-2301
-
(1988)
Anal. Chem.
, vol.60
, pp. 2299-2301
-
-
Karas, M.1
Hillenkamp, F.2
-
18
-
-
35548992879
-
Clathrate nanostructures for mass spectrometry
-
DOI 10.1038/nature06195, PII NATURE06195
-
Northen, T. R., Yanes, O., Northen, M. T., Marrinucci, D., Uritboonthai, W., Apon, J., Golledge, S. L., Nordström, A., and Siuzdak, G. (2007) Clathrate nanostructures for mass spectrometry Nature 449, 1033-1036 (Pubitemid 350017585)
-
(2007)
Nature
, vol.449
, Issue.7165
, pp. 1033-1036
-
-
Northen, T.R.1
Yanes, O.2
Northen, M.T.3
Marrinucci, D.4
Uritboonthai, W.5
Apon, J.6
Golledge, S.L.7
Nordstrom, A.8
Siuzdak, G.9
-
19
-
-
84984042980
-
Protein and polymer analyses up to m/z 100 000 by laser ionization time-of-flight mass spectrometry
-
Tanaka, K., Waki, H., Ido, Y., Akita, S., Yoshida, Y., and Yoshida, T. (1988) Protein and polymer analyses up to m/z 100 000 by laser ionization time-of-flight mass spectrometry Rapid Commun. Mass Spectrom. 2, 151-153
-
(1988)
Rapid Commun. Mass Spectrom.
, vol.2
, pp. 151-153
-
-
Tanaka, K.1
Waki, H.2
Ido, Y.3
Akita, S.4
Yoshida, Y.5
Yoshida, T.6
-
20
-
-
0038574979
-
Ion suppression in mass spectrometry
-
DOI 10.1373/49.7.1041
-
Annesley, T. M. (2003) Ion suppression in mass spectrometry Clin. Chem. 49, 1041-1044 (Pubitemid 36751088)
-
(2003)
Clinical Chemistry
, vol.49
, Issue.7
, pp. 1041-1044
-
-
Annesley, T.M.1
-
21
-
-
79960999883
-
Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities RID C-1373-2010
-
Reindl, W., Deng, K., Gladden, J. M., Cheng, G., Wong, A., Singer, S. W., Singh, S., Lee, J. C., Yao, C. H., Hazen, T. C., Singh, A. K., Simmons, B. A., Adams, P. D., and Northen, T. R. (2011) Colloid-based multiplexed screening for plant biomass-degrading glycoside hydrolase activities in microbial communities RID C-1373-2010 Energy Environ. Sci. 4, 2884-2893
-
(2011)
Energy Environ. Sci.
, vol.4
, pp. 2884-2893
-
-
Reindl, W.1
Deng, K.2
Gladden, J.M.3
Cheng, G.4
Wong, A.5
Singer, S.W.6
Singh, S.7
Lee, J.C.8
Yao, C.H.9
Hazen, T.C.10
Singh, A.K.11
Simmons, B.A.12
Adams, P.D.13
Northen, T.R.14
-
22
-
-
33747169854
-
Metabolomics approach for enzyme discovery
-
DOI 10.1021/pr0600576
-
Saito, N., Robert, M., Kitamura, S., Baran, R., Soga, T., Mori, H., Nishioka, T., and Tomita, M. (2006) Metabolomics approach for enzyme discovery J Proteome Res. 5, 1979-1987 (Pubitemid 44232710)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.8
, pp. 1979-1987
-
-
Saito, N.1
Robert, M.2
Kitamura, S.3
Baran, R.4
Soga, T.5
Mori, H.6
Nishioka, T.7
Tomita, M.8
-
23
-
-
67650251927
-
Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli
-
Saito, N., Robert, M., Kochi, H., Matsuo, G., Kakazu, Y., Soga, T., and Tomita, M. (2009) Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli J. Biol. Chem. 284, 16442-16451
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 16442-16451
-
-
Saito, N.1
Robert, M.2
Kochi, H.3
Matsuo, G.4
Kakazu, Y.5
Soga, T.6
Tomita, M.7
-
24
-
-
8544253237
-
Assignment of endogenous substrates to enzymes by global metabolite profiling
-
DOI 10.1021/bi0480335
-
Saghatelian, A., Trauger, S. A., Want, E. J., Hawkins, E. G., Siuzdak, G., and Cravatt, B. F. (2004) Assignment of endogenous substrates to enzymes by global metabolite profiling Biochemistry 43, 14332-14339 (Pubitemid 39491967)
-
(2004)
Biochemistry
, vol.43
, Issue.45
, pp. 14332-14339
-
-
Saghatelian, A.1
Trauger, S.A.2
Want, E.J.3
Hawkins, E.G.4
Siuzdak, G.5
Cravatt, B.F.6
-
25
-
-
80054856731
-
Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids
-
Long, J. Z., Cisar, J. S., Milliken, D., Niessen, S., Wang, C., Trauger, S. A., Siuzdak, G., and Cravatt, B. F. (2011) Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids Nat. Chem. Biol. 7, 763-765
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 763-765
-
-
Long, J.Z.1
Cisar, J.S.2
Milliken, D.3
Niessen, S.4
Wang, C.5
Trauger, S.A.6
Siuzdak, G.7
Cravatt, B.F.8
-
26
-
-
0038699591
-
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting
-
DOI 10.1038/nbt823
-
Allen, J., Davey, H. M., Broadhurst, D., Heald, J. K., Rowland, J. J., Oliver, S. G., and Kell, D. B. (2003) High-throughput classification of yeast mutants for functional genomics using metabolic footprinting Nat. Biotechnol. 21, 692-696 (Pubitemid 36638098)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.6
, pp. 692-696
-
-
Allen, J.1
Davey, H.M.2
Broadhurst, D.3
Heald, J.K.4
Rowland, J.J.5
Oliver, S.G.6
Kell, D.B.7
-
27
-
-
80755125390
-
Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002
-
Baran, R., Bowen, B. P., and Northen, T. R. (2011) Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002 Mol. Biosyst. 7, 3200-3206
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 3200-3206
-
-
Baran, R.1
Bowen, B.P.2
Northen, T.R.3
-
28
-
-
78049521558
-
Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling
-
Baran, R., Bowen, B. P., Bouskill, N. J., Brodie, E. L., Yannone, S. M., and Northen, T. R. (2010) Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling Anal. Chem. 82, 9034-9042
-
(2010)
Anal. Chem.
, vol.82
, pp. 9034-9042
-
-
Baran, R.1
Bowen, B.P.2
Bouskill, N.J.3
Brodie, E.L.4
Yannone, S.M.5
Northen, T.R.6
-
29
-
-
77955495197
-
Constraint-based model of Shewanella oneidensis MR-1 metabolism: A tool for data analysis and hypothesis generation
-
Pinchuk, G. E., Hill, E. A., Geydebrekht, O. V., De Ingeniis, J., Zhang, X., Osterman, A., Scott, J. H., Reed, S. B., Romine, M. F., Konopka, A. E., Beliaev, A. S., Fredrickson, J. K., and Reed, J. L. (2010) Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation PLoS Comput. Biol. 6, e1000822
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1000822
-
-
Pinchuk, G.E.1
Hill, E.A.2
Geydebrekht, O.V.3
De Ingeniis, J.4
Zhang, X.5
Osterman, A.6
Scott, J.H.7
Reed, S.B.8
Romine, M.F.9
Konopka, A.E.10
Beliaev, A.S.11
Fredrickson, J.K.12
Reed, J.L.13
-
30
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection Mol. Syst. Biol. 2, 2006.0008
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 20060008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
31
-
-
0022400743
-
Escherichia coli S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase. Purification, substrate specificity and mechanism of action
-
Della Ragione, F., Porcelli, M., CarteniÌ-Farina, M., Zappia, V., and Pegg, A. E. (1985) Escherichia coli S-adenosylhomocysteine/5′- methylthioadenosine nucleosidase. Purification, substrate specificity and mechanism of action Biochem. J. 232, 335-341 (Pubitemid 16210763)
-
(1985)
Biochemical Journal
, vol.232
, Issue.2
, pp. 335-341
-
-
Della Ragione, F.1
Porcelli, M.2
Carteni-Farina, M.3
-
32
-
-
0032481609
-
Cloning and expression of Escherichia coli 5'-methylthioadenosine/S- adenosylhomocysteine nucleosidase identification of the pfs gene product
-
DOI 10.1016/S0167-4781(97)00169-3, PII S0167478197001693
-
Cornell, K. A. and Riscoe, M. K. (1998) Cloning and expression of Escherichia coli 5′-methylthioadenosine/S-adenosylhomocysteine nucleosidase: identification of the pfs gene product Biochim. Biophys. Acta 1396, 8-14 (Pubitemid 28131438)
-
(1998)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1396
, Issue.1
, pp. 8-14
-
-
Cornell, K.A.1
Riscoe, M.K.2
-
33
-
-
0015240403
-
Hyperproduction and purification of nicotinamide deamidase, a microconstitutive enzyme of Escherichia coli
-
Pardee, A. B., Benz, E., Jr., St Peter, D. A., Krieger, J. N., Meuth, M., and Trieshmann, H., Jr. (1971) Hyperproduction and purification of nicotinamide deamidase, a microconstitutive enzyme of Escherichia coli J. Biol. Chem. 246, 6792-6796
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 6792-6796
-
-
Pardee, A.B.1
Benz, Jr.E.2
St Peter, D.A.3
Krieger, J.N.4
Meuth, M.5
Trieshmann, Jr.H.6
-
34
-
-
0027291428
-
Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria
-
Postma, P. W., Lengeler, J. W., and Jacobson, G. R. (1993) Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria Microbiol. Rev. 57, 543-594
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 543-594
-
-
Postma, P.W.1
Lengeler, J.W.2
Jacobson, G.R.3
-
35
-
-
0021762288
-
Purification, molecular and kinetic properties of glucosamine-6-phosphate isomerase (deaminase) from Escherichia coli
-
Calcagno, M., Campos, P. J., Mulliert, G., and Suástegui, J. (1984) Purification, molecular and kinetic properties of glucosamine-6-phosphate isomerase (deaminase) from Escherichia coli Biochim. Biophys. Acta 787, 165-173
-
(1984)
Biochim. Biophys. Acta
, vol.787
, pp. 165-173
-
-
Calcagno, M.1
Campos, P.J.2
Mulliert, G.3
Suástegui, J.4
-
36
-
-
38349189124
-
Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS
-
Ohashi, Y., Hirayama, A., Ishikawa, T., Nakamura, S., Shimizu, K., Ueno, Y., Tomita, M., and Soga, T. (2008) Depiction of metabolome changes in histidine-starved Escherichia coli by CE-TOFMS Mol. Biosyst. 4, 135-147
-
(2008)
Mol. Biosyst.
, vol.4
, pp. 135-147
-
-
Ohashi, Y.1
Hirayama, A.2
Ishikawa, T.3
Nakamura, S.4
Shimizu, K.5
Ueno, Y.6
Tomita, M.7
Soga, T.8
-
37
-
-
41849121949
-
Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators
-
DOI 10.1093/nar/gkn047
-
Rodionov, D. A., De Ingeniis, J., Mancini, C., Cimadamore, F., Zhang, H., Osterman, A. L., and Raffaelli, N. (2008) Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators Nucleic Acids Res. 36, 2047-2059 (Pubitemid 351494246)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.6
, pp. 2047-2059
-
-
Rodionov, D.A.1
De Ingeniis, J.2
Mancini, C.3
Cimadamore, F.4
Zhang, H.5
Osterman, A.L.6
Raffaelli, N.7
-
38
-
-
77952368044
-
In vitro reconstitution of mycobacterial ergothioneine biosynthesis
-
Seebeck, F. P. (2010) In vitro reconstitution of mycobacterial ergothioneine biosynthesis J. Am. Chem. Soc. 132, 6632-6633
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 6632-6633
-
-
Seebeck, F.P.1
-
39
-
-
18944367563
-
Recycling of the anhydro-N-acetylmuramic acid derived from cell wall murein involves a two-step conversion to N-acetylglucosamine-phosphate
-
DOI 10.1128/JB.187.11.3643-3649.2005
-
Uehara, T., Suefuji, K., Valbuena, N., Meehan, B., Donegan, M., and Park, J. T. (2005) Recycling of the anhydro-N-acetylmuramic acid derived from cell wall murein involves a two-step conversion to N-acetylglucosamine-phosphate J. Bacteriol. 187, 3643-3649 (Pubitemid 40705566)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.11
, pp. 3643-3649
-
-
Uehara, T.1
Suefuji, K.2
Valbuena, N.3
Meehan, B.4
Donegan, M.5
Park, J.T.6
-
40
-
-
32444443104
-
MurQ etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall
-
DOI 10.1128/JB.188.4.1660-1662.2006
-
Uehara, T., Suefuji, K., Jaeger, T., Mayer, C., and Park, J. T. (2006) MurQ Etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall J. Bacteriol. 188, 1660-1662 (Pubitemid 43228701)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.4
, pp. 1660-1662
-
-
Uehara, T.1
Suefuji, K.2
Jaeger, T.3
Mayer, C.4
Park, J.T.5
-
41
-
-
67749117916
-
LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli
-
Uehara, T., Dinh, T., and Bernhardt, T. G. (2009) LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli J. Bacteriol. 191, 5094-5107
-
(2009)
J. Bacteriol.
, vol.191
, pp. 5094-5107
-
-
Uehara, T.1
Dinh, T.2
Bernhardt, T.G.3
-
42
-
-
38849104227
-
Comparative genomics and functional annotation of bacterial transporters
-
Gelfand, M. S. and Rodionov, D. A. (2008) Comparative genomics and functional annotation of bacterial transporters Phys. Life Rev. 5, 22-49
-
(2008)
Phys. Life Rev.
, vol.5
, pp. 22-49
-
-
Gelfand, M.S.1
Rodionov, D.A.2
-
43
-
-
33645151681
-
A new pooling strategy for high-throughput screening: The Shifted Transversal Design
-
Thierry-Mieg, N. (2006) A new pooling strategy for high-throughput screening: the Shifted Transversal Design BMC Bioinf. 7, 28
-
(2006)
BMC Bioinf.
, vol.7
, pp. 28
-
-
Thierry-Mieg, N.1
-
44
-
-
33646381658
-
A pooling-deconvolution strategy for biological network elucidation
-
Jin, F., Hazbun, T., Michaud, G. A., Salcius, M., Predki, P. F., Fields, S., and Huang, J. (2006) A pooling-deconvolution strategy for biological network elucidation Nat. Methods 3, 183-189
-
(2006)
Nat. Methods
, vol.3
, pp. 183-189
-
-
Jin, F.1
Hazbun, T.2
Michaud, G.A.3
Salcius, M.4
Predki, P.F.5
Fields, S.6
Huang, J.7
-
45
-
-
84863412250
-
Acoustic deposition with NIMS as a high-throughput enzyme activity assay
-
Greving, M., Cheng, X., Reindl, W., Bowen, B., Deng, K., Louie, K., Nyman, M., Cohen, J., Singh, A., Simmons, B., Adams, P., Siuzdak, G., and Northen, T. (2012) Acoustic deposition with NIMS as a high-throughput enzyme activity assay Anal. Bioanal. Chem. 403, 707-711
-
(2012)
Anal. Bioanal. Chem.
, vol.403
, pp. 707-711
-
-
Greving, M.1
Cheng, X.2
Reindl, W.3
Bowen, B.4
Deng, K.5
Louie, K.6
Nyman, M.7
Cohen, J.8
Singh, A.9
Simmons, B.10
Adams, P.11
Siuzdak, G.12
Northen, T.13
-
46
-
-
0031951443
-
Growth at low temperature causes nitrogen limitation in the cyanobacterium Synechococcus sp. PCC 7002
-
DOI 10.1007/s002030050535
-
Sakamoto, T. and Bryant, D. A. (1998) Growth at low temperature causes nitrogen limitation in the cyanobacterium Synechococcus sp. PCC 7002 Arch. Microbiol. 169, 10-19 (Pubitemid 28108901)
-
(1998)
Archives of Microbiology
, vol.169
, Issue.1
, pp. 10-19
-
-
Sakamoto, T.1
Bryant, D.A.2
-
47
-
-
33845869336
-
MathDAMP: A package for differential analysis of metabolite profiles
-
Baran, R., Kochi, H., Saito, N., Suematsu, M., Soga, T., Nishioka, T., Robert, M., and Tomita, M. (2006) MathDAMP: a package for differential analysis of metabolite profiles BMC Bioinf. 7, 530
-
(2006)
BMC Bioinf.
, vol.7
, pp. 530
-
-
Baran, R.1
Kochi, H.2
Saito, N.3
Suematsu, M.4
Soga, T.5
Nishioka, T.6
Robert, M.7
Tomita, M.8
-
48
-
-
77955796409
-
A universal TagModule collection for parallel genetic analysis of microorganisms
-
Oh, J., Fung, E., Price, M. N., Dehal, P. S., Davis, R. W., Giaever, G., Nislow, C., Arkin, A. P., and Deutschbauer, A. (2010) A universal TagModule collection for parallel genetic analysis of microorganisms Nucleic Acids Res. 38, e146
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 146
-
-
Oh, J.1
Fung, E.2
Price, M.N.3
Dehal, P.S.4
Davis, R.W.5
Giaever, G.6
Nislow, C.7
Arkin, A.P.8
Deutschbauer, A.9
-
49
-
-
39449112551
-
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome
-
DOI 10.1126/science.1151721
-
Gibson, D. G., Benders, G. A., Andrews-Pfannkoch, C., Denisova, E. A., Baden-Tillson, H., Zaveri, J., Stockwell, T. B., Brownley, A., Thomas, D. W., Algire, M. A., Merryman, C., Young, L., Noskov, V. N., Glass, J. I., Venter, J. C., Hutchison, C. A., 3rd, and Smith, H. O. (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome Science 319, 1215-1220 (Pubitemid 351323011)
-
(2008)
Science
, vol.319
, Issue.5867
, pp. 1215-1220
-
-
Gibson, D.G.1
Benders, G.A.2
Andrews-Pfannkoch, C.3
Denisova, E.A.4
Baden-Tillson, H.5
Zaveri, J.6
Stockwell, T.B.7
Brownley, A.8
Thomas, D.W.9
Algire, M.A.10
Merryman, C.11
Young, L.12
Noskov, V.N.13
Glass, J.I.14
Venter, J.C.15
Hutchison III, C.A.16
Smith, H.O.17
-
50
-
-
0026559288
-
Structural and biochemical characterization of the Escherichia coli argE gene product
-
Meinnel, T., Schmitt, E., Mechulam, Y., and Blanquet, S. (1992) Structural and biochemical characterization of the Escherichia coli argE gene product J. Bacteriol. 174, 2323-2331
-
(1992)
J. Bacteriol.
, vol.174
, pp. 2323-2331
-
-
Meinnel, T.1
Schmitt, E.2
Mechulam, Y.3
Blanquet, S.4
|