-
1
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird, D., Ross, M., Chen, W.-S., Danielsson, M., Fennell, T., Russ, C., Jaffe, D., Nusbaum, C. and Gnirke, A. (2011) Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol. 12, R18.
-
(2011)
Genome Biol.
, vol.12
, pp. R18
-
-
Aird, D.1
Ross, M.2
Chen, W.-S.3
Danielsson, M.4
Fennell, T.5
Russ, C.6
Jaffe, D.7
Nusbaum, C.8
Gnirke, A.9
-
2
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros, V., Bartel, B., Bartel, D.P., Burge, C.B., Carrington, J.C., Chen, X., Dreyfuss, G., Eddy, S.R., Griffiths-Jones, S.A.M., Marshall, M., Matzke, M., Ruvkun, G. and Tuschl, T. (2003) A uniform system for microRNA annotation. RNA, 9, 277-279.
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
Chen, X.6
Dreyfuss, G.7
Eddy, S.R.8
Griffiths-Jones, S.A.M.9
Marshall, M.10
Matzke, M.11
Ruvkun, G.12
Tuschl, T.13
-
3
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
-
Aukerman, M.J. and Sakai, H. (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell, 15, 2730-2741.
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
4
-
-
79955524820
-
Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
-
Baev, V., Milev, I., Naydenov, M., Apostolova, E., Minkov, G., Minkov, I. and Yahubyan, G. (2011) Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs. Genomics, 97, 282-293.
-
(2011)
Genomics
, vol.97
, pp. 282-293
-
-
Baev, V.1
Milev, I.2
Naydenov, M.3
Apostolova, E.4
Minkov, G.5
Minkov, I.6
Yahubyan, G.7
-
5
-
-
84890078716
-
Identification of cassava microRNAs under abiotic stress
-
Ballen-Taborda, C., Plata, G., Ayling, S., Rodriguez-Zapata, F., Becerra Lopez-Lavalle, L.A., Duitama, J. and Tohme, J. (2013) Identification of cassava microRNAs under abiotic stress. Int. J. Genomics, 2013, 857-986.
-
(2013)
Int. J. Genomics
, vol.2013
, pp. 857-986
-
-
Ballen-Taborda, C.1
Plata, G.2
Ayling, S.3
Rodriguez-Zapata, F.4
Becerra Lopez-Lavalle, L.A.5
Duitama, J.6
Tohme, J.7
-
6
-
-
41149120780
-
Conservation and divergence of microRNAs in Populus
-
Barakat, A., Wall, P.K., Diloreto, S., Depamphilis, C.W. and Carlson, J.E. (2007) Conservation and divergence of microRNAs in Populus. BMC Genom. 8, 481.
-
(2007)
BMC Genom.
, vol.8
, pp. 481
-
-
Barakat, A.1
Wall, P.K.2
Diloreto, S.3
Depamphilis, C.W.4
Carlson, J.E.5
-
7
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel, D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
8
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel, D.P. (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
9
-
-
84455175504
-
The effect of uncertainty on US transport-related GHG emissions and fuel consumption out to 2050
-
Bastani, P., Heywood, J.B. and Hope, C. (2012) The effect of uncertainty on US transport-related GHG emissions and fuel consumption out to 2050. Transportation Res. A-Pol. 46, 517-548.
-
(2012)
Transportation Res. A-Pol.
, vol.46
, pp. 517-548
-
-
Bastani, P.1
Heywood, J.B.2
Hope, C.3
-
10
-
-
84893419524
-
Effects of altered lignin biosynthesis on phenylpropanoid metabolism and plant stress
-
Baxter, H.L. and Stewart, C.N. Jr. (2013) Effects of altered lignin biosynthesis on phenylpropanoid metabolism and plant stress. Biofuels, 4, 635-650.
-
(2013)
Biofuels
, vol.4
, pp. 635-650
-
-
Baxter, H.L.1
Stewart Jr, C.N.2
-
11
-
-
84875630642
-
Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
-
Bertolini, E., Verelst, W., Horner, D.S., Gianfranceschi, L., Piccolo, V., Inze, D., Pe, M.E. and Mica, E. (2013) Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. Mol. Plant. 6, 423-443.
-
(2013)
Mol. Plant.
, vol.6
, pp. 423-443
-
-
Bertolini, E.1
Verelst, W.2
Horner, D.S.3
Gianfranceschi, L.4
Piccolo, V.5
Inze, D.6
Pe, M.E.7
Mica, E.8
-
12
-
-
84873119880
-
Improved lignocellulose conversion to biofuels with thermophilic bacteria and thermostable enzymes
-
Bhalla, A., Bansal, N., Kumar, S., Bischoff, K.M. and Sani, R.K. (2013) Improved lignocellulose conversion to biofuels with thermophilic bacteria and thermostable enzymes. Bioresour. Technol. 128, 751-759.
-
(2013)
Bioresour. Technol.
, vol.128
, pp. 751-759
-
-
Bhalla, A.1
Bansal, N.2
Kumar, S.3
Bischoff, K.M.4
Sani, R.K.5
-
13
-
-
78649317688
-
Agricultural crop-based biofuels - resource efficiency and environmental performance including direct land use changes
-
Börjesson, P. and Tufvesson, L.M. (2011) Agricultural crop-based biofuels - resource efficiency and environmental performance including direct land use changes. J. Cleaner Prod. 19, 108-120.
-
(2011)
J. Cleaner Prod.
, vol.19
, pp. 108-120
-
-
Börjesson, P.1
Tufvesson, L.M.2
-
14
-
-
84861987572
-
Sweet sorghum as a model system for bioenergy crops
-
Calvino, M. and Messing, J. (2012) Sweet sorghum as a model system for bioenergy crops. Curr. Opin. Biotech. 23, 323-329.
-
(2012)
Curr. Opin. Biotech.
, vol.23
, pp. 323-329
-
-
Calvino, M.1
Messing, J.2
-
15
-
-
79960017191
-
Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
-
Calvino, M., Bruggmann, R. and Messing, J. (2011) Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems. BMC Genom. 12, 356.
-
(2011)
BMC Genom.
, vol.12
, pp. 356
-
-
Calvino, M.1
Bruggmann, R.2
Messing, J.3
-
16
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen, X.M. (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 303, 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.M.1
-
17
-
-
34047174556
-
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
-
Chuck, G., Cigan, A.M., Saeteurn, K. and Hake, S. (2007) The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA. Nat. Genet. 39, 544-549.
-
(2007)
Nat. Genet.
, vol.39
, pp. 544-549
-
-
Chuck, G.1
Cigan, A.M.2
Saeteurn, K.3
Hake, S.4
-
18
-
-
80054819864
-
Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass
-
Chuck, G.S., Tobias, C., Sun, L., Kraemer, F., Li, C., Dibble, D., Arora, R., Bragg, J.N., Vogel, J.P., Singh, S., Simmons, B.A., Pauly, M. and Hake, S. (2011) Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass. Proc. Natl Acad. Sci. USA, 108, 17550-17555.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 17550-17555
-
-
Chuck, G.S.1
Tobias, C.2
Sun, L.3
Kraemer, F.4
Li, C.5
Dibble, D.6
Arora, R.7
Bragg, J.N.8
Vogel, J.P.9
Singh, S.10
Simmons, B.A.11
Pauly, M.12
Hake, S.13
-
19
-
-
84899965484
-
High dry matter whole-plant corn as a biomass feedstock
-
Cook, D.E., Schinners, K.J., Weimer, P.J. and Muck, R.E. (2014) High dry matter whole-plant corn as a biomass feedstock. Biomass Bioenergy, 64, 230-236.
-
(2014)
Biomass Bioenergy
, vol.64
, pp. 230-236
-
-
Cook, D.E.1
Schinners, K.J.2
Weimer, P.J.3
Muck, R.E.4
-
20
-
-
77950962979
-
Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs
-
Covarrubias, A.A. and Reyes, J.L. (2010) Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs. Plant Cell Environ. 33, 481-489.
-
(2010)
Plant Cell Environ.
, vol.33
, pp. 481-489
-
-
Covarrubias, A.A.1
Reyes, J.L.2
-
21
-
-
79953086307
-
Evolution and functional diversification of MIRNA genes
-
Cuperus, J.T., Fahlgren, N. and Carrington, J.C. (2011) Evolution and functional diversification of MIRNA genes. Plant Cell, 23, 431-442.
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
22
-
-
84893723345
-
Library preparation methods for next-generation sequencing: tone down the bias
-
van Dijk, E.L., Jaszczyszyn, Y. and Thermes, C. (2014) Library preparation methods for next-generation sequencing: tone down the bias. Exp. Cell Res. 322, 12-20.
-
(2014)
Exp. Cell Res.
, vol.322
, pp. 12-20
-
-
van Dijk, E.L.1
Jaszczyszyn, Y.2
Thermes, C.3
-
23
-
-
84895867913
-
Molecular strategies for addressing gene flow problems and their potential applications in abiotic stress tolerant transgenic plants
-
Ding, J., Duan, H., Deng, Z., Zhao, D., Ganjun, Y., McAvoy, R. and Li, Y. (2014) Molecular strategies for addressing gene flow problems and their potential applications in abiotic stress tolerant transgenic plants. Crit. Rev. Plant Sci. 33, 190-204.
-
(2014)
Crit. Rev. Plant Sci.
, vol.33
, pp. 190-204
-
-
Ding, J.1
Duan, H.2
Deng, Z.3
Zhao, D.4
Ganjun, Y.5
McAvoy, R.6
Li, Y.7
-
24
-
-
84881030354
-
Introgression of crop alleles into wild or weedy populations
-
Ellstrand, N.C., Meirmans, P., Rong, J., Bartsch, D., Ghosh, A., de Jong, T.J., Haccou, P., Lu, B.-R., Snow, A.A., Neal Stewart, C., Strasburg, J.L., van Tienderen, P.H., Vrieling, K. and Hooftman, D. (2013) Introgression of crop alleles into wild or weedy populations. Annu. Rev. Ecol. Evol. Syst. 44, 325-345.
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 325-345
-
-
Ellstrand, N.C.1
Meirmans, P.2
Rong, J.3
Bartsch, D.4
Ghosh, A.5
de Jong, T.J.6
Haccou, P.7
Lu, B.-R.8
Snow, A.A.9
Neal Stewart, C.10
Strasburg, J.L.11
van Tienderen, P.H.12
Vrieling, K.13
Hooftman, D.14
-
25
-
-
84883239272
-
Dynamic analysis of Arabidopsis AP2 σ subunit reveals a key role in clathrin-mediated endocytosis and plant development
-
Fan, L., Hao, H., Xue, Y., Zhang, L., Song, K., Ding, Z., Botella, M.A., Wang, H. and Lin, J. (2013) Dynamic analysis of Arabidopsis AP2 σ subunit reveals a key role in clathrin-mediated endocytosis and plant development. Development, 140, 3826-3837.
-
(2013)
Development
, vol.140
, pp. 3826-3837
-
-
Fan, L.1
Hao, H.2
Xue, Y.3
Zhang, L.4
Song, K.5
Ding, Z.6
Botella, M.A.7
Wang, H.8
Lin, J.9
-
26
-
-
84867422730
-
microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.)
-
Ferreira, T.H., Gentile, A., Vilela, R.D., Costa, G.G., Dias, L.I., Endres, L. and Menossi, M. (2012) microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.). PLoS ONE, 7, e46703.
-
(2012)
PLoS ONE
, vol.7
, pp. e46703
-
-
Ferreira, T.H.1
Gentile, A.2
Vilela, R.D.3
Costa, G.G.4
Dias, L.I.5
Endres, L.6
Menossi, M.7
-
27
-
-
84871824918
-
Evolution of the ARF gene family in land plants: old domains, new tricks
-
Finet, C., Berne-Dedieu, A., Scutt, C.P. and Marlétaz, F. (2013) Evolution of the ARF gene family in land plants: old domains, new tricks. Mol. Biol. Evol. 30, 45-56.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 45-56
-
-
Finet, C.1
Berne-Dedieu, A.2
Scutt, C.P.3
Marlétaz, F.4
-
28
-
-
40449132719
-
Biofuels and implications for agricultural water use: blue impacts of green energy
-
de Fraiture, C., Giordano, M. and Liao, Y. (2008) Biofuels and implications for agricultural water use: blue impacts of green energy. Water Policy, 10, 67-81.
-
(2008)
Water Policy
, vol.10
, pp. 67-81
-
-
de Fraiture, C.1
Giordano, M.2
Liao, Y.3
-
29
-
-
84862800354
-
Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production
-
Fu, C., Sunkar, R., Zhou, C., Shen, H., Zhang, J.-Y., Matts, J., Wolf, J., Mann, D.G.J., Stewart, C.N., Tang, Y. and Wang, Z.-Y. (2012) Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnol. J. 10, 4, 443-452.
-
(2012)
Plant Biotechnol. J.
, vol.10
, Issue.4
, pp. 443-452
-
-
Fu, C.1
Sunkar, R.2
Zhou, C.3
Shen, H.4
Zhang, J.-Y.5
Matts, J.6
Wolf, J.7
Mann, D.G.J.8
Stewart, C.N.9
Tang, Y.10
Wang, Z.-Y.11
-
30
-
-
84895826439
-
Identifying microRNAs and transcript targets in Jatropha seeds
-
Galli, V., Guzman, F., de Oliveira, L.F., Loss-Morais, G., Korbes, A.P., Silva, S.D., Margis-Pinheiro, M.M. and Margis, R. (2014) Identifying microRNAs and transcript targets in Jatropha seeds. PLoS ONE, 9, e83727.
-
(2014)
PLoS ONE
, vol.9
, pp. e83727
-
-
Galli, V.1
Guzman, F.2
de Oliveira, L.F.3
Loss-Morais, G.4
Korbes, A.P.5
Silva, S.D.6
Margis-Pinheiro, M.M.7
Margis, R.8
-
31
-
-
33846904347
-
The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings
-
Gandikota, M., Birkenbihl, R.P., Höhmann, S., Cardon, G.H., Saedler, H. and Huijser, P. (2007) The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings. Plant J. 49, 683-693.
-
(2007)
Plant J.
, vol.49
, pp. 683-693
-
-
Gandikota, M.1
Birkenbihl, R.P.2
Höhmann, S.3
Cardon, G.H.4
Saedler, H.5
Huijser, P.6
-
32
-
-
84926328925
-
Genetic engineering of crop plants for abiotic stress tolerance
-
(Ahmad, P. and Rasool, S., eds) -. San Diego: Academic Press.
-
Goel, S. and Madan, B. (2014) Genetic engineering of crop plants for abiotic stress tolerance. In Emerging Technologies and Management of Crop Stress Tolerance (Ahmad, P. and Rasool, S., eds), pp. 99-123. San Diego: Academic Press.
-
(2014)
Emerging Technologies and Management of Crop Stress Tolerance
, pp. 99-123
-
-
Goel, S.1
Madan, B.2
-
33
-
-
78049311698
-
Gene flow of transgenic seed-expressed traits: biosafety considerations
-
Gressel, J. (2010) Gene flow of transgenic seed-expressed traits: biosafety considerations. Plant Sci. 179, 630-634.
-
(2010)
Plant Sci.
, vol.179
, pp. 630-634
-
-
Gressel, J.1
-
34
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones, S., Grocock, R.J., van Dongen, S., Bateman, A. and Enright, A.J. (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 34, D140-D144.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D140-D144
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
35
-
-
84868193851
-
miRNA-miRNA interaction implicates for potential mutual regulatory pattern
-
Guo, L., Sun, B., Wu, Q., Yang, S. and Chen, F. (2012) miRNA-miRNA interaction implicates for potential mutual regulatory pattern. Gene, 511, 187-194.
-
(2012)
Gene
, vol.511
, pp. 187-194
-
-
Guo, L.1
Sun, B.2
Wu, Q.3
Yang, S.4
Chen, F.5
-
36
-
-
72049120376
-
Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance
-
Gutierrez, L., Bussell, J.D., Pacurar, D.I., Schwambach, J., Pacurar, M. and Bellini, C. (2009) Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell, 21, 3119-3132.
-
(2009)
Plant Cell
, vol.21
, pp. 3119-3132
-
-
Gutierrez, L.1
Bussell, J.D.2
Pacurar, D.I.3
Schwambach, J.4
Pacurar, M.5
Bellini, C.6
-
37
-
-
77955101812
-
Computational methods to identify miRNA targets
-
Hammell, M. (2010) Computational methods to identify miRNA targets. Semin. Cell Dev. Biol. 21, 738-744.
-
(2010)
Semin. Cell Dev. Biol.
, vol.21
, pp. 738-744
-
-
Hammell, M.1
-
38
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
He, L. and Hannon, G.J. (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet. 5, 522-531.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
39
-
-
34547666808
-
The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches
-
Hirel, B., Le Gouis, J., Ney, B. and Gallais, A. (2007) The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches. J. Exp. Bot. 58, 2369-2387.
-
(2007)
J. Exp. Bot.
, vol.58
, pp. 2369-2387
-
-
Hirel, B.1
Le Gouis, J.2
Ney, B.3
Gallais, A.4
-
40
-
-
84856580517
-
Organ size regulation in plants: insights from compensation
-
Horiguchi, G. and Tsukaya, H. (2011) Organ size regulation in plants: insights from compensation. Front. Plant Sci. 2, 24.
-
(2011)
Front. Plant Sci.
, vol.2
, pp. 24
-
-
Horiguchi, G.1
Tsukaya, H.2
-
41
-
-
80052443858
-
The control of developmental phase transitions in plants
-
Huijser, P. and Schmid, M. (2011) The control of developmental phase transitions in plants. Development, 138, 4117-4129.
-
(2011)
Development
, vol.138
, pp. 4117-4129
-
-
Huijser, P.1
Schmid, M.2
-
42
-
-
84869998333
-
Methods for validation of miRNA sequence variants and the cleavage of their targets
-
Jeong, D.-H. and Green, P.J. (2012) Methods for validation of miRNA sequence variants and the cleavage of their targets. Methods, 58, 135-143.
-
(2012)
Methods
, vol.58
, pp. 135-143
-
-
Jeong, D.-H.1
Green, P.J.2
-
43
-
-
84890844310
-
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
-
Jeong, D.H., Schmidt, S.A., Rymarquis, L.A., Park, S., Ganssmann, M., German, M.A., Accerbi, M., Zhai, J., Fahlgren, N., Fox, S.E., Garvin, D.F., Mockler, T.C., Carrington, J.C., Meyers, B.C. and Green, P.J. (2013a) Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biol. 14, R145.
-
(2013)
Genome Biol.
, vol.14
, pp. R145
-
-
Jeong, D.H.1
Schmidt, S.A.2
Rymarquis, L.A.3
Park, S.4
Ganssmann, M.5
German, M.A.6
Accerbi, M.7
Zhai, J.8
Fahlgren, N.9
Fox, S.E.10
Garvin, D.F.11
Mockler, T.C.12
Carrington, J.C.13
Meyers, B.C.14
Green, P.J.15
-
44
-
-
84879704714
-
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage
-
Jeong, D.H., Thatcher, S.R., Brown, R.S., Zhai, J., Park, S., Rymarquis, L.A., Meyers, B.C. and Green, P.J. (2013b) Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiol. 162, 1225-1245.
-
(2013)
Plant Physiol.
, vol.162
, pp. 1225-1245
-
-
Jeong, D.H.1
Thatcher, S.R.2
Brown, R.S.3
Zhai, J.4
Park, S.5
Rymarquis, L.A.6
Meyers, B.C.7
Green, P.J.8
-
45
-
-
79953744170
-
ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis
-
Ji, L., Liu, X., Yan, J., Wang, W., Yumul, R.E., Kim, Y.J., Dinh, T.T., Liu, J., Cui, X., Zheng, B., Agarwal, M., Liu, C., Cao, X., Tang, G. and Chen, X. (2011) ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis. PLoS Genet. 7, e1001358.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1001358
-
-
Ji, L.1
Liu, X.2
Yan, J.3
Wang, W.4
Yumul, R.E.5
Kim, Y.J.6
Dinh, T.T.7
Liu, J.8
Cui, X.9
Zheng, B.10
Agarwal, M.11
Liu, C.12
Cao, X.13
Tang, G.14
Chen, X.15
-
46
-
-
84876799230
-
MicroRNAs and their cross-talks in plant development
-
Jin, D., Wang, Y., Zhao, Y. and Shen, M. (2013) MicroRNAs and their cross-talks in plant development. J. Genet. Genomics, 40, 161-170.
-
(2013)
J. Genet. Genomics
, vol.40
, pp. 161-170
-
-
Jin, D.1
Wang, Y.2
Zhao, Y.3
Shen, M.4
-
47
-
-
84869751747
-
Evaluating methods for isolating total rna and predicting the success of sequencing phylogenetically diverse plant transcriptomes
-
Johnson, M.T.J., Carpenter, E.J., Tian, Z., Bruskiewich, R., Burris, J.N., Carrigan, C.T., Chase, M.W., Clarke, N.D., Covshoff, S., dePamphilis, C.W., Edger, P.P., Goh, F., Graham, S., Greiner, S., Hibberd, J.M., Jordon-Thaden, I., Kutchan, T.M., Leebens-Mack, J., Melkonian, M., Miles, N., Myburg, H., Patterson, J., Pires, J.C., Ralph, P., Rolf, M., Sage, R.F., Soltis, D., Soltis, P., Stevenson, D., Stewart, C.N. Jr, Surek, B., Thomsen, C.J.M., Villarreal, J.C., Wu, X., Zhang, Y., Deyholos, M.K. and Wong, G.K.-S. (2012) Evaluating methods for isolating total rna and predicting the success of sequencing phylogenetically diverse plant transcriptomes. PLoS ONE, 7, e50226.
-
(2012)
PLoS ONE
, vol.7
, pp. e50226
-
-
Johnson, M.T.J.1
Carpenter, E.J.2
Tian, Z.3
Bruskiewich, R.4
Burris, J.N.5
Carrigan, C.T.6
Chase, M.W.7
Clarke, N.D.8
Covshoff, S.9
dePamphilis, C.W.10
Edger, P.P.11
Goh, F.12
Graham, S.13
Greiner, S.14
Hibberd, J.M.15
Jordon-Thaden, I.16
Kutchan, T.M.17
Leebens-Mack, J.18
Melkonian, M.19
Miles, N.20
Myburg, H.21
Patterson, J.22
Pires, J.C.23
Ralph, P.24
Rolf, M.25
Sage, R.F.26
Soltis, D.27
Soltis, P.28
Stevenson, D.29
Stewart Jr, C.N.30
Surek, B.31
Thomsen, C.J.M.32
Villarreal, J.C.33
Wu, X.34
Zhang, Y.35
Deyholos, M.K.36
Wong, G.-S.37
more..
-
48
-
-
84890447855
-
Pleiotropic constraints, expression level, and the evolution of miRNA sequences
-
Jovelin, R. (2013) Pleiotropic constraints, expression level, and the evolution of miRNA sequences. J. Mol. Evol. 77, 206-220.
-
(2013)
J. Mol. Evol.
, vol.77
, pp. 206-220
-
-
Jovelin, R.1
-
49
-
-
84864949461
-
Designing the perfect plant feedstock for biofuel production: using the whole buffalo to diversify fuels and products
-
Joyce, B.L. and Stewart, C.N. Jr. (2012) Designing the perfect plant feedstock for biofuel production: using the whole buffalo to diversify fuels and products. Biotechnol. Adv. 30, 1011-1022.
-
(2012)
Biotechnol. Adv.
, vol.30
, pp. 1011-1022
-
-
Joyce, B.L.1
Stewart Jr, C.N.2
-
50
-
-
84856658756
-
Modifying crops to increase cell wall digestibility
-
Jung, H.J., Samac, D.A. and Sarath, G. (2012) Modifying crops to increase cell wall digestibility. Plant Sci. 185-186, 65-77.
-
(2012)
Plant Sci.
, vol.185-186
, pp. 65-77
-
-
Jung, H.J.1
Samac, D.A.2
Sarath, G.3
-
51
-
-
84867205057
-
Characterization of microRNAs expression during maize seed development
-
Kang, M., Zhao, Q., Zhu, D. and Yu, J. (2012) Characterization of microRNAs expression during maize seed development. BMC Genom. 13, 360.
-
(2012)
BMC Genom.
, vol.13
, pp. 360
-
-
Kang, M.1
Zhao, Q.2
Zhu, D.3
Yu, J.4
-
52
-
-
84860904680
-
Identification of miRNAs in sorghum by using bioinformatics approach
-
Katiyar, A., Smita, S., Chinnusamy, V., Pandey, D.M. and Bansal, K. (2012) Identification of miRNAs in sorghum by using bioinformatics approach. Plant Signal Behav. 7, 246-259.
-
(2012)
Plant Signal Behav.
, vol.7
, pp. 246-259
-
-
Katiyar, A.1
Smita, S.2
Chinnusamy, V.3
Pandey, D.M.4
Bansal, K.5
-
53
-
-
77958019268
-
Transgenic perennial biofuel feedstocks and strategies for bioconfinement
-
Kausch, A.P., Hague, J., Oliver, M., Li, Y., Daniell, H., Mascia, P., Watrud, L.S. and Stewart, C.N. (2010) Transgenic perennial biofuel feedstocks and strategies for bioconfinement. Biofuels, 1, 163-176.
-
(2010)
Biofuels
, vol.1
, pp. 163-176
-
-
Kausch, A.P.1
Hague, J.2
Oliver, M.3
Li, Y.4
Daniell, H.5
Mascia, P.6
Watrud, L.S.7
Stewart, C.N.8
-
54
-
-
84856594225
-
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
-
Khraiwesh, B., Zhu, J.K. and Zhu, J. (2012) Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochem. Biophys. Acta. 1819, 137-148.
-
(2012)
Biochem. Biophys. Acta.
, vol.1819
, pp. 137-148
-
-
Khraiwesh, B.1
Zhu, J.K.2
Zhu, J.3
-
56
-
-
60749101298
-
Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis
-
Kim, J.H., Woo, H.R., Kim, J., Lim, P.O., Lee, I.C., Choi, S.H., Hwang, D. and Nam, H.G. (2009) Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science, 323, 1053-1057.
-
(2009)
Science
, vol.323
, pp. 1053-1057
-
-
Kim, J.H.1
Woo, H.R.2
Kim, J.3
Lim, P.O.4
Lee, I.C.5
Choi, S.H.6
Hwang, D.7
Nam, H.G.8
-
57
-
-
81555215086
-
Comparative study on enzymatic digestibility of switchgrass varieties and harvests processed by leading pretreatment technologies
-
Kim, Y., Mosier, N.S., Ladisch, M.R., Pallapolu, V.R., Lee, Y.Y., Garlock, R., Balan, V., Dale, B.E., Donohoe, B.S., Vinzant, T.B., Elander, R.T., Falls, M., Sierra, R., Holtzapple, M.T., Shi, J., Ebrik, M.A., Redmond, T., Yang, B., Wyman, C.E. and Warner, R.E. (2011) Comparative study on enzymatic digestibility of switchgrass varieties and harvests processed by leading pretreatment technologies. Bioresour. Technol. 102, 11089-11096.
-
(2011)
Bioresour. Technol.
, vol.102
, pp. 11089-11096
-
-
Kim, Y.1
Mosier, N.S.2
Ladisch, M.R.3
Pallapolu, V.R.4
Lee, Y.Y.5
Garlock, R.6
Balan, V.7
Dale, B.E.8
Donohoe, B.S.9
Vinzant, T.B.10
Elander, R.T.11
Falls, M.12
Sierra, R.13
Holtzapple, M.T.14
Shi, J.15
Ebrik, M.A.16
Redmond, T.17
Yang, B.18
Wyman, C.E.19
Warner, R.E.20
more..
-
58
-
-
84905026636
-
Gene regulatory cascade of senescence-associated NAC transcription factors activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in Arabidopsis
-
Kim, H.J., Hong, S.H., Kim, Y.W., Lee, I.H., Jun, J.H., Phee, B.-K., Rupak, T., Jeong, H., Lee, Y., Hong, B.S., Nam, H.G., Woo, H.R. and Lim, P.O. (2014) Gene regulatory cascade of senescence-associated NAC transcription factors activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in Arabidopsis. J. Exp. Bot. 65, 4023-4036.
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 4023-4036
-
-
Kim, H.J.1
Hong, S.H.2
Kim, Y.W.3
Lee, I.H.4
Jun, J.H.5
Phee, B.-K.6
Rupak, T.7
Jeong, H.8
Lee, Y.9
Hong, B.S.10
Nam, H.G.11
Woo, H.R.12
Lim, P.O.13
-
59
-
-
37349042903
-
Experimental validation of miRNA targets
-
Kuhn, D.E., Martin, M.M., Feldman, D.S., Terry, A.V. Jr, Nuovo, G.J. and Elton, T.S. (2008) Experimental validation of miRNA targets. Methods, 44, 47-54.
-
(2008)
Methods
, vol.44
, pp. 47-54
-
-
Kuhn, D.E.1
Martin, M.M.2
Feldman, D.S.3
Terry Jr, A.V.4
Nuovo, G.J.5
Elton, T.S.6
-
60
-
-
65249115211
-
Methods for pretreatment of lignocellulosic biomass for efficient hydrolysis and biofuel production
-
Kumar, P., Barrett, D.M., Delwiche, M.J. and Stroeve, P. (2009) Methods for pretreatment of lignocellulosic biomass for efficient hydrolysis and biofuel production. Ind. Eng. Chem. Res. 48, 3713-3729.
-
(2009)
Ind. Eng. Chem. Res.
, vol.48
, pp. 3713-3729
-
-
Kumar, P.1
Barrett, D.M.2
Delwiche, M.J.3
Stroeve, P.4
-
61
-
-
79956109505
-
Transgene introgression in crop relatives: molecular evidence and mitigation strategies
-
Kwit, C., Moon, H.S., Warwick, S.I. and Stewart, C.N. Jr. (2011) Transgene introgression in crop relatives: molecular evidence and mitigation strategies. Trends Biotechnol. 29, 284-293.
-
(2011)
Trends Biotechnol.
, vol.29
, pp. 284-293
-
-
Kwit, C.1
Moon, H.S.2
Warwick, S.I.3
Stewart Jr, C.N.4
-
62
-
-
84877359314
-
Energy and greenhouse gas balances of cassava-based ethanol
-
Le, L.T., van Ierland, E.C., Zhu, X. and Wesseler, J. (2013) Energy and greenhouse gas balances of cassava-based ethanol. Biomass Bioenergy, 51, 125-135.
-
(2013)
Biomass Bioenergy
, vol.51
, pp. 125-135
-
-
Le, L.T.1
van Ierland, E.C.2
Zhu, X.3
Wesseler, J.4
-
63
-
-
77349099230
-
Characterization and expression analysis of the Arabidopsis mir169 family
-
Li, Y., Fu, Y., Ji, L., Wu, C. and Zheng, C. (2010) Characterization and expression analysis of the Arabidopsis mir169 family. Plant Sci. 178, 271-280.
-
(2010)
Plant Sci.
, vol.178
, pp. 271-280
-
-
Li, Y.1
Fu, Y.2
Ji, L.3
Wu, C.4
Zheng, C.5
-
64
-
-
84886580228
-
ETHYLENE-INSENSITIVE3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis
-
Li, Z., Peng, J., Wen, X. and Guo, H. (2013) ETHYLENE-INSENSITIVE3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis. Plant Cell, 25, 3311-3328.
-
(2013)
Plant Cell
, vol.25
, pp. 3311-3328
-
-
Li, Z.1
Peng, J.2
Wen, X.3
Guo, H.4
-
65
-
-
84931829296
-
MYB transcription factors, active players in abiotic stress signaling
-
In Press.
-
Li, C., Ng, C.K.Y. and Fan, L.-M. (2014) MYB transcription factors, active players in abiotic stress signaling. Environ. Exp. Bot. In Press. DOI: doi: 10.1016/j.envexpbot.2014.06.014
-
(2014)
Environ. Exp. Bot.
-
-
Li, C.1
Ng, C.K.Y.2
Fan, L.-M.3
-
66
-
-
84882695325
-
Dissecting and engineering metabolic and regulatory networks of thermophilic bacteria for biofuel production
-
Lin, L. and Xu, J. (2013) Dissecting and engineering metabolic and regulatory networks of thermophilic bacteria for biofuel production. Biotechnol. Adv. 31, 827-837.
-
(2013)
Biotechnol. Adv.
, vol.31
, pp. 827-837
-
-
Lin, L.1
Xu, J.2
-
67
-
-
63449106817
-
Improvements in life cycle energy efficiency and greenhouse gas emissions of corn-ethanol
-
Liska, A., Yang, H., Bremer, V.R., Klopfenstein, T.J., Walters, D.T., Erickson, G.E. and Cassman, K.G. (2009) Improvements in life cycle energy efficiency and greenhouse gas emissions of corn-ethanol. J. Ind. Ecol. 13, 58-74.
-
(2009)
J. Ind. Ecol.
, vol.13
, pp. 58-74
-
-
Liska, A.1
Yang, H.2
Bremer, V.R.3
Klopfenstein, T.J.4
Walters, D.T.5
Erickson, G.E.6
Cassman, K.G.7
-
68
-
-
77954289996
-
Identification and application of a rice senescence-associated promoter
-
Liu, L., Zhou, Y., Szczerba, M.W., Li, X. and Lin, Y. (2010) Identification and application of a rice senescence-associated promoter. Plant Phys. 153, 1239-1249.
-
(2010)
Plant Phys.
, vol.153
, pp. 1239-1249
-
-
Liu, L.1
Zhou, Y.2
Szczerba, M.W.3
Li, X.4
Lin, Y.5
-
69
-
-
84886092842
-
Advanced genetic tools for plant biotechnology
-
Liu, W., Yuan, J.S. and Stewart, C.N., Jr. (2013a) Advanced genetic tools for plant biotechnology. Nat. Rev. Genet. 14, 781-793.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 781-793
-
-
Liu, W.1
Yuan, J.S.2
Stewart, C.N.3
-
70
-
-
84881016308
-
Consequences of gene flow between oilseed rape (Brassica napus) and its relatives
-
Liu, Y., Wei, W., Ma, K., Li, J., Liang, Y. and Darmency, H. (2013b) Consequences of gene flow between oilseed rape (Brassica napus) and its relatives. Plant Sci. 211, 42-51.
-
(2013)
Plant Sci.
, vol.211
, pp. 42-51
-
-
Liu, Y.1
Wei, W.2
Ma, K.3
Li, J.4
Liang, Y.5
Darmency, H.6
-
71
-
-
84893697668
-
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis
-
Liu, Z., Kong, L., Zhang, M., Lv, Y., Liu, Y., Zou, M., Lu, G., Cao, J. and Yu, X. (2013c) Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis. PLoS ONE, 8, e83444.
-
(2013)
PLoS ONE
, vol.8
, pp. e83444
-
-
Liu, Z.1
Kong, L.2
Zhang, M.3
Lv, Y.4
Liu, Y.5
Zou, M.6
Lu, G.7
Cao, J.8
Yu, X.9
-
72
-
-
84896315814
-
Microbial pretreatment of corn stovers by solid-state cultivation of Phanerochaete chrysosporium for biogas production
-
Liu, S., Wu, S., Pang, C., Li, W. and Dong, R. (2014a) Microbial pretreatment of corn stovers by solid-state cultivation of Phanerochaete chrysosporium for biogas production. Appl. Biochem. Biotechnol. 172, 1365-1376.
-
(2014)
Appl. Biochem. Biotechnol.
, vol.172
, pp. 1365-1376
-
-
Liu, S.1
Wu, S.2
Pang, C.3
Li, W.4
Dong, R.5
-
73
-
-
84925969416
-
Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters
-
Liu, W., Mazarei, M., Peng, Y., Fethe, M.H., Rudis, M.R., Lin, J., Millwood, R.J., Arelli, P.R. and Stewart, C.N., Jr. (2014b) Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters. Plant Biotechnol. J. 12, 8 1015-1026.
-
(2014)
Plant Biotechnol. J.
, vol.12
, Issue.8
, pp. 1015-1026
-
-
Liu, W.1
Mazarei, M.2
Peng, Y.3
Fethe, M.H.4
Rudis, M.R.5
Lin, J.6
Millwood, R.J.7
Arelli, P.R.8
Stewart, C.N.9
-
74
-
-
27744471144
-
Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
-
Lu, S., Sun, Y.H., Shi, R., Clark, C., Li, L. and Chiang, V.L. (2005) Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell, 17, 2186-2203.
-
(2005)
Plant Cell
, vol.17
, pp. 2186-2203
-
-
Lu, S.1
Sun, Y.H.2
Shi, R.3
Clark, C.4
Li, L.5
Chiang, V.L.6
-
75
-
-
47249095055
-
Stress-responsive microRNAs in Populus
-
Lu, S., Sun, Y.H. and Chiang, V.L. (2008) Stress-responsive microRNAs in Populus. Plant J. 55, 131-151.
-
(2008)
Plant J.
, vol.55
, pp. 131-151
-
-
Lu, S.1
Sun, Y.H.2
Chiang, V.L.3
-
76
-
-
64549161034
-
Adenylation of plant miRNAs
-
Lu, S., Sun, Y.-H. and Chiang, V.L. (2009) Adenylation of plant miRNAs. Nucleic Acids Res. 37, 1878-1885.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1878-1885
-
-
Lu, S.1
Sun, Y.-H.2
Chiang, V.L.3
-
77
-
-
84892443628
-
Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection
-
Lucas, S.J., Bastas, K. and Budak, H. (2014) Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection. Gene, 536, 254-264.
-
(2014)
Gene
, vol.536
, pp. 254-264
-
-
Lucas, S.J.1
Bastas, K.2
Budak, H.3
-
78
-
-
84879887979
-
Evolutionary conservation of microRNA regulatory programs in plant flower development
-
Luo, Y., Guo, Z. and Li, L. (2013) Evolutionary conservation of microRNA regulatory programs in plant flower development. Dev. Biol. 380, 133-144.
-
(2013)
Dev. Biol.
, vol.380
, pp. 133-144
-
-
Luo, Y.1
Guo, Z.2
Li, L.3
-
79
-
-
77953193344
-
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin, E., Jouannet, V., Herz, A., Lokerse, A.S., Weijers, D., Vaucheret, H., Nussaume, L., Crespi, M.D. and Maizel, A. (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell, 22, 1104-1117.
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, L.7
Crespi, M.D.8
Maizel, A.9
-
80
-
-
33846490889
-
Plant lipid binding proteins: properties and applications
-
Marion, D., Bakan, B. and Elmorjani, K. (2007) Plant lipid binding proteins: properties and applications. Biotechnol. Adv. 25, 195-197.
-
(2007)
Biotechnol. Adv.
, vol.25
, pp. 195-197
-
-
Marion, D.1
Bakan, B.2
Elmorjani, K.3
-
81
-
-
77952965888
-
microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress
-
Martin, R.C., Liu, P.P., Goloviznina, N.A. and Nonogaki, H. (2010) microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress. J. Exp. Bot. 61, 2229-2234.
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 2229-2234
-
-
Martin, R.C.1
Liu, P.P.2
Goloviznina, N.A.3
Nonogaki, H.4
-
82
-
-
84898751980
-
Biofuel: policy, standardization and recommendation for sustainable future energy supply
-
Masjuki, H.H., Kalam, M.A., Mofijur, M. and Shahabuddin, M. (2013) Biofuel: policy, standardization and recommendation for sustainable future energy supply. Energy Procedia, 42, 577-586.
-
(2013)
Energy Procedia
, vol.42
, pp. 577-586
-
-
Masjuki, H.H.1
Kalam, M.A.2
Mofijur, M.3
Shahabuddin, M.4
-
83
-
-
77953129094
-
Identification of microRNAs and their targets in switchgrass, a model biofuel plant species
-
Matts, J., Jagadeeswaran, G., Roe, B.A. and Sunkar, R. (2010) Identification of microRNAs and their targets in switchgrass, a model biofuel plant species. J. Plant Physiol. 167, 896-904.
-
(2010)
J. Plant Physiol.
, vol.167
, pp. 896-904
-
-
Matts, J.1
Jagadeeswaran, G.2
Roe, B.A.3
Sunkar, R.4
-
84
-
-
84869866763
-
Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
-
Mehrpooyan, F., Othman, R.Y. and Harikrishna, J.A. (2012) Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.). Tree Genet. Genomes, 8, 1331-1343.
-
(2012)
Tree Genet. Genomes
, vol.8
, pp. 1331-1343
-
-
Mehrpooyan, F.1
Othman, R.Y.2
Harikrishna, J.A.3
-
85
-
-
79960024314
-
Toward microRNA-mediated gene regulatory networks in plants
-
Meng, Y., Shao, C. and Chen, M. (2011) Toward microRNA-mediated gene regulatory networks in plants. Brief. Bioinform. 12, 645-659.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 645-659
-
-
Meng, Y.1
Shao, C.2
Chen, M.3
-
86
-
-
85027952469
-
Trends in bioconversion of lignocellulose: biofuels, platform chemicals & biorefinery concept
-
Menon, V. and Rao, M. (2012) Trends in bioconversion of lignocellulose: biofuels, platform chemicals & biorefinery concept. Prog. Energ. Combust. 38, 522-550.
-
(2012)
Prog. Energ. Combust.
, vol.38
, pp. 522-550
-
-
Menon, V.1
Rao, M.2
-
87
-
-
84873567679
-
The hunting of targets: challenge in miRNA research
-
Moqadam, A.F., Pieters, R. and den Boer, M.L. (2013) The hunting of targets: challenge in miRNA research. Leukemia, 27, 16-23.
-
(2013)
Leukemia
, vol.27
, pp. 16-23
-
-
Moqadam, A.F.1
Pieters, R.2
den Boer, M.L.3
-
88
-
-
84856594358
-
NAC transcription factors in plant abiotic stress responses
-
Nakashima, K., Takasaki, H., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2012) NAC transcription factors in plant abiotic stress responses. Biochem. Biophys. Acta. 1819, 97-103.
-
(2012)
Biochem. Biophys. Acta.
, vol.1819
, pp. 97-103
-
-
Nakashima, K.1
Takasaki, H.2
Mizoi, J.3
Shinozaki, K.4
Yamaguchi-Shinozaki, K.5
-
89
-
-
84862105782
-
Biogenesis, functions and fate of plant microRNAs
-
Naqvi, A.R., Sarwat, M., Hasan, S. and Roychodhury, N. (2012) Biogenesis, functions and fate of plant microRNAs. J. Cell. Physiol. 227, 3163-3168.
-
(2012)
J. Cell. Physiol.
, vol.227
, pp. 3163-3168
-
-
Naqvi, A.R.1
Sarwat, M.2
Hasan, S.3
Roychodhury, N.4
-
90
-
-
84888033341
-
Biofuels as a sustainable energy source: an update of the applications of proteomics in bioenergy crops and algae
-
Ndimba, B.K., Ndimba, R.J., Johnson, T.S., Waditee-Sirisattha, R., Baba, M., Sirisattha, S., Shiraiwa, Y., Agrawal, G.K. and Rakwal, R. (2013) Biofuels as a sustainable energy source: an update of the applications of proteomics in bioenergy crops and algae. J. Proteomics. 93, 234-244.
-
(2013)
J. Proteomics.
, vol.93
, pp. 234-244
-
-
Ndimba, B.K.1
Ndimba, R.J.2
Johnson, T.S.3
Waditee-Sirisattha, R.4
Baba, M.5
Sirisattha, S.6
Shiraiwa, Y.7
Agrawal, G.K.8
Rakwal, R.9
-
91
-
-
80052329245
-
Lignin variability in plant cell walls: contribution of new models
-
Neutelings, G. (2011) Lignin variability in plant cell walls: contribution of new models. Plant Sci. 181, 379-386.
-
(2011)
Plant Sci.
, vol.181
, pp. 379-386
-
-
Neutelings, G.1
-
92
-
-
77958081733
-
Production of liquid biofuels from renewable resources
-
Nigam, P.S. and Singh, A. (2011) Production of liquid biofuels from renewable resources. Prog. Energ. Combust. 37, 52-68.
-
(2011)
Prog. Energ. Combust.
, vol.37
, pp. 52-68
-
-
Nigam, P.S.1
Singh, A.2
-
93
-
-
41549124880
-
Brachypodium distachyon: making hay with a wild grass
-
Opanowicz, M., Vain, P., Draper, J., Parker, D. and Doonan, J.H. (2008) Brachypodium distachyon: making hay with a wild grass. Trends Plant Sci. 13, 172-177.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 172-177
-
-
Opanowicz, M.1
Vain, P.2
Draper, J.3
Parker, D.4
Doonan, J.H.5
-
94
-
-
84877943691
-
Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth
-
Ortiz-Morea, F.A., Vicentini, R., Silva, G.F., Silva, E.M., Carrer, H., Rodrigues, A.P. and Nogueira, F.T. (2013) Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth. J. Exp. Bot. 64, 2307-2320.
-
(2013)
J. Exp. Bot.
, vol.64
, pp. 2307-2320
-
-
Ortiz-Morea, F.A.1
Vicentini, R.2
Silva, G.F.3
Silva, E.M.4
Carrer, H.5
Rodrigues, A.P.6
Nogueira, F.T.7
-
95
-
-
84896266859
-
Microarray analysis of differentially expressed mRNAs and miRNAs in young leaves of sorghum under dry-down conditions
-
Pasini, L., Bergonti, M., Fracasso, A., Marocco, A. and Amaducci, S. (2014) Microarray analysis of differentially expressed mRNAs and miRNAs in young leaves of sorghum under dry-down conditions. J. Plant Physiol. 171, 537-548.
-
(2014)
J. Plant Physiol.
, vol.171
, pp. 537-548
-
-
Pasini, L.1
Bergonti, M.2
Fracasso, A.3
Marocco, A.4
Amaducci, S.5
-
96
-
-
84880831705
-
Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
-
Patanun, O., Lertpanyasampatha, M., Sojikul, P., Viboonjun, U. and Narangajavana, J. (2013) Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.). Mol. Biotechnol. 53, 257-269.
-
(2013)
Mol. Biotechnol.
, vol.53
, pp. 257-269
-
-
Patanun, O.1
Lertpanyasampatha, M.2
Sojikul, P.3
Viboonjun, U.4
Narangajavana, J.5
-
97
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson, A.H., Bowers, J.E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T., Poliakov, A., Schmutz, J., Spannagl, M., Tang, H., Wang, X., Wicker, T., Bharti, A.K., Chapman, J., Feltus, F.A., Gowik, U., Grigoriev, I.V., Lyons, E., Maher, C.A., Martis, M., Narechania, A., Otillar, R.P., Penning, B.W., Salamov, A.A., Wang, Y., Zhang, L., Carpita, N.C., Freeling, M., Gingle, A.R., Hash, C.T., Keller, B., Klein, P., Kresovich, S., McCann, M.C., Ming, R., Peterson, D.G., Mehboob ur, R., Ware, D., Westhoff, P., Mayer, K.F., Messing, J. and Rokhsar, D.S. (2009) The Sorghum bicolor genome and the diversification of grasses. Nature, 457, 551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
Schmutz, J.11
Spannagl, M.12
Tang, H.13
Wang, X.14
Wicker, T.15
Bharti, A.K.16
Chapman, J.17
Feltus, F.A.18
Gowik, U.19
Grigoriev, I.V.20
Lyons, E.21
Maher, C.A.22
Martis, M.23
Narechania, A.24
Otillar, R.P.25
Penning, B.W.26
Salamov, A.A.27
Wang, Y.28
Zhang, L.29
Carpita, N.C.30
Freeling, M.31
Gingle, A.R.32
Hash, C.T.33
Keller, B.34
Klein, P.35
Kresovich, S.36
McCann, M.C.37
Ming, R.38
Peterson, D.G.39
Mehboob ur, R.40
Ware, D.41
Westhoff, P.42
Mayer, K.F.43
Messing, J.44
Rokhsar, D.S.45
more..
-
98
-
-
84865142847
-
Microbial engineering for the production of advanced biofuels
-
Peralta-Yahya, P.P., Zhang, F., del Cardayre, S.B. and Keasling, J.D. (2012) Microbial engineering for the production of advanced biofuels. Nature, 488, 320-328.
-
(2012)
Nature
, vol.488
, pp. 320-328
-
-
Peralta-Yahya, P.P.1
Zhang, F.2
del Cardayre, S.B.3
Keasling, J.D.4
-
99
-
-
84860228070
-
Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis
-
Perez-Quintero, A.L., Quintero, A., Urrego, O., Vanegas, P. and Lopez, C. (2012) Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis. BMC Plant Biol. 12, 29.
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 29
-
-
Perez-Quintero, A.L.1
Quintero, A.2
Urrego, O.3
Vanegas, P.4
Lopez, C.5
-
100
-
-
84888825171
-
Improvement of lignocellulosic biomass in planta: a review of feedstocks, biomass recalcitrance, and strategic manipulation of ideal plants designed for ethanol production and processability
-
Phitsuwan, P., Sakka, K. and Ratanakhanokchai, K. (2013) Improvement of lignocellulosic biomass in planta: a review of feedstocks, biomass recalcitrance, and strategic manipulation of ideal plants designed for ethanol production and processability. Biomass Bioenergy, 58, 390-405.
-
(2013)
Biomass Bioenergy
, vol.58
, pp. 390-405
-
-
Phitsuwan, P.1
Sakka, K.2
Ratanakhanokchai, K.3
-
101
-
-
0025602622
-
Phase change and the regulation of shoot morphogenesis in plants
-
Poethig, R.S. (1990) Phase change and the regulation of shoot morphogenesis in plants. Science, 250, 923-930.
-
(1990)
Science
, vol.250
, pp. 923-930
-
-
Poethig, R.S.1
-
102
-
-
84912005881
-
Altered lignin biosynthesis using biotechnology to improve lignocellulosic biofuel feedstocks
-
Poovaiah, C.R., Nageswara-Rao, M., Soneji, J.R., Baxter, H.L. and Stewart, C.N. (2014) Altered lignin biosynthesis using biotechnology to improve lignocellulosic biofuel feedstocks. Plant Biotechnol. J. 12, 9, 1163-1173.
-
(2014)
Plant Biotechnol. J.
, vol.12
, Issue.9
, pp. 1163-1173
-
-
Poovaiah, C.R.1
Nageswara-Rao, M.2
Soneji, J.R.3
Baxter, H.L.4
Stewart, C.N.5
-
103
-
-
84857443387
-
Stem sugar accumulation in sweet sorghum - activity and expression of sucrose metabolizing enzymes and sucrose transporters
-
Qazi, H.A., Paranjpe, S. and Bhargava, S. (2012) Stem sugar accumulation in sweet sorghum - activity and expression of sucrose metabolizing enzymes and sucrose transporters. J. Plant Physiol. 169, 605-613.
-
(2012)
J. Plant Physiol.
, vol.169
, pp. 605-613
-
-
Qazi, H.A.1
Paranjpe, S.2
Bhargava, S.3
-
104
-
-
84879780279
-
Identification of ta-siRNAs and cis-nat-siRNAs in cassava and their roles in response to cassava bacterial blight
-
Quintero, A., Perez-Quintero, A.L. and Lopez, C. (2013) Identification of ta-siRNAs and cis-nat-siRNAs in cassava and their roles in response to cassava bacterial blight. Genom. Proteom. Bioinform. 11, 172-181.
-
(2013)
Genom. Proteom. Bioinform.
, vol.11
, pp. 172-181
-
-
Quintero, A.1
Perez-Quintero, A.L.2
Lopez, C.3
-
105
-
-
84857319061
-
Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana
-
Ren, L. and Tang, G. (2012) Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Sci. 187, 59-68.
-
(2012)
Plant Sci.
, vol.187
, pp. 59-68
-
-
Ren, L.1
Tang, G.2
-
106
-
-
41649118006
-
Think you know how miRNAs work? Think again
-
Richter, J.D. (2008) Think you know how miRNAs work? Think again. Nat. Struct. Mol. Biol. 15, 334-336.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 334-336
-
-
Richter, J.D.1
-
107
-
-
84879073965
-
Constitutive expression of the Corngrass1 microRNA in poplar affects plant architecture and stem lignin content and composition
-
Rubinelli, P., Chuck, G., Xu, L. and Meilan, R. (2013) Constitutive expression of the Corngrass1 microRNA in poplar affects plant architecture and stem lignin content and composition. Biomass Bioenergy, 54, 312-321.
-
(2013)
Biomass Bioenergy
, vol.54
, pp. 312-321
-
-
Rubinelli, P.1
Chuck, G.2
Xu, L.3
Meilan, R.4
-
108
-
-
84875994369
-
Coordination of flower maturation by a regulatory circuit of three microRNAs
-
Rubio-Somoza, I. and Weigel, D. (2013) Coordination of flower maturation by a regulatory circuit of three microRNAs. PLoS Genet. 9, e1003374.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003374
-
-
Rubio-Somoza, I.1
Weigel, D.2
-
109
-
-
84881027399
-
Gene use restriction technologies for transgenic plant bioconfinement
-
Sang, Y., Millwood, R. and Stewart, C.N., Jr. (2013) Gene use restriction technologies for transgenic plant bioconfinement. Plant Biotechnol. J. 11, 649-658.
-
(2013)
Plant Biotechnol. J.
, vol.11
, pp. 649-658
-
-
Sang, Y.1
Millwood, R.2
Stewart, C.N.3
-
110
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab, R., Palatnik, J.F., Riester, M., Schommer, C., Schmid, M. and Weigel, D. (2005) Specific effects of microRNAs on the plant transcriptome. Dev. Cell, 8, 517-527.
-
(2005)
Dev. Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
111
-
-
84947033320
-
Quantitative trait loci (QTL) underlying biomass yield and plant height in switchgrass
-
Serba, D.D., Daverdin, G., Bouton, J.H., Devos, K.M., Brummer, E.C. and Saha, M.C. (2014) Quantitative trait loci (QTL) underlying biomass yield and plant height in switchgrass. BioEnerg. Res. DOI 10.1007/s12155-014-9523-8.
-
(2014)
BioEnerg. Res.
-
-
Serba, D.D.1
Daverdin, G.2
Bouton, J.H.3
Devos, K.M.4
Brummer, E.C.5
Saha, M.C.6
-
112
-
-
84894058440
-
Effects of microbial and non-microbial factors of liquid anaerobic digestion effluent as inoculum on solid-state anaerobic digestion of corn stover
-
Shi, J., Xu, F., Wang, Z., Stiverson, J.A., Yu, Z. and Li, Y. (2014) Effects of microbial and non-microbial factors of liquid anaerobic digestion effluent as inoculum on solid-state anaerobic digestion of corn stover. Bioresour. Technol. 157, 188-196.
-
(2014)
Bioresour. Technol.
, vol.157
, pp. 188-196
-
-
Shi, J.1
Xu, F.2
Wang, Z.3
Stiverson, J.A.4
Yu, Z.5
Li, Y.6
-
113
-
-
84875899751
-
Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
-
Shuai, P., Liang, D., Zhang, Z., Yin, W. and Xia, X. (2013) Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis. BMC Genom. 14, 233.
-
(2013)
BMC Genom.
, vol.14
, pp. 233
-
-
Shuai, P.1
Liang, D.2
Zhang, Z.3
Yin, W.4
Xia, X.5
-
114
-
-
77955624887
-
Feedstocks for lignocellulosic biofuels
-
Somerville, C., Youngs, H., Taylor, C., Davis, S.C. and Long, S.P. (2010) Feedstocks for lignocellulosic biofuels. Science, 329, 790-792.
-
(2010)
Science
, vol.329
, pp. 790-792
-
-
Somerville, C.1
Youngs, H.2
Taylor, C.3
Davis, S.C.4
Long, S.P.5
-
115
-
-
84874677498
-
A comparison of methods for differential expression analysis of RNA-seq data
-
Soneson, C. and Delorenzi, M. (2013) A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinf. 14, 91.
-
(2013)
BMC Bioinf.
, vol.14
, pp. 91
-
-
Soneson, C.1
Delorenzi, M.2
-
116
-
-
84901417366
-
Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors
-
Stief, A., Altmann, S., Hoffmann, K., Pant, B.D., Scheible, W.R. and Bäurle, I. (2014) Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors. Plant Cell, 26, 1792-1807.
-
(2014)
Plant Cell
, vol.26
, pp. 1792-1807
-
-
Stief, A.1
Altmann, S.2
Hoffmann, K.3
Pant, B.D.4
Scheible, W.R.5
Bäurle, I.6
-
117
-
-
84888416432
-
Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis
-
Su, Z., Ma, X., Guo, H., Sukiran, N.L., Guo, B., Assmann, S.M. and Ma, H. (2013) Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis. Plant Cell, 25, 3785-3807.
-
(2013)
Plant Cell
, vol.25
, pp. 3785-3807
-
-
Su, Z.1
Ma, X.2
Guo, H.3
Sukiran, N.L.4
Guo, B.5
Assmann, S.M.6
Ma, H.7
-
118
-
-
84862162512
-
An approach for Jatropha improvement using pleiotropic QTLs regulating plant growth and seed yield
-
Sun, F., Liu, P., Ye, J., Lo, L., Cao, S., Li, L., Yue, G. and Wang, C. (2012a) An approach for Jatropha improvement using pleiotropic QTLs regulating plant growth and seed yield. Biotechnol. Biofuels, 5, 1-10.
-
(2012)
Biotechnol. Biofuels
, vol.5
, pp. 1-10
-
-
Sun, F.1
Liu, P.2
Ye, J.3
Lo, L.4
Cao, S.5
Li, L.6
Yue, G.7
Wang, C.8
-
119
-
-
84859073075
-
MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress
-
Sun, G., Stewart, C.N. Jr, Xiao, P. and Zhang, B. (2012b) MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress. PLoS ONE, 7, e32017.
-
(2012)
PLoS ONE
, vol.7
, pp. e32017
-
-
Sun, G.1
Stewart Jr, C.N.2
Xiao, P.3
Zhang, B.4
-
120
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar, R. and Zhu, J.K. (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16, 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
121
-
-
84894472195
-
Evolutionary history of plant microRNAs
-
Taylor, R.S., Tarver, J.E., Hiscock, S.J. and Donoghue, P.C. (2014) Evolutionary history of plant microRNAs. Trends Plant Sci. 19, 175-182.
-
(2014)
Trends Plant Sci.
, vol.19
, pp. 175-182
-
-
Taylor, R.S.1
Tarver, J.E.2
Hiscock, S.J.3
Donoghue, P.C.4
-
122
-
-
77956456653
-
Sequencing bias: comparison of different protocols of microRNA library construction
-
Tian, G., Yin, X., Luo, H., Xu, X., Bolund, L., Zhang, X., Gan, S.Q. and Li, N. (2010) Sequencing bias: comparison of different protocols of microRNA library construction. BMC Biotechnol. 10, 64.
-
(2010)
BMC Biotechnol.
, vol.10
, pp. 64
-
-
Tian, G.1
Yin, X.2
Luo, H.3
Xu, X.4
Bolund, L.5
Zhang, X.6
Gan, S.Q.7
Li, N.8
-
123
-
-
69249215127
-
Conserved microRNAs and their targets in model grass species Brachypodium distachyon
-
Unver, T. and Budak, H. (2009) Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta, 230, 659-669.
-
(2009)
Planta
, vol.230
, pp. 659-669
-
-
Unver, T.1
Budak, H.2
-
124
-
-
84873548792
-
Identification of miRNA encoded by Jatropha curcas from EST and GSS
-
Vishwakarma, N.P. and Jadeja, V.J. (2013) Identification of miRNA encoded by Jatropha curcas from EST and GSS. Plant Signal Behav. 8, e23152.
-
(2013)
Plant Signal Behav.
, vol.8
, pp. e23152
-
-
Vishwakarma, N.P.1
Jadeja, V.J.2
-
125
-
-
84873519751
-
Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana
-
Wahl, V., Ponnu, J., Schlereth, A., Arrivault, S., Langenecker, T., Franke, A., Feil, R., Lunn, J.E., Stitt, M. and Schmid, M. (2013) Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana. Science, 339, 704-707.
-
(2013)
Science
, vol.339
, pp. 704-707
-
-
Wahl, V.1
Ponnu, J.2
Schlereth, A.3
Arrivault, S.4
Langenecker, T.5
Franke, A.6
Feil, R.7
Lunn, J.E.8
Stitt, M.9
Schmid, M.10
-
126
-
-
79957906653
-
Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens
-
Wan, P., Wu, J., Zhou, Y., Xiao, J., Feng, J., Zhao, W., Xiang, S., Jiang, G. and Chen, J.Y. (2011) Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens. Genom. Proteom. Bioinform. 9, 37-44.
-
(2011)
Genom. Proteom. Bioinform.
, vol.9
, pp. 37-44
-
-
Wan, P.1
Wu, J.2
Zhou, Y.3
Xiao, J.4
Feng, J.5
Zhao, W.6
Xiang, S.7
Jiang, G.8
Chen, J.Y.9
-
127
-
-
84907384889
-
Regulation of flowering time by the miR156-mediated age pathway
-
Wang, J.-W. (2014) Regulation of flowering time by the miR156-mediated age pathway. J. Exp. Bot. 65, 4723-4730.
-
(2014)
J. Exp. Bot.
, vol.65
, pp. 4723-4730
-
-
Wang, J.-W.1
-
128
-
-
27744596243
-
Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
-
Wang, J.W., Wang, L.J., Mao, Y.B., Cai, W.J., Xue, H.W. and Chen, X.Y. (2005) Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell, 17, 2204-2216.
-
(2005)
Plant Cell
, vol.17
, pp. 2204-2216
-
-
Wang, J.W.1
Wang, L.J.2
Mao, Y.B.3
Cai, W.J.4
Xue, H.W.5
Chen, X.Y.6
-
129
-
-
54949093292
-
Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana
-
Wang, J., Schwab, R., Czech, B., Mica, E. and Weigel, D. (2008) Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell, 20, 1231-1243.
-
(2008)
Plant Cell
, vol.20
, pp. 1231-1243
-
-
Wang, J.1
Schwab, R.2
Czech, B.3
Mica, E.4
Weigel, D.5
-
130
-
-
68749095252
-
miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana
-
Wang, J.W., Czech, B. and Weigel, D. (2009) miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell, 138, 738-749.
-
(2009)
Cell
, vol.138
, pp. 738-749
-
-
Wang, J.W.1
Czech, B.2
Weigel, D.3
-
131
-
-
84863237458
-
Isolation and identification of miRNAs in Jatropha curcas
-
Wang, C.M., Liu, P., Sun, F., Li, L., Liu, P., Ye, J. and Yue, G.H. (2012) Isolation and identification of miRNAs in Jatropha curcas. Int. J. Biol. Sci. 8, 418-429.
-
(2012)
Int. J. Biol. Sci.
, vol.8
, pp. 418-429
-
-
Wang, C.M.1
Liu, P.2
Sun, F.3
Li, L.4
Liu, P.5
Ye, J.6
Yue, G.H.7
-
132
-
-
70350029271
-
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
-
Wei, B., Cai, T., Zhang, R., Li, A., Huo, N., Li, S., Gu, Y.Q., Vogel, J., Jia, J., Qi, Y. and Mao, L. (2009) Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct. Integr. Genomics, 9, 499-511.
-
(2009)
Funct. Integr. Genomics
, vol.9
, pp. 499-511
-
-
Wei, B.1
Cai, T.2
Zhang, R.3
Li, A.4
Huo, N.5
Li, S.6
Gu, Y.Q.7
Vogel, J.8
Jia, J.9
Qi, Y.10
Mao, L.11
-
133
-
-
84870890277
-
Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network
-
Wei, S., Gruber, M.Y., Yu, B., Gao, M.J., Khachatourians, G.G., Hegedus, D.D., Parkin, I.A. and Hannoufa, A. (2012) Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network. BMC Plant Biol. 12, 169.
-
(2012)
BMC Plant Biol.
, vol.12
, pp. 169
-
-
Wei, S.1
Gruber, M.Y.2
Yu, B.3
Gao, M.J.4
Khachatourians, G.G.5
Hegedus, D.D.6
Parkin, I.A.7
Hannoufa, A.8
-
134
-
-
84898009385
-
Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon
-
Wei, B., Zhang, R.Z., Guo, J.J., Liu, D.M., Li, A.L., Fan, R.C., Mao, L. and Zhang, X.Q. (2014) Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon. PLoS ONE, 9, e84781.
-
(2014)
PLoS ONE
, vol.9
, pp. e84781
-
-
Wei, B.1
Zhang, R.Z.2
Guo, J.J.3
Liu, D.M.4
Li, A.L.5
Fan, R.C.6
Mao, L.7
Zhang, X.Q.8
-
135
-
-
84872797404
-
Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation
-
Williamson, V., Kim, A., Xie, B., McMichael, G.O., Gao, Y. and Vladimirov, V. (2013) Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation. Brief. Bioinform. 14, 36-45.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 36-45
-
-
Williamson, V.1
Kim, A.2
Xie, B.3
McMichael, G.O.4
Gao, Y.5
Vladimirov, V.6
-
136
-
-
33750373240
-
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3
-
Wu, G. and Poethig, R.S. (2006) Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development, 133, 3539-3547.
-
(2006)
Development
, vol.133
, pp. 3539-3547
-
-
Wu, G.1
Poethig, R.S.2
-
137
-
-
68749100821
-
The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
-
Wu, G., Park, M.Y., Conway, S.R., Wang, J.W., Weigel, D. and Poethig, R.S. (2009) The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell, 138, 750-759.
-
(2009)
Cell
, vol.138
, pp. 750-759
-
-
Wu, G.1
Park, M.Y.2
Conway, S.R.3
Wang, J.W.4
Weigel, D.5
Poethig, R.S.6
-
138
-
-
84891543934
-
Regulation of FLOWERING LOCUS T by a MicroRNA in Brachypodium distachyon
-
Wu, L., Liu, D.F., Wu, J.J., Zhang, R.Z., Qin, Z.R., Liu, D.M., Li, A.L., Fu, D.L., Zhai, W.X. and Mao, L. (2013) Regulation of FLOWERING LOCUS T by a MicroRNA in Brachypodium distachyon. Plant Cell, 25, 4363-4377.
-
(2013)
Plant Cell
, vol.25
, pp. 4363-4377
-
-
Wu, L.1
Liu, D.F.2
Wu, J.J.3
Zhang, R.Z.4
Qin, Z.R.5
Liu, D.M.6
Li, A.L.7
Fu, D.L.8
Zhai, W.X.9
Mao, L.10
-
139
-
-
84926320934
-
Research progress in digging and validation of miRNA target genes using experimental methods
-
Xiao, L., Xi, B., Hua, C., Wei, J., Xin, L., Li-li, T. and Yan-ming, Z. (2012) Research progress in digging and validation of miRNA target genes using experimental methods. J. NE. Ag. Univ. (E. E.) 19, 86-96.
-
(2012)
J. NE. Ag. Univ. (E. E.)
, vol.19
, pp. 86-96
-
-
Xiao, L.1
Xi, B.2
Hua, C.3
Wei, J.4
Xin, L.5
Li-li, T.6
Yan-ming, Z.7
-
140
-
-
77953683331
-
Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum)
-
Xie, F., Frazier, T.P. and Zhang, B. (2010) Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum). Planta, 232, 417-434.
-
(2010)
Planta
, vol.232
, pp. 417-434
-
-
Xie, F.1
Frazier, T.P.2
Zhang, B.3
-
141
-
-
84896399698
-
High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress
-
Xie, F., Stewart, C.N. Jr, Taki, F.A., He, Q., Liu, H. and Zhang, B. (2014) High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress. Plant Biotechnol. J. 12, 354-366.
-
(2014)
Plant Biotechnol. J.
, vol.12
, pp. 354-366
-
-
Xie, F.1
Stewart Jr, C.N.2
Taki, F.A.3
He, Q.4
Liu, H.5
Zhang, B.6
-
142
-
-
84926286805
-
Global microRNA modification in cotton (Gossypium hirsutum L.)
-
Xie, F.L., Wang, Q.L. and Zhang, B.H. (2015) Global microRNA modification in cotton (Gossypium hirsutum L.). Plant Biotechnol. J., In press. doi: 10.1111/pbi.12271.
-
(2015)
Plant Biotechnol. J.
-
-
Xie, F.L.1
Wang, Q.L.2
Zhang, B.H.3
-
143
-
-
79951570957
-
MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features
-
Xu, J., Li, C.-X., Li, Y.-S., Lv, J.-Y., Ma, Y., Shao, T.-T., Xu, L.-D., Wang, Y.-Y., Du, L., Zhang, Y.-P., Jiang, W., Li, C.-Q., Xiao, Y. and Li, X. (2011) MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features. Nucleic Acids Res. 39, 825-836.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 825-836
-
-
Xu, J.1
Li, C.-X.2
Li, Y.-S.3
Lv, J.-Y.4
Ma, Y.5
Shao, T.-T.6
Xu, L.-D.7
Wang, Y.-Y.8
Du, L.9
Zhang, Y.-P.10
Jiang, W.11
Li, C.-Q.12
Xiao, Y.13
Li, X.14
-
144
-
-
84891357101
-
Inferring the soybean (Glycine max) microRNA functional network based on target gene network
-
Xu, Y., Guo, M., Liu, X., Wang, C. and Liu, Y. (2014) Inferring the soybean (Glycine max) microRNA functional network based on target gene network. Bioinformatics, 30, 94-103.
-
(2014)
Bioinformatics
, vol.30
, pp. 94-103
-
-
Xu, Y.1
Guo, M.2
Liu, X.3
Wang, C.4
Liu, Y.5
-
145
-
-
79551545369
-
Overexpression of an B-box protein gene reduces abiotic stress tolerance and promotes root growth in rice
-
Yan, Y., Chen, X., Yang, K., Sun, Z., Fu, Y., Zhang, Y. and Fang, R. (2011) Overexpression of an B-box protein gene reduces abiotic stress tolerance and promotes root growth in rice. Mol. Plant. 4, 190-197.
-
(2011)
Mol. Plant.
, vol.4
, pp. 190-197
-
-
Yan, Y.1
Chen, X.2
Yang, K.3
Sun, Z.4
Fu, Y.5
Zhang, Y.6
Fang, R.7
-
146
-
-
55849106319
-
Pretreatment: the key to unlocking low-cost cellulosic ethanol
-
Yang, B. and Wyman, C.E. (2008) Pretreatment: the key to unlocking low-cost cellulosic ethanol. Biofuels Bioprod. Biorefin. 2, 26-40.
-
(2008)
Biofuels Bioprod. Biorefin.
, vol.2
, pp. 26-40
-
-
Yang, B.1
Wyman, C.E.2
-
147
-
-
78751532092
-
Vegetative phase change is mediated by a leaf-derived signal that represses the transcription of miR156
-
Yang, L., Conway, S.R. and Poethig, R.S. (2011) Vegetative phase change is mediated by a leaf-derived signal that represses the transcription of miR156. Development, 138, 245-249.
-
(2011)
Development
, vol.138
, pp. 245-249
-
-
Yang, L.1
Conway, S.R.2
Poethig, R.S.3
-
148
-
-
84879062749
-
Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C
-
Yang, L., Xu, M., Koo, Y., He, J. and Poethig, R.S. (2013) Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C. eLife, 2, e00260.
-
(2013)
eLife
, vol.2
, pp. e00260
-
-
Yang, L.1
Xu, M.2
Koo, Y.3
He, J.4
Poethig, R.S.5
-
149
-
-
84907308741
-
TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis
-
Yang, Z.B., Geng, X., He, C., Zhang, F., Wang, R., Horst, W.J. and Ding, Z. (2014) TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. Plant Cell, 26, 2889-2904.
-
(2014)
Plant Cell
, vol.26
, pp. 2889-2904
-
-
Yang, Z.B.1
Geng, X.2
He, C.3
Zhang, F.4
Wang, R.5
Horst, W.J.6
Ding, Z.7
-
150
-
-
84879053690
-
Sugar is an endogenous cue for juvenile-to-adult phase transition in plants
-
Yu, S., Cao, L., Zhou, C.-M., Zhang, T.-Q., Lian, H., Sun, Y., Wu, J., Huang, J., Wang, G. and Wang, J.-W. (2013) Sugar is an endogenous cue for juvenile-to-adult phase transition in plants. eLife, 2, e00269.
-
(2013)
eLife
, vol.2
, pp. e00269
-
-
Yu, S.1
Cao, L.2
Zhou, C.-M.3
Zhang, T.-Q.4
Lian, H.5
Sun, Y.6
Wu, J.7
Huang, J.8
Wang, G.9
Wang, J.-W.10
-
151
-
-
48149090892
-
Plants to power: bioenergy to fuel the future
-
Yuan, J.S., Tiller, K.H., Al-Ahmad, H., Stewart, N.R. and Stewart, C.N. Jr. (2008) Plants to power: bioenergy to fuel the future. Trends Plant Sci. 13, 421-429.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 421-429
-
-
Yuan, J.S.1
Tiller, K.H.2
Al-Ahmad, H.3
Stewart, N.R.4
Stewart Jr, C.N.5
-
152
-
-
84879484741
-
Status of molecular breeding for improving Jatropha curcas and biodiesel
-
Yue, G.H., Sun, F. and Liu, P. (2013) Status of molecular breeding for improving Jatropha curcas and biodiesel. Renewable Sustainable Energy Rev. 26, 332-343.
-
(2013)
Renewable Sustainable Energy Rev.
, vol.26
, pp. 332-343
-
-
Yue, G.H.1
Sun, F.2
Liu, P.3
-
153
-
-
78549291421
-
Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
-
Zanca, A.S., Vicentini, R., Ortiz-Morea, F.A., Del Bem, L.E., da Silva, M.J., Vincentz, M. and Nogueira, F.T. (2010) Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane. BMC Plant Biol. 10, 260.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 260
-
-
Zanca, A.S.1
Vicentini, R.2
Ortiz-Morea, F.A.3
Del Bem, L.E.4
da Silva, M.J.5
Vincentz, M.6
Nogueira, F.T.7
-
154
-
-
77950360655
-
Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
-
Zeng, C., Wang, W., Zheng, Y., Chen, X., Bo, W., Song, S., Zhang, W. and Peng, M. (2010) Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants. Nucleic Acids Res. 38, 981-995.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 981-995
-
-
Zeng, C.1
Wang, W.2
Zheng, Y.3
Chen, X.4
Bo, W.5
Song, S.6
Zhang, W.7
Peng, M.8
-
155
-
-
84890877713
-
Role of microRNAs in plant responses to nutrient stress
-
Zeng, H., Wang, G., Hu, X., Wang, H., Du, L. and Zhu, Y. (2014a) Role of microRNAs in plant responses to nutrient stress. Plant Soil, 374, 1005-1021.
-
(2014)
Plant Soil
, vol.374
, pp. 1005-1021
-
-
Zeng, H.1
Wang, G.2
Hu, X.3
Wang, H.4
Du, L.5
Zhu, Y.6
-
156
-
-
84886302670
-
Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels
-
Zeng, Y., Zhao, S., Yang, S. and Ding, S.-Y. (2014b) Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels. Curr. Opin. Biotech. 27, 38-45.
-
(2014)
Curr. Opin. Biotech.
, vol.27
, pp. 38-45
-
-
Zeng, Y.1
Zhao, S.2
Yang, S.3
Ding, S.-Y.4
-
157
-
-
84910073298
-
MicroRNA-based biotechnology for plant improvement
-
Zhang, B. and Wang, Q. (2015) MicroRNA-based biotechnology for plant improvement. J. Cell. Physiol. 230, 1, 1-15. In Press.
-
(2015)
J. Cell. Physiol.
, vol.230
, Issue.1
, pp. 1-15
-
-
Zhang, B.1
Wang, Q.2
-
158
-
-
29144527030
-
Plant microRNA: a small regulatory molecule with big impact
-
Zhang, B.H., Pan, X.P., Cobb, G.P. and Anderson, T.A. (2006) Plant microRNA: a small regulatory molecule with big impact. Dev. Biol. 289, 3-16.
-
(2006)
Dev. Biol.
, vol.289
, pp. 3-16
-
-
Zhang, B.H.1
Pan, X.P.2
Cobb, G.P.3
Anderson, T.A.4
-
159
-
-
70350438585
-
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
-
Zhang, J., Xu, Y., Huan, Q. and Chong, K. (2009) Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genom. 10, 449.
-
(2009)
BMC Genom.
, vol.10
, pp. 449
-
-
Zhang, J.1
Xu, Y.2
Huan, Q.3
Chong, K.4
-
160
-
-
81955164851
-
Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
-
Zhang, L., Zheng, Y., Jagadeeswaran, G., Li, Y., Gowdu, K. and Sunkar, R. (2011) Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum. Genomics, 98, 460-468.
-
(2011)
Genomics
, vol.98
, pp. 460-468
-
-
Zhang, L.1
Zheng, Y.2
Jagadeeswaran, G.3
Li, Y.4
Gowdu, K.5
Sunkar, R.6
-
161
-
-
84880880764
-
Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize
-
Zhao, Y., Xu, Z., Mo, Q., Zou, C., Li, W., Xu, Y. and Xie, C. (2013) Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize. Ann. Bot. 112, 633-642.
-
(2013)
Ann. Bot.
, vol.112
, pp. 633-642
-
-
Zhao, Y.1
Xu, Z.2
Mo, Q.3
Zou, C.4
Li, W.5
Xu, Y.6
Xie, C.7
-
162
-
-
84883214673
-
MicroRNA-mediated gene regulation: potential applications for plant genetic engineering
-
Zhou, M. and Luo, H. (2013) MicroRNA-mediated gene regulation: potential applications for plant genetic engineering. Plant Mol. Biol. 83, 59-75.
-
(2013)
Plant Mol. Biol.
, vol.83
, pp. 59-75
-
-
Zhou, M.1
Luo, H.2
-
163
-
-
84878155989
-
Regulation of flowering time by microRNAs
-
Zhou, C.M. and Wang, J.W. (2013) Regulation of flowering time by microRNAs. J. Genet. Genomics, 40, 211-215.
-
(2013)
J. Genet. Genomics
, vol.40
, pp. 211-215
-
-
Zhou, C.M.1
Wang, J.W.2
-
164
-
-
79953857473
-
Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
-
Zhu, H., Hu, F., Wang, R., Zhou, X., Sze, S.-H., Liou Lisa, W., Barefoot, A., Dickman, M. and Zhang, X. (2011a) Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell, 145, 242-256.
-
(2011)
Cell
, vol.145
, pp. 242-256
-
-
Zhu, H.1
Hu, F.2
Wang, R.3
Zhou, X.4
Sze, S.-H.5
Liou Lisa, W.6
Barefoot, A.7
Dickman, M.8
Zhang, X.9
-
165
-
-
84855869914
-
Discovering numerical laws of plant microRNA by evolution
-
Zhu, R., Li, X. and Chen, Q. (2011b) Discovering numerical laws of plant microRNA by evolution. Biochem. Biophys. Res. Commun. 415, 313-318.
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.415
, pp. 313-318
-
-
Zhu, R.1
Li, X.2
Chen, Q.3
-
166
-
-
43549110697
-
Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa
-
Zhuang, J., Cai, B., Peng, R.H., Zhu, B., Jin, X.F., Xue, Y., Gao, F., Fu, X.Y., Tian, Y.S., Zhao, W., Qiao, Y.S., Zhang, Z., Xiong, A.S. and Yao, Q.H. (2008) Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa. Biochem. Biophys. Res. Commun. 371, 468-474.
-
(2008)
Biochem. Biophys. Res. Commun.
, vol.371
, pp. 468-474
-
-
Zhuang, J.1
Cai, B.2
Peng, R.H.3
Zhu, B.4
Jin, X.F.5
Xue, Y.6
Gao, F.7
Fu, X.Y.8
Tian, Y.S.9
Zhao, W.10
Qiao, Y.S.11
Zhang, Z.12
Xiong, A.S.13
Yao, Q.H.14
-
167
-
-
84892466713
-
miRClassify: An advanced web server for miRNA family classification and annotation
-
Zou, Q., Mao, Y., Hu, L., Wu, Y. and Ji, Z. (2014) miRClassify: An advanced web server for miRNA family classification and annotation. Comput. Biol. Med. 45, 157-160.
-
(2014)
Comput. Biol. Med.
, vol.45
, pp. 157-160
-
-
Zou, Q.1
Mao, Y.2
Hu, L.3
Wu, Y.4
Ji, Z.5
|