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Volumn 13, Issue 3, 2015, Pages 337-354

Manipulating microRNAs for improved biomass and biofuels from plant feedstocks

Author keywords

Characterization; Development; Expression; Gene; Recalcitrance; Stress

Indexed keywords

PANICUM VIRGATUM;

EID: 84926317820     PISSN: 14677644     EISSN: 14677652     Source Type: Journal    
DOI: 10.1111/pbi.12319     Document Type: Review
Times cited : (40)

References (167)
  • 3
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
    • Aukerman, M.J. and Sakai, H. (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell, 15, 2730-2741.
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 4
    • 79955524820 scopus 로고    scopus 로고
    • Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    • Baev, V., Milev, I., Naydenov, M., Apostolova, E., Minkov, G., Minkov, I. and Yahubyan, G. (2011) Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs. Genomics, 97, 282-293.
    • (2011) Genomics , vol.97 , pp. 282-293
    • Baev, V.1    Milev, I.2    Naydenov, M.3    Apostolova, E.4    Minkov, G.5    Minkov, I.6    Yahubyan, G.7
  • 7
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel, D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 8
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel, D.P. (2009) MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 9
    • 84455175504 scopus 로고    scopus 로고
    • The effect of uncertainty on US transport-related GHG emissions and fuel consumption out to 2050
    • Bastani, P., Heywood, J.B. and Hope, C. (2012) The effect of uncertainty on US transport-related GHG emissions and fuel consumption out to 2050. Transportation Res. A-Pol. 46, 517-548.
    • (2012) Transportation Res. A-Pol. , vol.46 , pp. 517-548
    • Bastani, P.1    Heywood, J.B.2    Hope, C.3
  • 10
    • 84893419524 scopus 로고    scopus 로고
    • Effects of altered lignin biosynthesis on phenylpropanoid metabolism and plant stress
    • Baxter, H.L. and Stewart, C.N. Jr. (2013) Effects of altered lignin biosynthesis on phenylpropanoid metabolism and plant stress. Biofuels, 4, 635-650.
    • (2013) Biofuels , vol.4 , pp. 635-650
    • Baxter, H.L.1    Stewart Jr, C.N.2
  • 11
    • 84875630642 scopus 로고    scopus 로고
    • Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    • Bertolini, E., Verelst, W., Horner, D.S., Gianfranceschi, L., Piccolo, V., Inze, D., Pe, M.E. and Mica, E. (2013) Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. Mol. Plant. 6, 423-443.
    • (2013) Mol. Plant. , vol.6 , pp. 423-443
    • Bertolini, E.1    Verelst, W.2    Horner, D.S.3    Gianfranceschi, L.4    Piccolo, V.5    Inze, D.6    Pe, M.E.7    Mica, E.8
  • 12
    • 84873119880 scopus 로고    scopus 로고
    • Improved lignocellulose conversion to biofuels with thermophilic bacteria and thermostable enzymes
    • Bhalla, A., Bansal, N., Kumar, S., Bischoff, K.M. and Sani, R.K. (2013) Improved lignocellulose conversion to biofuels with thermophilic bacteria and thermostable enzymes. Bioresour. Technol. 128, 751-759.
    • (2013) Bioresour. Technol. , vol.128 , pp. 751-759
    • Bhalla, A.1    Bansal, N.2    Kumar, S.3    Bischoff, K.M.4    Sani, R.K.5
  • 13
    • 78649317688 scopus 로고    scopus 로고
    • Agricultural crop-based biofuels - resource efficiency and environmental performance including direct land use changes
    • Börjesson, P. and Tufvesson, L.M. (2011) Agricultural crop-based biofuels - resource efficiency and environmental performance including direct land use changes. J. Cleaner Prod. 19, 108-120.
    • (2011) J. Cleaner Prod. , vol.19 , pp. 108-120
    • Börjesson, P.1    Tufvesson, L.M.2
  • 14
    • 84861987572 scopus 로고    scopus 로고
    • Sweet sorghum as a model system for bioenergy crops
    • Calvino, M. and Messing, J. (2012) Sweet sorghum as a model system for bioenergy crops. Curr. Opin. Biotech. 23, 323-329.
    • (2012) Curr. Opin. Biotech. , vol.23 , pp. 323-329
    • Calvino, M.1    Messing, J.2
  • 15
    • 79960017191 scopus 로고    scopus 로고
    • Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
    • Calvino, M., Bruggmann, R. and Messing, J. (2011) Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems. BMC Genom. 12, 356.
    • (2011) BMC Genom. , vol.12 , pp. 356
    • Calvino, M.1    Bruggmann, R.2    Messing, J.3
  • 16
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • Chen, X.M. (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 303, 2022-2025.
    • (2004) Science , vol.303 , pp. 2022-2025
    • Chen, X.M.1
  • 17
    • 34047174556 scopus 로고    scopus 로고
    • The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
    • Chuck, G., Cigan, A.M., Saeteurn, K. and Hake, S. (2007) The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA. Nat. Genet. 39, 544-549.
    • (2007) Nat. Genet. , vol.39 , pp. 544-549
    • Chuck, G.1    Cigan, A.M.2    Saeteurn, K.3    Hake, S.4
  • 20
    • 77950962979 scopus 로고    scopus 로고
    • Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs
    • Covarrubias, A.A. and Reyes, J.L. (2010) Post-transcriptional gene regulation of salinity and drought responses by plant microRNAs. Plant Cell Environ. 33, 481-489.
    • (2010) Plant Cell Environ. , vol.33 , pp. 481-489
    • Covarrubias, A.A.1    Reyes, J.L.2
  • 21
    • 79953086307 scopus 로고    scopus 로고
    • Evolution and functional diversification of MIRNA genes
    • Cuperus, J.T., Fahlgren, N. and Carrington, J.C. (2011) Evolution and functional diversification of MIRNA genes. Plant Cell, 23, 431-442.
    • (2011) Plant Cell , vol.23 , pp. 431-442
    • Cuperus, J.T.1    Fahlgren, N.2    Carrington, J.C.3
  • 22
    • 84893723345 scopus 로고    scopus 로고
    • Library preparation methods for next-generation sequencing: tone down the bias
    • van Dijk, E.L., Jaszczyszyn, Y. and Thermes, C. (2014) Library preparation methods for next-generation sequencing: tone down the bias. Exp. Cell Res. 322, 12-20.
    • (2014) Exp. Cell Res. , vol.322 , pp. 12-20
    • van Dijk, E.L.1    Jaszczyszyn, Y.2    Thermes, C.3
  • 23
    • 84895867913 scopus 로고    scopus 로고
    • Molecular strategies for addressing gene flow problems and their potential applications in abiotic stress tolerant transgenic plants
    • Ding, J., Duan, H., Deng, Z., Zhao, D., Ganjun, Y., McAvoy, R. and Li, Y. (2014) Molecular strategies for addressing gene flow problems and their potential applications in abiotic stress tolerant transgenic plants. Crit. Rev. Plant Sci. 33, 190-204.
    • (2014) Crit. Rev. Plant Sci. , vol.33 , pp. 190-204
    • Ding, J.1    Duan, H.2    Deng, Z.3    Zhao, D.4    Ganjun, Y.5    McAvoy, R.6    Li, Y.7
  • 25
    • 84883239272 scopus 로고    scopus 로고
    • Dynamic analysis of Arabidopsis AP2 σ subunit reveals a key role in clathrin-mediated endocytosis and plant development
    • Fan, L., Hao, H., Xue, Y., Zhang, L., Song, K., Ding, Z., Botella, M.A., Wang, H. and Lin, J. (2013) Dynamic analysis of Arabidopsis AP2 σ subunit reveals a key role in clathrin-mediated endocytosis and plant development. Development, 140, 3826-3837.
    • (2013) Development , vol.140 , pp. 3826-3837
    • Fan, L.1    Hao, H.2    Xue, Y.3    Zhang, L.4    Song, K.5    Ding, Z.6    Botella, M.A.7    Wang, H.8    Lin, J.9
  • 26
    • 84867422730 scopus 로고    scopus 로고
    • microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.)
    • Ferreira, T.H., Gentile, A., Vilela, R.D., Costa, G.G., Dias, L.I., Endres, L. and Menossi, M. (2012) microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.). PLoS ONE, 7, e46703.
    • (2012) PLoS ONE , vol.7 , pp. e46703
    • Ferreira, T.H.1    Gentile, A.2    Vilela, R.D.3    Costa, G.G.4    Dias, L.I.5    Endres, L.6    Menossi, M.7
  • 27
    • 84871824918 scopus 로고    scopus 로고
    • Evolution of the ARF gene family in land plants: old domains, new tricks
    • Finet, C., Berne-Dedieu, A., Scutt, C.P. and Marlétaz, F. (2013) Evolution of the ARF gene family in land plants: old domains, new tricks. Mol. Biol. Evol. 30, 45-56.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 45-56
    • Finet, C.1    Berne-Dedieu, A.2    Scutt, C.P.3    Marlétaz, F.4
  • 28
    • 40449132719 scopus 로고    scopus 로고
    • Biofuels and implications for agricultural water use: blue impacts of green energy
    • de Fraiture, C., Giordano, M. and Liao, Y. (2008) Biofuels and implications for agricultural water use: blue impacts of green energy. Water Policy, 10, 67-81.
    • (2008) Water Policy , vol.10 , pp. 67-81
    • de Fraiture, C.1    Giordano, M.2    Liao, Y.3
  • 29
    • 84862800354 scopus 로고    scopus 로고
    • Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production
    • Fu, C., Sunkar, R., Zhou, C., Shen, H., Zhang, J.-Y., Matts, J., Wolf, J., Mann, D.G.J., Stewart, C.N., Tang, Y. and Wang, Z.-Y. (2012) Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnol. J. 10, 4, 443-452.
    • (2012) Plant Biotechnol. J. , vol.10 , Issue.4 , pp. 443-452
    • Fu, C.1    Sunkar, R.2    Zhou, C.3    Shen, H.4    Zhang, J.-Y.5    Matts, J.6    Wolf, J.7    Mann, D.G.J.8    Stewart, C.N.9    Tang, Y.10    Wang, Z.-Y.11
  • 31
    • 33846904347 scopus 로고    scopus 로고
    • The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings
    • Gandikota, M., Birkenbihl, R.P., Höhmann, S., Cardon, G.H., Saedler, H. and Huijser, P. (2007) The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings. Plant J. 49, 683-693.
    • (2007) Plant J. , vol.49 , pp. 683-693
    • Gandikota, M.1    Birkenbihl, R.P.2    Höhmann, S.3    Cardon, G.H.4    Saedler, H.5    Huijser, P.6
  • 32
    • 84926328925 scopus 로고    scopus 로고
    • Genetic engineering of crop plants for abiotic stress tolerance
    • (Ahmad, P. and Rasool, S., eds) -. San Diego: Academic Press.
    • Goel, S. and Madan, B. (2014) Genetic engineering of crop plants for abiotic stress tolerance. In Emerging Technologies and Management of Crop Stress Tolerance (Ahmad, P. and Rasool, S., eds), pp. 99-123. San Diego: Academic Press.
    • (2014) Emerging Technologies and Management of Crop Stress Tolerance , pp. 99-123
    • Goel, S.1    Madan, B.2
  • 33
    • 78049311698 scopus 로고    scopus 로고
    • Gene flow of transgenic seed-expressed traits: biosafety considerations
    • Gressel, J. (2010) Gene flow of transgenic seed-expressed traits: biosafety considerations. Plant Sci. 179, 630-634.
    • (2010) Plant Sci. , vol.179 , pp. 630-634
    • Gressel, J.1
  • 35
    • 84868193851 scopus 로고    scopus 로고
    • miRNA-miRNA interaction implicates for potential mutual regulatory pattern
    • Guo, L., Sun, B., Wu, Q., Yang, S. and Chen, F. (2012) miRNA-miRNA interaction implicates for potential mutual regulatory pattern. Gene, 511, 187-194.
    • (2012) Gene , vol.511 , pp. 187-194
    • Guo, L.1    Sun, B.2    Wu, Q.3    Yang, S.4    Chen, F.5
  • 36
    • 72049120376 scopus 로고    scopus 로고
    • Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance
    • Gutierrez, L., Bussell, J.D., Pacurar, D.I., Schwambach, J., Pacurar, M. and Bellini, C. (2009) Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell, 21, 3119-3132.
    • (2009) Plant Cell , vol.21 , pp. 3119-3132
    • Gutierrez, L.1    Bussell, J.D.2    Pacurar, D.I.3    Schwambach, J.4    Pacurar, M.5    Bellini, C.6
  • 37
    • 77955101812 scopus 로고    scopus 로고
    • Computational methods to identify miRNA targets
    • Hammell, M. (2010) Computational methods to identify miRNA targets. Semin. Cell Dev. Biol. 21, 738-744.
    • (2010) Semin. Cell Dev. Biol. , vol.21 , pp. 738-744
    • Hammell, M.1
  • 38
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: small RNAs with a big role in gene regulation
    • He, L. and Hannon, G.J. (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet. 5, 522-531.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 39
    • 34547666808 scopus 로고    scopus 로고
    • The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches
    • Hirel, B., Le Gouis, J., Ney, B. and Gallais, A. (2007) The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches. J. Exp. Bot. 58, 2369-2387.
    • (2007) J. Exp. Bot. , vol.58 , pp. 2369-2387
    • Hirel, B.1    Le Gouis, J.2    Ney, B.3    Gallais, A.4
  • 40
    • 84856580517 scopus 로고    scopus 로고
    • Organ size regulation in plants: insights from compensation
    • Horiguchi, G. and Tsukaya, H. (2011) Organ size regulation in plants: insights from compensation. Front. Plant Sci. 2, 24.
    • (2011) Front. Plant Sci. , vol.2 , pp. 24
    • Horiguchi, G.1    Tsukaya, H.2
  • 41
    • 80052443858 scopus 로고    scopus 로고
    • The control of developmental phase transitions in plants
    • Huijser, P. and Schmid, M. (2011) The control of developmental phase transitions in plants. Development, 138, 4117-4129.
    • (2011) Development , vol.138 , pp. 4117-4129
    • Huijser, P.1    Schmid, M.2
  • 42
    • 84869998333 scopus 로고    scopus 로고
    • Methods for validation of miRNA sequence variants and the cleavage of their targets
    • Jeong, D.-H. and Green, P.J. (2012) Methods for validation of miRNA sequence variants and the cleavage of their targets. Methods, 58, 135-143.
    • (2012) Methods , vol.58 , pp. 135-143
    • Jeong, D.-H.1    Green, P.J.2
  • 44
    • 84879704714 scopus 로고    scopus 로고
    • Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage
    • Jeong, D.H., Thatcher, S.R., Brown, R.S., Zhai, J., Park, S., Rymarquis, L.A., Meyers, B.C. and Green, P.J. (2013b) Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. Plant Physiol. 162, 1225-1245.
    • (2013) Plant Physiol. , vol.162 , pp. 1225-1245
    • Jeong, D.H.1    Thatcher, S.R.2    Brown, R.S.3    Zhai, J.4    Park, S.5    Rymarquis, L.A.6    Meyers, B.C.7    Green, P.J.8
  • 46
    • 84876799230 scopus 로고    scopus 로고
    • MicroRNAs and their cross-talks in plant development
    • Jin, D., Wang, Y., Zhao, Y. and Shen, M. (2013) MicroRNAs and their cross-talks in plant development. J. Genet. Genomics, 40, 161-170.
    • (2013) J. Genet. Genomics , vol.40 , pp. 161-170
    • Jin, D.1    Wang, Y.2    Zhao, Y.3    Shen, M.4
  • 48
    • 84890447855 scopus 로고    scopus 로고
    • Pleiotropic constraints, expression level, and the evolution of miRNA sequences
    • Jovelin, R. (2013) Pleiotropic constraints, expression level, and the evolution of miRNA sequences. J. Mol. Evol. 77, 206-220.
    • (2013) J. Mol. Evol. , vol.77 , pp. 206-220
    • Jovelin, R.1
  • 49
    • 84864949461 scopus 로고    scopus 로고
    • Designing the perfect plant feedstock for biofuel production: using the whole buffalo to diversify fuels and products
    • Joyce, B.L. and Stewart, C.N. Jr. (2012) Designing the perfect plant feedstock for biofuel production: using the whole buffalo to diversify fuels and products. Biotechnol. Adv. 30, 1011-1022.
    • (2012) Biotechnol. Adv. , vol.30 , pp. 1011-1022
    • Joyce, B.L.1    Stewart Jr, C.N.2
  • 50
    • 84856658756 scopus 로고    scopus 로고
    • Modifying crops to increase cell wall digestibility
    • Jung, H.J., Samac, D.A. and Sarath, G. (2012) Modifying crops to increase cell wall digestibility. Plant Sci. 185-186, 65-77.
    • (2012) Plant Sci. , vol.185-186 , pp. 65-77
    • Jung, H.J.1    Samac, D.A.2    Sarath, G.3
  • 51
    • 84867205057 scopus 로고    scopus 로고
    • Characterization of microRNAs expression during maize seed development
    • Kang, M., Zhao, Q., Zhu, D. and Yu, J. (2012) Characterization of microRNAs expression during maize seed development. BMC Genom. 13, 360.
    • (2012) BMC Genom. , vol.13 , pp. 360
    • Kang, M.1    Zhao, Q.2    Zhu, D.3    Yu, J.4
  • 54
    • 84856594225 scopus 로고    scopus 로고
    • Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants
    • Khraiwesh, B., Zhu, J.K. and Zhu, J. (2012) Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochem. Biophys. Acta. 1819, 137-148.
    • (2012) Biochem. Biophys. Acta. , vol.1819 , pp. 137-148
    • Khraiwesh, B.1    Zhu, J.K.2    Zhu, J.3
  • 56
    • 60749101298 scopus 로고    scopus 로고
    • Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis
    • Kim, J.H., Woo, H.R., Kim, J., Lim, P.O., Lee, I.C., Choi, S.H., Hwang, D. and Nam, H.G. (2009) Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in Arabidopsis. Science, 323, 1053-1057.
    • (2009) Science , vol.323 , pp. 1053-1057
    • Kim, J.H.1    Woo, H.R.2    Kim, J.3    Lim, P.O.4    Lee, I.C.5    Choi, S.H.6    Hwang, D.7    Nam, H.G.8
  • 58
    • 84905026636 scopus 로고    scopus 로고
    • Gene regulatory cascade of senescence-associated NAC transcription factors activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in Arabidopsis
    • Kim, H.J., Hong, S.H., Kim, Y.W., Lee, I.H., Jun, J.H., Phee, B.-K., Rupak, T., Jeong, H., Lee, Y., Hong, B.S., Nam, H.G., Woo, H.R. and Lim, P.O. (2014) Gene regulatory cascade of senescence-associated NAC transcription factors activated by ETHYLENE-INSENSITIVE2-mediated leaf senescence signalling in Arabidopsis. J. Exp. Bot. 65, 4023-4036.
    • (2014) J. Exp. Bot. , vol.65 , pp. 4023-4036
    • Kim, H.J.1    Hong, S.H.2    Kim, Y.W.3    Lee, I.H.4    Jun, J.H.5    Phee, B.-K.6    Rupak, T.7    Jeong, H.8    Lee, Y.9    Hong, B.S.10    Nam, H.G.11    Woo, H.R.12    Lim, P.O.13
  • 60
    • 65249115211 scopus 로고    scopus 로고
    • Methods for pretreatment of lignocellulosic biomass for efficient hydrolysis and biofuel production
    • Kumar, P., Barrett, D.M., Delwiche, M.J. and Stroeve, P. (2009) Methods for pretreatment of lignocellulosic biomass for efficient hydrolysis and biofuel production. Ind. Eng. Chem. Res. 48, 3713-3729.
    • (2009) Ind. Eng. Chem. Res. , vol.48 , pp. 3713-3729
    • Kumar, P.1    Barrett, D.M.2    Delwiche, M.J.3    Stroeve, P.4
  • 61
    • 79956109505 scopus 로고    scopus 로고
    • Transgene introgression in crop relatives: molecular evidence and mitigation strategies
    • Kwit, C., Moon, H.S., Warwick, S.I. and Stewart, C.N. Jr. (2011) Transgene introgression in crop relatives: molecular evidence and mitigation strategies. Trends Biotechnol. 29, 284-293.
    • (2011) Trends Biotechnol. , vol.29 , pp. 284-293
    • Kwit, C.1    Moon, H.S.2    Warwick, S.I.3    Stewart Jr, C.N.4
  • 62
    • 84877359314 scopus 로고    scopus 로고
    • Energy and greenhouse gas balances of cassava-based ethanol
    • Le, L.T., van Ierland, E.C., Zhu, X. and Wesseler, J. (2013) Energy and greenhouse gas balances of cassava-based ethanol. Biomass Bioenergy, 51, 125-135.
    • (2013) Biomass Bioenergy , vol.51 , pp. 125-135
    • Le, L.T.1    van Ierland, E.C.2    Zhu, X.3    Wesseler, J.4
  • 63
    • 77349099230 scopus 로고    scopus 로고
    • Characterization and expression analysis of the Arabidopsis mir169 family
    • Li, Y., Fu, Y., Ji, L., Wu, C. and Zheng, C. (2010) Characterization and expression analysis of the Arabidopsis mir169 family. Plant Sci. 178, 271-280.
    • (2010) Plant Sci. , vol.178 , pp. 271-280
    • Li, Y.1    Fu, Y.2    Ji, L.3    Wu, C.4    Zheng, C.5
  • 64
    • 84886580228 scopus 로고    scopus 로고
    • ETHYLENE-INSENSITIVE3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis
    • Li, Z., Peng, J., Wen, X. and Guo, H. (2013) ETHYLENE-INSENSITIVE3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis. Plant Cell, 25, 3311-3328.
    • (2013) Plant Cell , vol.25 , pp. 3311-3328
    • Li, Z.1    Peng, J.2    Wen, X.3    Guo, H.4
  • 65
    • 84931829296 scopus 로고    scopus 로고
    • MYB transcription factors, active players in abiotic stress signaling
    • In Press.
    • Li, C., Ng, C.K.Y. and Fan, L.-M. (2014) MYB transcription factors, active players in abiotic stress signaling. Environ. Exp. Bot. In Press. DOI: doi: 10.1016/j.envexpbot.2014.06.014
    • (2014) Environ. Exp. Bot.
    • Li, C.1    Ng, C.K.Y.2    Fan, L.-M.3
  • 66
    • 84882695325 scopus 로고    scopus 로고
    • Dissecting and engineering metabolic and regulatory networks of thermophilic bacteria for biofuel production
    • Lin, L. and Xu, J. (2013) Dissecting and engineering metabolic and regulatory networks of thermophilic bacteria for biofuel production. Biotechnol. Adv. 31, 827-837.
    • (2013) Biotechnol. Adv. , vol.31 , pp. 827-837
    • Lin, L.1    Xu, J.2
  • 68
    • 77954289996 scopus 로고    scopus 로고
    • Identification and application of a rice senescence-associated promoter
    • Liu, L., Zhou, Y., Szczerba, M.W., Li, X. and Lin, Y. (2010) Identification and application of a rice senescence-associated promoter. Plant Phys. 153, 1239-1249.
    • (2010) Plant Phys. , vol.153 , pp. 1239-1249
    • Liu, L.1    Zhou, Y.2    Szczerba, M.W.3    Li, X.4    Lin, Y.5
  • 69
    • 84886092842 scopus 로고    scopus 로고
    • Advanced genetic tools for plant biotechnology
    • Liu, W., Yuan, J.S. and Stewart, C.N., Jr. (2013a) Advanced genetic tools for plant biotechnology. Nat. Rev. Genet. 14, 781-793.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 781-793
    • Liu, W.1    Yuan, J.S.2    Stewart, C.N.3
  • 70
    • 84881016308 scopus 로고    scopus 로고
    • Consequences of gene flow between oilseed rape (Brassica napus) and its relatives
    • Liu, Y., Wei, W., Ma, K., Li, J., Liang, Y. and Darmency, H. (2013b) Consequences of gene flow between oilseed rape (Brassica napus) and its relatives. Plant Sci. 211, 42-51.
    • (2013) Plant Sci. , vol.211 , pp. 42-51
    • Liu, Y.1    Wei, W.2    Ma, K.3    Li, J.4    Liang, Y.5    Darmency, H.6
  • 71
    • 84893697668 scopus 로고    scopus 로고
    • Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis
    • Liu, Z., Kong, L., Zhang, M., Lv, Y., Liu, Y., Zou, M., Lu, G., Cao, J. and Yu, X. (2013c) Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis. PLoS ONE, 8, e83444.
    • (2013) PLoS ONE , vol.8 , pp. e83444
    • Liu, Z.1    Kong, L.2    Zhang, M.3    Lv, Y.4    Liu, Y.5    Zou, M.6    Lu, G.7    Cao, J.8    Yu, X.9
  • 72
    • 84896315814 scopus 로고    scopus 로고
    • Microbial pretreatment of corn stovers by solid-state cultivation of Phanerochaete chrysosporium for biogas production
    • Liu, S., Wu, S., Pang, C., Li, W. and Dong, R. (2014a) Microbial pretreatment of corn stovers by solid-state cultivation of Phanerochaete chrysosporium for biogas production. Appl. Biochem. Biotechnol. 172, 1365-1376.
    • (2014) Appl. Biochem. Biotechnol. , vol.172 , pp. 1365-1376
    • Liu, S.1    Wu, S.2    Pang, C.3    Li, W.4    Dong, R.5
  • 73
    • 84925969416 scopus 로고    scopus 로고
    • Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters
    • Liu, W., Mazarei, M., Peng, Y., Fethe, M.H., Rudis, M.R., Lin, J., Millwood, R.J., Arelli, P.R. and Stewart, C.N., Jr. (2014b) Computational discovery of soybean promoter cis-regulatory elements for the construction of soybean cyst nematode-inducible synthetic promoters. Plant Biotechnol. J. 12, 8 1015-1026.
    • (2014) Plant Biotechnol. J. , vol.12 , Issue.8 , pp. 1015-1026
    • Liu, W.1    Mazarei, M.2    Peng, Y.3    Fethe, M.H.4    Rudis, M.R.5    Lin, J.6    Millwood, R.J.7    Arelli, P.R.8    Stewart, C.N.9
  • 74
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu, S., Sun, Y.H., Shi, R., Clark, C., Li, L. and Chiang, V.L. (2005) Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell, 17, 2186-2203.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 75
    • 47249095055 scopus 로고    scopus 로고
    • Stress-responsive microRNAs in Populus
    • Lu, S., Sun, Y.H. and Chiang, V.L. (2008) Stress-responsive microRNAs in Populus. Plant J. 55, 131-151.
    • (2008) Plant J. , vol.55 , pp. 131-151
    • Lu, S.1    Sun, Y.H.2    Chiang, V.L.3
  • 77
    • 84892443628 scopus 로고    scopus 로고
    • Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection
    • Lucas, S.J., Bastas, K. and Budak, H. (2014) Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection. Gene, 536, 254-264.
    • (2014) Gene , vol.536 , pp. 254-264
    • Lucas, S.J.1    Bastas, K.2    Budak, H.3
  • 78
    • 84879887979 scopus 로고    scopus 로고
    • Evolutionary conservation of microRNA regulatory programs in plant flower development
    • Luo, Y., Guo, Z. and Li, L. (2013) Evolutionary conservation of microRNA regulatory programs in plant flower development. Dev. Biol. 380, 133-144.
    • (2013) Dev. Biol. , vol.380 , pp. 133-144
    • Luo, Y.1    Guo, Z.2    Li, L.3
  • 79
    • 77953193344 scopus 로고    scopus 로고
    • miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
    • Marin, E., Jouannet, V., Herz, A., Lokerse, A.S., Weijers, D., Vaucheret, H., Nussaume, L., Crespi, M.D. and Maizel, A. (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell, 22, 1104-1117.
    • (2010) Plant Cell , vol.22 , pp. 1104-1117
    • Marin, E.1    Jouannet, V.2    Herz, A.3    Lokerse, A.S.4    Weijers, D.5    Vaucheret, H.6    Nussaume, L.7    Crespi, M.D.8    Maizel, A.9
  • 80
    • 33846490889 scopus 로고    scopus 로고
    • Plant lipid binding proteins: properties and applications
    • Marion, D., Bakan, B. and Elmorjani, K. (2007) Plant lipid binding proteins: properties and applications. Biotechnol. Adv. 25, 195-197.
    • (2007) Biotechnol. Adv. , vol.25 , pp. 195-197
    • Marion, D.1    Bakan, B.2    Elmorjani, K.3
  • 81
    • 77952965888 scopus 로고    scopus 로고
    • microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress
    • Martin, R.C., Liu, P.P., Goloviznina, N.A. and Nonogaki, H. (2010) microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress. J. Exp. Bot. 61, 2229-2234.
    • (2010) J. Exp. Bot. , vol.61 , pp. 2229-2234
    • Martin, R.C.1    Liu, P.P.2    Goloviznina, N.A.3    Nonogaki, H.4
  • 82
    • 84898751980 scopus 로고    scopus 로고
    • Biofuel: policy, standardization and recommendation for sustainable future energy supply
    • Masjuki, H.H., Kalam, M.A., Mofijur, M. and Shahabuddin, M. (2013) Biofuel: policy, standardization and recommendation for sustainable future energy supply. Energy Procedia, 42, 577-586.
    • (2013) Energy Procedia , vol.42 , pp. 577-586
    • Masjuki, H.H.1    Kalam, M.A.2    Mofijur, M.3    Shahabuddin, M.4
  • 83
    • 77953129094 scopus 로고    scopus 로고
    • Identification of microRNAs and their targets in switchgrass, a model biofuel plant species
    • Matts, J., Jagadeeswaran, G., Roe, B.A. and Sunkar, R. (2010) Identification of microRNAs and their targets in switchgrass, a model biofuel plant species. J. Plant Physiol. 167, 896-904.
    • (2010) J. Plant Physiol. , vol.167 , pp. 896-904
    • Matts, J.1    Jagadeeswaran, G.2    Roe, B.A.3    Sunkar, R.4
  • 84
    • 84869866763 scopus 로고    scopus 로고
    • Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.)
    • Mehrpooyan, F., Othman, R.Y. and Harikrishna, J.A. (2012) Tissue and temporal expression of miR172 paralogs and the AP2-like target in oil palm (Elaeis guineensis Jacq.). Tree Genet. Genomes, 8, 1331-1343.
    • (2012) Tree Genet. Genomes , vol.8 , pp. 1331-1343
    • Mehrpooyan, F.1    Othman, R.Y.2    Harikrishna, J.A.3
  • 85
    • 79960024314 scopus 로고    scopus 로고
    • Toward microRNA-mediated gene regulatory networks in plants
    • Meng, Y., Shao, C. and Chen, M. (2011) Toward microRNA-mediated gene regulatory networks in plants. Brief. Bioinform. 12, 645-659.
    • (2011) Brief. Bioinform. , vol.12 , pp. 645-659
    • Meng, Y.1    Shao, C.2    Chen, M.3
  • 86
    • 85027952469 scopus 로고    scopus 로고
    • Trends in bioconversion of lignocellulose: biofuels, platform chemicals & biorefinery concept
    • Menon, V. and Rao, M. (2012) Trends in bioconversion of lignocellulose: biofuels, platform chemicals & biorefinery concept. Prog. Energ. Combust. 38, 522-550.
    • (2012) Prog. Energ. Combust. , vol.38 , pp. 522-550
    • Menon, V.1    Rao, M.2
  • 87
    • 84873567679 scopus 로고    scopus 로고
    • The hunting of targets: challenge in miRNA research
    • Moqadam, A.F., Pieters, R. and den Boer, M.L. (2013) The hunting of targets: challenge in miRNA research. Leukemia, 27, 16-23.
    • (2013) Leukemia , vol.27 , pp. 16-23
    • Moqadam, A.F.1    Pieters, R.2    den Boer, M.L.3
  • 91
    • 80052329245 scopus 로고    scopus 로고
    • Lignin variability in plant cell walls: contribution of new models
    • Neutelings, G. (2011) Lignin variability in plant cell walls: contribution of new models. Plant Sci. 181, 379-386.
    • (2011) Plant Sci. , vol.181 , pp. 379-386
    • Neutelings, G.1
  • 92
    • 77958081733 scopus 로고    scopus 로고
    • Production of liquid biofuels from renewable resources
    • Nigam, P.S. and Singh, A. (2011) Production of liquid biofuels from renewable resources. Prog. Energ. Combust. 37, 52-68.
    • (2011) Prog. Energ. Combust. , vol.37 , pp. 52-68
    • Nigam, P.S.1    Singh, A.2
  • 94
    • 84877943691 scopus 로고    scopus 로고
    • Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth
    • Ortiz-Morea, F.A., Vicentini, R., Silva, G.F., Silva, E.M., Carrer, H., Rodrigues, A.P. and Nogueira, F.T. (2013) Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth. J. Exp. Bot. 64, 2307-2320.
    • (2013) J. Exp. Bot. , vol.64 , pp. 2307-2320
    • Ortiz-Morea, F.A.1    Vicentini, R.2    Silva, G.F.3    Silva, E.M.4    Carrer, H.5    Rodrigues, A.P.6    Nogueira, F.T.7
  • 95
    • 84896266859 scopus 로고    scopus 로고
    • Microarray analysis of differentially expressed mRNAs and miRNAs in young leaves of sorghum under dry-down conditions
    • Pasini, L., Bergonti, M., Fracasso, A., Marocco, A. and Amaducci, S. (2014) Microarray analysis of differentially expressed mRNAs and miRNAs in young leaves of sorghum under dry-down conditions. J. Plant Physiol. 171, 537-548.
    • (2014) J. Plant Physiol. , vol.171 , pp. 537-548
    • Pasini, L.1    Bergonti, M.2    Fracasso, A.3    Marocco, A.4    Amaducci, S.5
  • 96
    • 84880831705 scopus 로고    scopus 로고
    • Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    • Patanun, O., Lertpanyasampatha, M., Sojikul, P., Viboonjun, U. and Narangajavana, J. (2013) Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.). Mol. Biotechnol. 53, 257-269.
    • (2013) Mol. Biotechnol. , vol.53 , pp. 257-269
    • Patanun, O.1    Lertpanyasampatha, M.2    Sojikul, P.3    Viboonjun, U.4    Narangajavana, J.5
  • 98
    • 84865142847 scopus 로고    scopus 로고
    • Microbial engineering for the production of advanced biofuels
    • Peralta-Yahya, P.P., Zhang, F., del Cardayre, S.B. and Keasling, J.D. (2012) Microbial engineering for the production of advanced biofuels. Nature, 488, 320-328.
    • (2012) Nature , vol.488 , pp. 320-328
    • Peralta-Yahya, P.P.1    Zhang, F.2    del Cardayre, S.B.3    Keasling, J.D.4
  • 99
    • 84860228070 scopus 로고    scopus 로고
    • Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis
    • Perez-Quintero, A.L., Quintero, A., Urrego, O., Vanegas, P. and Lopez, C. (2012) Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis. BMC Plant Biol. 12, 29.
    • (2012) BMC Plant Biol. , vol.12 , pp. 29
    • Perez-Quintero, A.L.1    Quintero, A.2    Urrego, O.3    Vanegas, P.4    Lopez, C.5
  • 100
    • 84888825171 scopus 로고    scopus 로고
    • Improvement of lignocellulosic biomass in planta: a review of feedstocks, biomass recalcitrance, and strategic manipulation of ideal plants designed for ethanol production and processability
    • Phitsuwan, P., Sakka, K. and Ratanakhanokchai, K. (2013) Improvement of lignocellulosic biomass in planta: a review of feedstocks, biomass recalcitrance, and strategic manipulation of ideal plants designed for ethanol production and processability. Biomass Bioenergy, 58, 390-405.
    • (2013) Biomass Bioenergy , vol.58 , pp. 390-405
    • Phitsuwan, P.1    Sakka, K.2    Ratanakhanokchai, K.3
  • 101
    • 0025602622 scopus 로고
    • Phase change and the regulation of shoot morphogenesis in plants
    • Poethig, R.S. (1990) Phase change and the regulation of shoot morphogenesis in plants. Science, 250, 923-930.
    • (1990) Science , vol.250 , pp. 923-930
    • Poethig, R.S.1
  • 102
    • 84912005881 scopus 로고    scopus 로고
    • Altered lignin biosynthesis using biotechnology to improve lignocellulosic biofuel feedstocks
    • Poovaiah, C.R., Nageswara-Rao, M., Soneji, J.R., Baxter, H.L. and Stewart, C.N. (2014) Altered lignin biosynthesis using biotechnology to improve lignocellulosic biofuel feedstocks. Plant Biotechnol. J. 12, 9, 1163-1173.
    • (2014) Plant Biotechnol. J. , vol.12 , Issue.9 , pp. 1163-1173
    • Poovaiah, C.R.1    Nageswara-Rao, M.2    Soneji, J.R.3    Baxter, H.L.4    Stewart, C.N.5
  • 103
    • 84857443387 scopus 로고    scopus 로고
    • Stem sugar accumulation in sweet sorghum - activity and expression of sucrose metabolizing enzymes and sucrose transporters
    • Qazi, H.A., Paranjpe, S. and Bhargava, S. (2012) Stem sugar accumulation in sweet sorghum - activity and expression of sucrose metabolizing enzymes and sucrose transporters. J. Plant Physiol. 169, 605-613.
    • (2012) J. Plant Physiol. , vol.169 , pp. 605-613
    • Qazi, H.A.1    Paranjpe, S.2    Bhargava, S.3
  • 104
    • 84879780279 scopus 로고    scopus 로고
    • Identification of ta-siRNAs and cis-nat-siRNAs in cassava and their roles in response to cassava bacterial blight
    • Quintero, A., Perez-Quintero, A.L. and Lopez, C. (2013) Identification of ta-siRNAs and cis-nat-siRNAs in cassava and their roles in response to cassava bacterial blight. Genom. Proteom. Bioinform. 11, 172-181.
    • (2013) Genom. Proteom. Bioinform. , vol.11 , pp. 172-181
    • Quintero, A.1    Perez-Quintero, A.L.2    Lopez, C.3
  • 105
    • 84857319061 scopus 로고    scopus 로고
    • Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana
    • Ren, L. and Tang, G. (2012) Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana. Plant Sci. 187, 59-68.
    • (2012) Plant Sci. , vol.187 , pp. 59-68
    • Ren, L.1    Tang, G.2
  • 106
    • 41649118006 scopus 로고    scopus 로고
    • Think you know how miRNAs work? Think again
    • Richter, J.D. (2008) Think you know how miRNAs work? Think again. Nat. Struct. Mol. Biol. 15, 334-336.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 334-336
    • Richter, J.D.1
  • 107
    • 84879073965 scopus 로고    scopus 로고
    • Constitutive expression of the Corngrass1 microRNA in poplar affects plant architecture and stem lignin content and composition
    • Rubinelli, P., Chuck, G., Xu, L. and Meilan, R. (2013) Constitutive expression of the Corngrass1 microRNA in poplar affects plant architecture and stem lignin content and composition. Biomass Bioenergy, 54, 312-321.
    • (2013) Biomass Bioenergy , vol.54 , pp. 312-321
    • Rubinelli, P.1    Chuck, G.2    Xu, L.3    Meilan, R.4
  • 108
    • 84875994369 scopus 로고    scopus 로고
    • Coordination of flower maturation by a regulatory circuit of three microRNAs
    • Rubio-Somoza, I. and Weigel, D. (2013) Coordination of flower maturation by a regulatory circuit of three microRNAs. PLoS Genet. 9, e1003374.
    • (2013) PLoS Genet. , vol.9 , pp. e1003374
    • Rubio-Somoza, I.1    Weigel, D.2
  • 109
    • 84881027399 scopus 로고    scopus 로고
    • Gene use restriction technologies for transgenic plant bioconfinement
    • Sang, Y., Millwood, R. and Stewart, C.N., Jr. (2013) Gene use restriction technologies for transgenic plant bioconfinement. Plant Biotechnol. J. 11, 649-658.
    • (2013) Plant Biotechnol. J. , vol.11 , pp. 649-658
    • Sang, Y.1    Millwood, R.2    Stewart, C.N.3
  • 111
    • 84947033320 scopus 로고    scopus 로고
    • Quantitative trait loci (QTL) underlying biomass yield and plant height in switchgrass
    • Serba, D.D., Daverdin, G., Bouton, J.H., Devos, K.M., Brummer, E.C. and Saha, M.C. (2014) Quantitative trait loci (QTL) underlying biomass yield and plant height in switchgrass. BioEnerg. Res. DOI 10.1007/s12155-014-9523-8.
    • (2014) BioEnerg. Res.
    • Serba, D.D.1    Daverdin, G.2    Bouton, J.H.3    Devos, K.M.4    Brummer, E.C.5    Saha, M.C.6
  • 112
    • 84894058440 scopus 로고    scopus 로고
    • Effects of microbial and non-microbial factors of liquid anaerobic digestion effluent as inoculum on solid-state anaerobic digestion of corn stover
    • Shi, J., Xu, F., Wang, Z., Stiverson, J.A., Yu, Z. and Li, Y. (2014) Effects of microbial and non-microbial factors of liquid anaerobic digestion effluent as inoculum on solid-state anaerobic digestion of corn stover. Bioresour. Technol. 157, 188-196.
    • (2014) Bioresour. Technol. , vol.157 , pp. 188-196
    • Shi, J.1    Xu, F.2    Wang, Z.3    Stiverson, J.A.4    Yu, Z.5    Li, Y.6
  • 113
    • 84875899751 scopus 로고    scopus 로고
    • Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    • Shuai, P., Liang, D., Zhang, Z., Yin, W. and Xia, X. (2013) Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis. BMC Genom. 14, 233.
    • (2013) BMC Genom. , vol.14 , pp. 233
    • Shuai, P.1    Liang, D.2    Zhang, Z.3    Yin, W.4    Xia, X.5
  • 115
    • 84874677498 scopus 로고    scopus 로고
    • A comparison of methods for differential expression analysis of RNA-seq data
    • Soneson, C. and Delorenzi, M. (2013) A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinf. 14, 91.
    • (2013) BMC Bioinf. , vol.14 , pp. 91
    • Soneson, C.1    Delorenzi, M.2
  • 116
    • 84901417366 scopus 로고    scopus 로고
    • Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors
    • Stief, A., Altmann, S., Hoffmann, K., Pant, B.D., Scheible, W.R. and Bäurle, I. (2014) Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors. Plant Cell, 26, 1792-1807.
    • (2014) Plant Cell , vol.26 , pp. 1792-1807
    • Stief, A.1    Altmann, S.2    Hoffmann, K.3    Pant, B.D.4    Scheible, W.R.5    Bäurle, I.6
  • 117
    • 84888416432 scopus 로고    scopus 로고
    • Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis
    • Su, Z., Ma, X., Guo, H., Sukiran, N.L., Guo, B., Assmann, S.M. and Ma, H. (2013) Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis. Plant Cell, 25, 3785-3807.
    • (2013) Plant Cell , vol.25 , pp. 3785-3807
    • Su, Z.1    Ma, X.2    Guo, H.3    Sukiran, N.L.4    Guo, B.5    Assmann, S.M.6    Ma, H.7
  • 118
    • 84862162512 scopus 로고    scopus 로고
    • An approach for Jatropha improvement using pleiotropic QTLs regulating plant growth and seed yield
    • Sun, F., Liu, P., Ye, J., Lo, L., Cao, S., Li, L., Yue, G. and Wang, C. (2012a) An approach for Jatropha improvement using pleiotropic QTLs regulating plant growth and seed yield. Biotechnol. Biofuels, 5, 1-10.
    • (2012) Biotechnol. Biofuels , vol.5 , pp. 1-10
    • Sun, F.1    Liu, P.2    Ye, J.3    Lo, L.4    Cao, S.5    Li, L.6    Yue, G.7    Wang, C.8
  • 119
    • 84859073075 scopus 로고    scopus 로고
    • MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress
    • Sun, G., Stewart, C.N. Jr, Xiao, P. and Zhang, B. (2012b) MicroRNA expression analysis in the cellulosic biofuel crop switchgrass (Panicum virgatum) under abiotic stress. PLoS ONE, 7, e32017.
    • (2012) PLoS ONE , vol.7 , pp. e32017
    • Sun, G.1    Stewart Jr, C.N.2    Xiao, P.3    Zhang, B.4
  • 120
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar, R. and Zhu, J.K. (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 16, 2001-2019.
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 122
    • 77956456653 scopus 로고    scopus 로고
    • Sequencing bias: comparison of different protocols of microRNA library construction
    • Tian, G., Yin, X., Luo, H., Xu, X., Bolund, L., Zhang, X., Gan, S.Q. and Li, N. (2010) Sequencing bias: comparison of different protocols of microRNA library construction. BMC Biotechnol. 10, 64.
    • (2010) BMC Biotechnol. , vol.10 , pp. 64
    • Tian, G.1    Yin, X.2    Luo, H.3    Xu, X.4    Bolund, L.5    Zhang, X.6    Gan, S.Q.7    Li, N.8
  • 123
    • 69249215127 scopus 로고    scopus 로고
    • Conserved microRNAs and their targets in model grass species Brachypodium distachyon
    • Unver, T. and Budak, H. (2009) Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta, 230, 659-669.
    • (2009) Planta , vol.230 , pp. 659-669
    • Unver, T.1    Budak, H.2
  • 124
    • 84873548792 scopus 로고    scopus 로고
    • Identification of miRNA encoded by Jatropha curcas from EST and GSS
    • Vishwakarma, N.P. and Jadeja, V.J. (2013) Identification of miRNA encoded by Jatropha curcas from EST and GSS. Plant Signal Behav. 8, e23152.
    • (2013) Plant Signal Behav. , vol.8 , pp. e23152
    • Vishwakarma, N.P.1    Jadeja, V.J.2
  • 126
    • 79957906653 scopus 로고    scopus 로고
    • Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens
    • Wan, P., Wu, J., Zhou, Y., Xiao, J., Feng, J., Zhao, W., Xiang, S., Jiang, G. and Chen, J.Y. (2011) Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens. Genom. Proteom. Bioinform. 9, 37-44.
    • (2011) Genom. Proteom. Bioinform. , vol.9 , pp. 37-44
    • Wan, P.1    Wu, J.2    Zhou, Y.3    Xiao, J.4    Feng, J.5    Zhao, W.6    Xiang, S.7    Jiang, G.8    Chen, J.Y.9
  • 127
    • 84907384889 scopus 로고    scopus 로고
    • Regulation of flowering time by the miR156-mediated age pathway
    • Wang, J.-W. (2014) Regulation of flowering time by the miR156-mediated age pathway. J. Exp. Bot. 65, 4723-4730.
    • (2014) J. Exp. Bot. , vol.65 , pp. 4723-4730
    • Wang, J.-W.1
  • 128
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
    • Wang, J.W., Wang, L.J., Mao, Y.B., Cai, W.J., Xue, H.W. and Chen, X.Y. (2005) Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell, 17, 2204-2216.
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3    Cai, W.J.4    Xue, H.W.5    Chen, X.Y.6
  • 129
    • 54949093292 scopus 로고    scopus 로고
    • Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana
    • Wang, J., Schwab, R., Czech, B., Mica, E. and Weigel, D. (2008) Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length and organ size in Arabidopsis thaliana. Plant Cell, 20, 1231-1243.
    • (2008) Plant Cell , vol.20 , pp. 1231-1243
    • Wang, J.1    Schwab, R.2    Czech, B.3    Mica, E.4    Weigel, D.5
  • 130
    • 68749095252 scopus 로고    scopus 로고
    • miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana
    • Wang, J.W., Czech, B. and Weigel, D. (2009) miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell, 138, 738-749.
    • (2009) Cell , vol.138 , pp. 738-749
    • Wang, J.W.1    Czech, B.2    Weigel, D.3
  • 132
    • 70350029271 scopus 로고    scopus 로고
    • Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
    • Wei, B., Cai, T., Zhang, R., Li, A., Huo, N., Li, S., Gu, Y.Q., Vogel, J., Jia, J., Qi, Y. and Mao, L. (2009) Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct. Integr. Genomics, 9, 499-511.
    • (2009) Funct. Integr. Genomics , vol.9 , pp. 499-511
    • Wei, B.1    Cai, T.2    Zhang, R.3    Li, A.4    Huo, N.5    Li, S.6    Gu, Y.Q.7    Vogel, J.8    Jia, J.9    Qi, Y.10    Mao, L.11
  • 134
    • 84898009385 scopus 로고    scopus 로고
    • Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon
    • Wei, B., Zhang, R.Z., Guo, J.J., Liu, D.M., Li, A.L., Fan, R.C., Mao, L. and Zhang, X.Q. (2014) Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon. PLoS ONE, 9, e84781.
    • (2014) PLoS ONE , vol.9 , pp. e84781
    • Wei, B.1    Zhang, R.Z.2    Guo, J.J.3    Liu, D.M.4    Li, A.L.5    Fan, R.C.6    Mao, L.7    Zhang, X.Q.8
  • 135
    • 84872797404 scopus 로고    scopus 로고
    • Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation
    • Williamson, V., Kim, A., Xie, B., McMichael, G.O., Gao, Y. and Vladimirov, V. (2013) Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation. Brief. Bioinform. 14, 36-45.
    • (2013) Brief. Bioinform. , vol.14 , pp. 36-45
    • Williamson, V.1    Kim, A.2    Xie, B.3    McMichael, G.O.4    Gao, Y.5    Vladimirov, V.6
  • 136
    • 33750373240 scopus 로고    scopus 로고
    • Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3
    • Wu, G. and Poethig, R.S. (2006) Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3. Development, 133, 3539-3547.
    • (2006) Development , vol.133 , pp. 3539-3547
    • Wu, G.1    Poethig, R.S.2
  • 137
    • 68749100821 scopus 로고    scopus 로고
    • The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
    • Wu, G., Park, M.Y., Conway, S.R., Wang, J.W., Weigel, D. and Poethig, R.S. (2009) The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell, 138, 750-759.
    • (2009) Cell , vol.138 , pp. 750-759
    • Wu, G.1    Park, M.Y.2    Conway, S.R.3    Wang, J.W.4    Weigel, D.5    Poethig, R.S.6
  • 139
    • 84926320934 scopus 로고    scopus 로고
    • Research progress in digging and validation of miRNA target genes using experimental methods
    • Xiao, L., Xi, B., Hua, C., Wei, J., Xin, L., Li-li, T. and Yan-ming, Z. (2012) Research progress in digging and validation of miRNA target genes using experimental methods. J. NE. Ag. Univ. (E. E.) 19, 86-96.
    • (2012) J. NE. Ag. Univ. (E. E.) , vol.19 , pp. 86-96
    • Xiao, L.1    Xi, B.2    Hua, C.3    Wei, J.4    Xin, L.5    Li-li, T.6    Yan-ming, Z.7
  • 140
    • 77953683331 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum)
    • Xie, F., Frazier, T.P. and Zhang, B. (2010) Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum). Planta, 232, 417-434.
    • (2010) Planta , vol.232 , pp. 417-434
    • Xie, F.1    Frazier, T.P.2    Zhang, B.3
  • 141
    • 84896399698 scopus 로고    scopus 로고
    • High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress
    • Xie, F., Stewart, C.N. Jr, Taki, F.A., He, Q., Liu, H. and Zhang, B. (2014) High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress. Plant Biotechnol. J. 12, 354-366.
    • (2014) Plant Biotechnol. J. , vol.12 , pp. 354-366
    • Xie, F.1    Stewart Jr, C.N.2    Taki, F.A.3    He, Q.4    Liu, H.5    Zhang, B.6
  • 142
    • 84926286805 scopus 로고    scopus 로고
    • Global microRNA modification in cotton (Gossypium hirsutum L.)
    • Xie, F.L., Wang, Q.L. and Zhang, B.H. (2015) Global microRNA modification in cotton (Gossypium hirsutum L.). Plant Biotechnol. J., In press. doi: 10.1111/pbi.12271.
    • (2015) Plant Biotechnol. J.
    • Xie, F.L.1    Wang, Q.L.2    Zhang, B.H.3
  • 144
    • 84891357101 scopus 로고    scopus 로고
    • Inferring the soybean (Glycine max) microRNA functional network based on target gene network
    • Xu, Y., Guo, M., Liu, X., Wang, C. and Liu, Y. (2014) Inferring the soybean (Glycine max) microRNA functional network based on target gene network. Bioinformatics, 30, 94-103.
    • (2014) Bioinformatics , vol.30 , pp. 94-103
    • Xu, Y.1    Guo, M.2    Liu, X.3    Wang, C.4    Liu, Y.5
  • 145
    • 79551545369 scopus 로고    scopus 로고
    • Overexpression of an B-box protein gene reduces abiotic stress tolerance and promotes root growth in rice
    • Yan, Y., Chen, X., Yang, K., Sun, Z., Fu, Y., Zhang, Y. and Fang, R. (2011) Overexpression of an B-box protein gene reduces abiotic stress tolerance and promotes root growth in rice. Mol. Plant. 4, 190-197.
    • (2011) Mol. Plant. , vol.4 , pp. 190-197
    • Yan, Y.1    Chen, X.2    Yang, K.3    Sun, Z.4    Fu, Y.5    Zhang, Y.6    Fang, R.7
  • 146
    • 55849106319 scopus 로고    scopus 로고
    • Pretreatment: the key to unlocking low-cost cellulosic ethanol
    • Yang, B. and Wyman, C.E. (2008) Pretreatment: the key to unlocking low-cost cellulosic ethanol. Biofuels Bioprod. Biorefin. 2, 26-40.
    • (2008) Biofuels Bioprod. Biorefin. , vol.2 , pp. 26-40
    • Yang, B.1    Wyman, C.E.2
  • 147
    • 78751532092 scopus 로고    scopus 로고
    • Vegetative phase change is mediated by a leaf-derived signal that represses the transcription of miR156
    • Yang, L., Conway, S.R. and Poethig, R.S. (2011) Vegetative phase change is mediated by a leaf-derived signal that represses the transcription of miR156. Development, 138, 245-249.
    • (2011) Development , vol.138 , pp. 245-249
    • Yang, L.1    Conway, S.R.2    Poethig, R.S.3
  • 148
    • 84879062749 scopus 로고    scopus 로고
    • Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C
    • Yang, L., Xu, M., Koo, Y., He, J. and Poethig, R.S. (2013) Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C. eLife, 2, e00260.
    • (2013) eLife , vol.2 , pp. e00260
    • Yang, L.1    Xu, M.2    Koo, Y.3    He, J.4    Poethig, R.S.5
  • 149
    • 84907308741 scopus 로고    scopus 로고
    • TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis
    • Yang, Z.B., Geng, X., He, C., Zhang, F., Wang, R., Horst, W.J. and Ding, Z. (2014) TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. Plant Cell, 26, 2889-2904.
    • (2014) Plant Cell , vol.26 , pp. 2889-2904
    • Yang, Z.B.1    Geng, X.2    He, C.3    Zhang, F.4    Wang, R.5    Horst, W.J.6    Ding, Z.7
  • 152
    • 84879484741 scopus 로고    scopus 로고
    • Status of molecular breeding for improving Jatropha curcas and biodiesel
    • Yue, G.H., Sun, F. and Liu, P. (2013) Status of molecular breeding for improving Jatropha curcas and biodiesel. Renewable Sustainable Energy Rev. 26, 332-343.
    • (2013) Renewable Sustainable Energy Rev. , vol.26 , pp. 332-343
    • Yue, G.H.1    Sun, F.2    Liu, P.3
  • 154
    • 77950360655 scopus 로고    scopus 로고
    • Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    • Zeng, C., Wang, W., Zheng, Y., Chen, X., Bo, W., Song, S., Zhang, W. and Peng, M. (2010) Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants. Nucleic Acids Res. 38, 981-995.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 981-995
    • Zeng, C.1    Wang, W.2    Zheng, Y.3    Chen, X.4    Bo, W.5    Song, S.6    Zhang, W.7    Peng, M.8
  • 155
    • 84890877713 scopus 로고    scopus 로고
    • Role of microRNAs in plant responses to nutrient stress
    • Zeng, H., Wang, G., Hu, X., Wang, H., Du, L. and Zhu, Y. (2014a) Role of microRNAs in plant responses to nutrient stress. Plant Soil, 374, 1005-1021.
    • (2014) Plant Soil , vol.374 , pp. 1005-1021
    • Zeng, H.1    Wang, G.2    Hu, X.3    Wang, H.4    Du, L.5    Zhu, Y.6
  • 156
    • 84886302670 scopus 로고    scopus 로고
    • Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels
    • Zeng, Y., Zhao, S., Yang, S. and Ding, S.-Y. (2014b) Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels. Curr. Opin. Biotech. 27, 38-45.
    • (2014) Curr. Opin. Biotech. , vol.27 , pp. 38-45
    • Zeng, Y.1    Zhao, S.2    Yang, S.3    Ding, S.-Y.4
  • 157
    • 84910073298 scopus 로고    scopus 로고
    • MicroRNA-based biotechnology for plant improvement
    • Zhang, B. and Wang, Q. (2015) MicroRNA-based biotechnology for plant improvement. J. Cell. Physiol. 230, 1, 1-15. In Press.
    • (2015) J. Cell. Physiol. , vol.230 , Issue.1 , pp. 1-15
    • Zhang, B.1    Wang, Q.2
  • 158
    • 29144527030 scopus 로고    scopus 로고
    • Plant microRNA: a small regulatory molecule with big impact
    • Zhang, B.H., Pan, X.P., Cobb, G.P. and Anderson, T.A. (2006) Plant microRNA: a small regulatory molecule with big impact. Dev. Biol. 289, 3-16.
    • (2006) Dev. Biol. , vol.289 , pp. 3-16
    • Zhang, B.H.1    Pan, X.P.2    Cobb, G.P.3    Anderson, T.A.4
  • 159
    • 70350438585 scopus 로고    scopus 로고
    • Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    • Zhang, J., Xu, Y., Huan, Q. and Chong, K. (2009) Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genom. 10, 449.
    • (2009) BMC Genom. , vol.10 , pp. 449
    • Zhang, J.1    Xu, Y.2    Huan, Q.3    Chong, K.4
  • 160
    • 81955164851 scopus 로고    scopus 로고
    • Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum
    • Zhang, L., Zheng, Y., Jagadeeswaran, G., Li, Y., Gowdu, K. and Sunkar, R. (2011) Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum. Genomics, 98, 460-468.
    • (2011) Genomics , vol.98 , pp. 460-468
    • Zhang, L.1    Zheng, Y.2    Jagadeeswaran, G.3    Li, Y.4    Gowdu, K.5    Sunkar, R.6
  • 161
    • 84880880764 scopus 로고    scopus 로고
    • Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize
    • Zhao, Y., Xu, Z., Mo, Q., Zou, C., Li, W., Xu, Y. and Xie, C. (2013) Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize. Ann. Bot. 112, 633-642.
    • (2013) Ann. Bot. , vol.112 , pp. 633-642
    • Zhao, Y.1    Xu, Z.2    Mo, Q.3    Zou, C.4    Li, W.5    Xu, Y.6    Xie, C.7
  • 162
    • 84883214673 scopus 로고    scopus 로고
    • MicroRNA-mediated gene regulation: potential applications for plant genetic engineering
    • Zhou, M. and Luo, H. (2013) MicroRNA-mediated gene regulation: potential applications for plant genetic engineering. Plant Mol. Biol. 83, 59-75.
    • (2013) Plant Mol. Biol. , vol.83 , pp. 59-75
    • Zhou, M.1    Luo, H.2
  • 163
    • 84878155989 scopus 로고    scopus 로고
    • Regulation of flowering time by microRNAs
    • Zhou, C.M. and Wang, J.W. (2013) Regulation of flowering time by microRNAs. J. Genet. Genomics, 40, 211-215.
    • (2013) J. Genet. Genomics , vol.40 , pp. 211-215
    • Zhou, C.M.1    Wang, J.W.2
  • 164
    • 79953857473 scopus 로고    scopus 로고
    • Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
    • Zhu, H., Hu, F., Wang, R., Zhou, X., Sze, S.-H., Liou Lisa, W., Barefoot, A., Dickman, M. and Zhang, X. (2011a) Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell, 145, 242-256.
    • (2011) Cell , vol.145 , pp. 242-256
    • Zhu, H.1    Hu, F.2    Wang, R.3    Zhou, X.4    Sze, S.-H.5    Liou Lisa, W.6    Barefoot, A.7    Dickman, M.8    Zhang, X.9
  • 165
    • 84855869914 scopus 로고    scopus 로고
    • Discovering numerical laws of plant microRNA by evolution
    • Zhu, R., Li, X. and Chen, Q. (2011b) Discovering numerical laws of plant microRNA by evolution. Biochem. Biophys. Res. Commun. 415, 313-318.
    • (2011) Biochem. Biophys. Res. Commun. , vol.415 , pp. 313-318
    • Zhu, R.1    Li, X.2    Chen, Q.3
  • 167
    • 84892466713 scopus 로고    scopus 로고
    • miRClassify: An advanced web server for miRNA family classification and annotation
    • Zou, Q., Mao, Y., Hu, L., Wu, Y. and Ji, Z. (2014) miRClassify: An advanced web server for miRNA family classification and annotation. Comput. Biol. Med. 45, 157-160.
    • (2014) Comput. Biol. Med. , vol.45 , pp. 157-160
    • Zou, Q.1    Mao, Y.2    Hu, L.3    Wu, Y.4    Ji, Z.5


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