-
1
-
-
85047683772
-
Brachypodium distachyon A new model system for functional genomics in grasses
-
Draper J, Mur LA, Jenkins G, Ghosh-Biswas GC, Bablak P, Hasterok R, Routledge AP Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol 2001, 127:1539-1555.
-
(2001)
Plant Physiol
, vol.127
, pp. 1539-1555
-
-
Draper, J.1
Mur, L.A.2
Jenkins, G.3
Ghosh-Biswas, G.C.4
Bablak, P.5
Hasterok, R.6
Routledge, A.P.7
-
2
-
-
79959813865
-
Exploiting the Brachypodium tool box in cereal and grass research
-
Mur LA, Allainguillaume J, Catalán P, Hasterok R, Jenkins G, Lesniewska K, Thomas I, Vogel J Exploiting the Brachypodium tool box in cereal and grass research. New Phytol 2011, 191:334-347.
-
(2011)
New Phytol
, vol.191
, pp. 334-347
-
-
Mur, L.A.1
Allainguillaume, J.2
Catalán, P.3
Hasterok, R.4
Jenkins, G.5
Lesniewska, K.6
Thomas, I.7
Vogel, J.8
-
3
-
-
15244359017
-
A rapid and efficient transformation protocol for the grass Brachypodium distachyon
-
Christiansen P, Andersen CH, Didion T, Folling M, Nielsen KK A rapid and efficient transformation protocol for the grass Brachypodium distachyon. Plant Cell Rep 2005, 23:751-758.
-
(2005)
Plant Cell Rep
, vol.23
, pp. 751-758
-
-
Christiansen, P.1
Andersen, C.H.2
Didion, T.3
Folling, M.4
Nielsen, K.K.5
-
4
-
-
40349093032
-
Agrobacterium-mediated transformation of the temperate grass Brachypodium distachyon (genotype Bd21) for T-DNA insertional mutagenesis
-
Vain P, Worland B, Thole V, McKenzie N, Alves SC, Opanowicz M, Fish LJ, Bevan MW, Snape JW Agrobacterium-mediated transformation of the temperate grass Brachypodium distachyon (genotype Bd21) for T-DNA insertional mutagenesis. Plant Biotechnol J 2008, 6:236-245.
-
(2008)
Plant Biotechnol J
, vol.6
, pp. 236-245
-
-
Vain, P.1
Worland, B.2
Thole, V.3
McKenzie, N.4
Alves, S.C.5
Opanowicz, M.6
Fish, L.J.7
Bevan, M.W.8
Snape, J.W.9
-
5
-
-
79958220829
-
A T-DNA mutation in the RNA helicase eIF4A confers a dose-dependent dwarfing phenotype in Brachypodium distachyon
-
Vain P, Thole V, Worland B, Opanowicz M, Bush MS, Doonan JH A T-DNA mutation in the RNA helicase eIF4A confers a dose-dependent dwarfing phenotype in Brachypodium distachyon. Plant J 2011, 66:929-940.
-
(2011)
Plant J
, vol.66
, pp. 929-940
-
-
Vain, P.1
Thole, V.2
Worland, B.3
Opanowicz, M.4
Bush, M.S.5
Doonan, J.H.6
-
6
-
-
84855871354
-
T-DNA mutagenesis in Brachypodium distachyon
-
Thole V, Peraldi A, Worland B, Nicholson P, Doonan JH, Vain P T-DNA mutagenesis in Brachypodium distachyon. J Exp Bot 2012, 63:567-576.
-
(2012)
J Exp Bot
, vol.63
, pp. 567-576
-
-
Thole, V.1
Peraldi, A.2
Worland, B.3
Nicholson, P.4
Doonan, J.H.5
Vain, P.6
-
7
-
-
0035103949
-
Evolutionary history of the grasses
-
Kellogg EA Evolutionary history of the grasses. Plant Physiol 2001, 125:1198-1205.
-
(2001)
Plant Physiol
, vol.125
, pp. 1198-1205
-
-
Kellogg, E.A.1
-
8
-
-
55949116721
-
Analysis of saccharification in Brachypodium distachyon stems under mild conditions of hydrolysis
-
Gomez LD, Bristow JK, Statham ER, McQueen-Mason SJ Analysis of saccharification in Brachypodium distachyon stems under mild conditions of hydrolysis. Biotechnol Biofuels 2008, 1:15.
-
(2008)
Biotechnol Biofuels
, vol.1
, pp. 15
-
-
Gomez, L.D.1
Bristow, J.K.2
Statham, E.R.3
McQueen-Mason, S.J.4
-
9
-
-
84865605458
-
Small RNAs in development - insights from plants
-
Chen X Small RNAs in development - insights from plants. Curr Opin Genet Dev 2012, 22:361-367.
-
(2012)
Curr Opin Genet Dev
, vol.22
, pp. 361-367
-
-
Chen, X.1
-
10
-
-
47849093133
-
Endogenous small RNAs and antibacterial immunity in plants
-
Jin H Endogenous small RNAs and antibacterial immunity in plants. FEBS Lett 2008, 582:2679-2684.
-
(2008)
FEBS Lett
, vol.582
, pp. 2679-2684
-
-
Jin, H.1
-
12
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
13
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136:669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
14
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008, 320:1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
15
-
-
68949115601
-
Biochemical evidence for translational repression by Arabidopsis microRNAs
-
Lanet E, Delannoy E, Sormani R, Floris M, Brodersen P, Crété P, Voinnet O, Robaglia C Biochemical evidence for translational repression by Arabidopsis microRNAs. Plant Cell 2009, 21:1762-1768.
-
(2009)
Plant Cell
, vol.21
, pp. 1762-1768
-
-
Lanet, E.1
Delannoy, E.2
Sormani, R.3
Floris, M.4
Brodersen, P.5
Crété, P.6
Voinnet, O.7
Robaglia, C.8
-
16
-
-
44749093486
-
Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases
-
Dugas DV, Bartel B Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. Plant Mol Biol 2008, 67:403-417.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 403-417
-
-
Dugas, D.V.1
Bartel, B.2
-
17
-
-
77953247247
-
Translational inhibition by microRNAs in plants
-
Yu B, Wang H Translational inhibition by microRNAs in plants. Prog Mol Subcell Biol 2010, 50:41-57.
-
(2010)
Prog Mol Subcell Biol
, vol.50
, pp. 41-57
-
-
Yu, B.1
Wang, H.2
-
18
-
-
77951974552
-
DNA methylation mediated by a microRNA pathway
-
Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y DNA methylation mediated by a microRNA pathway. Mol Cell 2010, 14:465-475.
-
(2010)
Mol Cell
, vol.14
, pp. 465-475
-
-
Wu, L.1
Zhou, H.2
Zhang, Q.3
Zhang, J.4
Ni, F.5
Liu, C.6
Qi, Y.7
-
19
-
-
17444430392
-
microRNA-directed phasing during transacting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC microRNA-directed phasing during transacting siRNA biogenesis in plants. Cell 2005, 121:207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
20
-
-
24944491201
-
A pathway for the biogenesis of tranacting siRNAs in Arabidopsis
-
Yoshikawa M, Peragine A, Park MY, Poethig RS A pathway for the biogenesis of transacting siRNAs in Arabidopsis. Genes Dev 2005, 19:2164-2175.
-
(2005)
Genes Dev
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
21
-
-
82955207556
-
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, transacting siRNAs
-
Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, transacting siRNAs. Genes Dev 2011, 25:2540-2553.
-
(2011)
Genes Dev
, vol.25
, pp. 2540-2553
-
-
Zhai, J.1
Jeong, D.H.2
De Paoli, E.3
Park, S.4
Rosen, B.D.5
Li, Y.6
González, A.J.7
Yan, Z.8
Kitto, S.L.9
Grusak, M.A.10
Jackson, S.A.11
Stacey, G.12
Cook, D.R.13
Green, P.J.14
Sherrier, D.J.15
Meyers, B.C.16
-
22
-
-
84860126087
-
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BA, Baulcombe DC A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 2012, 24:859-874.
-
(2012)
Plant Cell
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.M.2
Patel, K.3
Bond, D.M.4
Santos, B.A.5
Baulcombe, D.C.6
-
23
-
-
34250717043
-
Genome-wide analysis of the RNADEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting
-
Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC Genome-wide analysis of the RNADEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 2007, 19:926-942.
-
(2007)
Plant Cell
, vol.19
, pp. 926-942
-
-
Howell, M.D.1
Fahlgren, N.2
Chapman, E.J.3
Cumbie, J.S.4
Sullivan, C.M.5
Givan, S.A.6
Kasschau, K.D.7
Carrington, J.C.8
-
24
-
-
84863393281
-
MicroRNA regulation of plant innate immune receptors
-
Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B MicroRNA regulation of plant innate immune receptors. Proc Natl Acad Sci USA 2012, 109:1790-1795.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 1790-1795
-
-
Li, F.1
Pignatta, D.2
Bendix, C.3
Brunkard, J.O.4
Cohn, M.M.5
Tung, J.6
Sun, H.7
Kumar, P.8
Baker, B.9
-
25
-
-
33750440526
-
A two-hit trigger for siRNA biogenesis in plants
-
Axtell MJ, Jan C, Rajagopalan R, Bartel DP A two-hit trigger for siRNA biogenesis in plants. Cell 2006, 127:565-577.
-
(2006)
Cell
, vol.127
, pp. 565-577
-
-
Axtell, M.J.1
Jan, C.2
Rajagopalan, R.3
Bartel, D.P.4
-
26
-
-
79953086307
-
Evolution and functional diversification of miRNA genes
-
Cuperus JT, Fahlgren N, Carrington JC Evolution and functional diversification of miRNA genes. Plant Cell 2011, 23:431-442.
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
27
-
-
77956989755
-
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants
-
Chen HM, Chen LT, Patel K, Li YH, Baulcombe DC, Wu SH 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci USA 2010, 107:15269-15274.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 15269-15274
-
-
Chen, H.M.1
Chen, L.T.2
Patel, K.3
Li, Y.H.4
Baulcombe, D.C.5
Wu, S.H.6
-
28
-
-
77955418697
-
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
-
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol 2010, 17:997-1003.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 997-1003
-
-
Cuperus, J.T.1
Carbonell, A.2
Fahlgren, N.3
Garcia-Ruiz, H.4
Burke, R.T.5
Takeda, A.6
Sullivan, C.M.7
Gilbert, S.D.8
Montgomery, T.A.9
Carrington, J.C.10
-
29
-
-
84857136650
-
Plant secondary siRNA production determined by microRNA-duplex structure
-
Manavella PA, Koenig D, Weigel D Plant secondary siRNA production determined by microRNA-duplex structure. Proc Natl Acad Sci USA 2012, 109:2461-2466.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 2461-2466
-
-
Manavella, P.A.1
Koenig, D.2
Weigel, D.3
-
30
-
-
68149119262
-
Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
-
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res 2009, 19:1429-1440.
-
(2009)
Genome Res
, vol.19
, pp. 1429-1440
-
-
Johnson, C.1
Kasprzewska, A.2
Tennessen, K.3
Fernandes, J.4
Nan, G.L.5
Walbot, V.6
Sundaresan, V.7
Vance, V.8
Bowman, L.H.9
-
31
-
-
76749150030
-
The International Brachypodium Initiative: Genome sequencing and analysis of the model grass Brachypodium, distachyon
-
The International Brachypodium Initiative: Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 2010, 463:763-768.
-
(2010)
Nature
, vol.463
, pp. 763-768
-
-
-
32
-
-
84856288115
-
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
-
Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong DH, Nakano M, Cao S, Liu C, Chu C, Wang XJ, Green PJ, Meyers BC, Cao X Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J 2012, 69:462-474.
-
(2012)
Plant J
, vol.69
, pp. 462-474
-
-
Song, X.1
Li, P.2
Zhai, J.3
Zhou, M.4
Ma, L.5
Liu, B.6
Jeong, D.H.7
Nakano, M.8
Cao, S.9
Liu, C.10
Chu, C.11
Wang, X.J.12
Green, P.J.13
Meyers, B.C.14
Cao, X.15
-
33
-
-
33646204476
-
Sweating the small stuff: microRNA discovery in plants
-
Meyers BC, Souret FF, Lu C, Green PJ Sweating the small stuff: microRNA discovery in plants. Curr Opin Biotechnol 2006, 17:139-146.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 139-146
-
-
Meyers, B.C.1
Souret, F.F.2
Lu, C.3
Green, P.J.4
-
34
-
-
84863012576
-
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
-
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 2011, 23:4185-4207.
-
(2011)
Plant Cell
, vol.23
, pp. 4185-4207
-
-
Jeong, D.H.1
Park, S.2
Zhai, J.3
Gurazada, S.G.4
De Paoli, E.5
Meyers, B.C.6
Green, P.J.7
-
35
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol 2008, 26:407-415.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
Rajewsky, N.7
-
36
-
-
60149090481
-
Criteria for annotation of plant MicroRNAs
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK Criteria for annotation of plant MicroRNAs. Plant Cell 2008, 20:3186-3190.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
Bowman, J.L.6
Cao, X.7
Carrington, J.C.8
Chen, X.9
Green, P.J.10
Griffiths-Jones, S.11
Jacobsen, S.E.12
Mallory, A.C.13
Martienssen, R.A.14
Poethig, R.S.15
Qi, Y.16
Vaucheret, H.17
Voinnet, O.18
Watanabe, Y.19
Weigel, D.20
Zhu, J.K.21
more..
-
37
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011, 39:D152-D157.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D152-D157
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
38
-
-
69249215127
-
Conserved microRNAs and their targets in model grass species Brachypodium distachyon
-
Unver T, Budak H Conserved microRNAs and their targets in model grass species Brachypodium distachyon. Planta 2009, 230:659-669.
-
(2009)
Planta
, vol.230
, pp. 659-669
-
-
Unver, T.1
Budak, H.2
-
39
-
-
70350029271
-
Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L) and Brachypodium distachyon (L.) Beauv
-
Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Funct Integr Genomics 2009, 9:499-511.
-
(2009)
Funct Integr Genomics
, vol.9
, pp. 499-511
-
-
Wei, B.1
Cai, T.2
Zhang, R.3
Li, A.4
Huo, N.5
Li, S.6
Gu, Y.Q.7
Vogel, J.8
Jia, J.9
Qi, Y.10
Mao, L.11
-
40
-
-
70350438585
-
Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
-
Zhang J, Xu Y, Huan Q, Chong K Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response. BMC Genomics 2009, 10:449.
-
(2009)
BMC Genomics
, vol.10
, pp. 449
-
-
Zhang, J.1
Xu, Y.2
Huan, Q.3
Chong, K.4
-
41
-
-
79955524820
-
Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
-
Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs. Genomics 2011, 97:282-293.
-
(2011)
Genomics
, vol.97
, pp. 282-293
-
-
Baev, V.1
Milev, I.2
Naydenov, M.3
Apostolova, E.4
Minkov, G.5
Minkov, I.6
Yahubyan, G.7
-
42
-
-
84875630642
-
Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
-
Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. Mol Plant 2013, 6:423-443.
-
(2013)
Mol Plant
, vol.6
, pp. 423-443
-
-
Bertolini, E.1
Verelst, W.2
Horner, D.S.3
Gianfranceschi, L.4
Piccolo, V.5
Inze, D.6
Pe, M.E.7
Mica, E.8
-
43
-
-
43449091567
-
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
-
Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 2008, 18:758-762.
-
(2008)
Curr Biol
, vol.18
, pp. 758-762
-
-
Addo-Quaye, C.1
Eshoo, T.W.2
Bartel, D.P.3
Axtell, M.J.4
-
44
-
-
49449118943
-
Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
-
German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 2008, 26:941-946.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 941-946
-
-
German, M.A.1
Pillay, M.2
Jeong, D.H.3
Hetawal, A.4
Luo, S.5
Janardhanan, P.6
Kannan, V.7
Rymarquis, L.A.8
Nobuta, K.9
German, R.10
De Paoli, E.11
Lu, C.12
Schroth, G.13
Meyers, B.C.14
Green, P.J.15
-
45
-
-
44449142226
-
A link between RNA metabolism and silencing affecting Arabidopsis development
-
Gregory BD, O'Malley RC, Lister R, Urich MA, Tonti-Filippini J, Chen H, Millar AH, Ecker JR A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell 2008, 14:854-866.
-
(2008)
Dev Cell
, vol.14
, pp. 854-866
-
-
Gregory, B.D.1
O'Malley, R.C.2
Lister, R.3
Urich, M.A.4
Tonti-Filippini, J.5
Chen, H.6
Millar, A.H.7
Ecker, J.R.8
-
46
-
-
77952832325
-
Transcriptome-wide identification of microRNA targets in rice
-
Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R Transcriptome-wide identification of microRNA targets in rice. Plant J 2010, 62:742-759.
-
(2010)
Plant J
, vol.62
, pp. 742-759
-
-
Li, Y.F.1
Zheng, Y.2
Addo-Quaye, C.3
Zhang, L.4
Saini, A.5
Jagadeeswaran, G.6
Axtell, M.J.7
Zhang, W.8
Sunkar, R.9
-
47
-
-
84960125795
-
Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)
-
Zhou M, Gu L, Li P, Song X, Chen Z, Wei L, Cao X Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica). Frontiers Biol 2010, 5:67-90.
-
(2010)
Frontiers Biol
, vol.5
, pp. 67-90
-
-
Zhou, M.1
Gu, L.2
Li, P.3
Song, X.4
Chen, Z.5
Wei, L.6
Cao, X.7
-
48
-
-
73249121905
-
Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome
-
Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, Axtell MJ Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. RNA 2009, 15:2112-2121.
-
(2009)
RNA
, vol.15
, pp. 2112-2121
-
-
Addo-Quaye, C.1
Snyder, J.A.2
Park, Y.B.3
Li, Y.F.4
Sunkar, R.5
Axtell, M.J.6
-
49
-
-
78650971549
-
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
-
Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 2011, 11:5.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 5
-
-
Song, Q.X.1
Liu, Y.F.2
Hu, X.Y.3
Zhang, W.K.4
Ma, B.5
Chen, S.Y.6
Zhang, J.S.7
-
50
-
-
77953489252
-
Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
-
Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 2010, 62:960-976.
-
(2010)
Plant J
, vol.62
, pp. 960-976
-
-
Pantaleo, V.1
Szittya, G.2
Moxon, S.3
Miozzi, L.4
Moulton, V.5
Dalmay, T.6
Burgyan, J.7
-
51
-
-
84859430575
-
Identification of miRNAs and their target genes using deep sequencing and degradome analysis in trifoliate orange [Poncirus trifoliata L Raf] [corrected]
-
Zhang JZ, Ai XY, Guo WW, Peng SA, Deng XX, Hu CG Identification of miRNAs and their target genes using deep sequencing and degradome analysis in trifoliate orange [Poncirus trifoliata L. Raf] [corrected]. Mol Biotechnol 2012, 51:44-57.
-
(2012)
Mol Biotechnol
, vol.51
, pp. 44-57
-
-
Zhang, J.Z.1
Ai, X.Y.2
Guo, W.W.3
Peng, S.A.4
Deng, X.X.5
Hu, C.G.6
-
52
-
-
84864221484
-
miRNA regulation in the early development of barley seed
-
Curaba J, Spriggs A, Taylor J, Li Z, Helliwell C miRNA regulation in the early development of barley seed. BMC Plant Biol 2012, 12:120.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 120
-
-
Curaba, J.1
Spriggs, A.2
Taylor, J.3
Li, Z.4
Helliwell, C.5
-
53
-
-
84883156624
-
A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon
-
Zhang J, Mao Z, Chong K A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon. Genome Biol 2013, 14:R92.
-
(2013)
Genome Biol
, vol.14
, pp. R92
-
-
Zhang, J.1
Mao, Z.2
Chong, K.3
-
54
-
-
79955379930
-
Vive la difference: biogenesis and evolution of microRNAs in plants and animals
-
Axtell MJ, Westholm JO, Lai EC Vive la difference: biogenesis and evolution of microRNAs in plants and animals. Genome Biol 2011, 12:221.
-
(2011)
Genome Biol
, vol.12
, pp. 221
-
-
Axtell, M.J.1
Westholm, J.O.2
Lai, E.C.3
-
55
-
-
76349105277
-
Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins
-
Merchan F, Boualem A, Crespi M, Frugier F Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins. Genome Biol 2009, 10:R136.
-
(2009)
Genome Biol
, vol.10
, pp. R136
-
-
Merchan, F.1
Boualem, A.2
Crespi, M.3
Frugier, F.4
-
56
-
-
27844526222
-
A miRNA involved in phosphatestarvation response in Arabidopsis
-
Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK A miRNA involved in phosphatestarvation response in Arabidopsis. Curr Biol 2005, 15:2038-2043.
-
(2005)
Curr Biol
, vol.15
, pp. 2038-2043
-
-
Fujii, H.1
Chiou, T.J.2
Lin, S.I.3
Aung, K.4
Zhu, J.K.5
-
57
-
-
33745963372
-
pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene
-
Aung K, Lin S-I, Wu C-C, Huang Y-T, Su C-l, Chiou T-J pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol 2006, 141:1000-1011.
-
(2006)
Plant Physiol
, vol.141
, pp. 1000-1011
-
-
Aung, K.1
Lin, S.-I.2
Wu, C.-C.3
Huang, Y.-T.4
Su, C.-L.5
Chiou, T.-J.6
-
58
-
-
33745960196
-
PHO2, MicroRNA399, and PHR1 define a phosphate-signaling pathway in plants
-
Bari R, Datt Pant B, Stitt M, Scheible W-R PHO2, MicroRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 2006, 141:988-999.
-
(2006)
Plant Physiol
, vol.141
, pp. 988-999
-
-
Bari, R.1
Datt Pant, B.2
Stitt, M.3
Scheible, W.-R.4
-
59
-
-
33745270651
-
Regulation of phosphate homeostasis by microRNA in Arabidopsis
-
Chiou T-J, Aung K, Lin S-I, Wu C-C, Chiang S-F, Su C-L Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell 2006, 18:412-421.
-
(2006)
Plant Cell
, vol.18
, pp. 412-421
-
-
Chiou, T.-J.1
Aung, K.2
Lin, S.-I.3
Wu, C.-C.4
Chiang, S.-F.5
Su, C.-L.6
-
60
-
-
71049136041
-
Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing 10 1104/pp. 109. 147280
-
Hsieh L-C, Lin S-I, Shih AC-C, Chen J-W, Lin W-Y, Tseng C-Y, Li W-H, Chiou T-J Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing 10.1104/pp. 109.147280. Plant Physiol 2009, 151:2120-2132.
-
(2009)
Plant Physiol
, vol.151
, pp. 2120-2132
-
-
Hsieh, L.-C.1
Lin, S.-I.2
Shih, A.-C.3
Chen, J.-W.4
Lin, W.-Y.5
Tseng, C.-Y.6
Li, W.-H.7
Chiou, T.-J.8
-
61
-
-
61349097169
-
Involvement of OsSPX1 in phosphate homeostasis in rice
-
Wang C, Ying S, Huang H, Li K, Wu P, Shou H Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J 2009, 57:895-904.
-
(2009)
Plant J
, vol.57
, pp. 895-904
-
-
Wang, C.1
Ying, S.2
Huang, H.3
Li, K.4
Wu, P.5
Shou, H.6
-
62
-
-
79959988694
-
LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice
-
Hu B, Zhu C, Li F, Tang J, Wang Y, Lin A, Liu L, Che R, Chu C LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice. Plant Physiol 2011, 156:1101-1115.
-
(2011)
Plant Physiol
, vol.156
, pp. 1101-1115
-
-
Hu, B.1
Zhu, C.2
Li, F.3
Tang, J.4
Wang, Y.5
Lin, A.6
Liu, L.7
Che, R.8
Chu, C.9
-
63
-
-
3242691607
-
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets
-
Souret FF, Kastenmayer JP, Green PJ AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets. Mol Cell 2004, 15:173-183.
-
(2004)
Mol Cell
, vol.15
, pp. 173-183
-
-
Souret, F.F.1
Kastenmayer, J.P.2
Green, P.J.3
-
64
-
-
79951527525
-
Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories
-
Rymarquis LA, Souret FF, Green PJ Evidence that XRN4, an Arabidopsis homolog of exoribonuclease XRN1, preferentially impacts transcripts with certain sequences or in particular functional categories. RNA 2011, 17:501-511.
-
(2011)
RNA
, vol.17
, pp. 501-511
-
-
Rymarquis, L.A.1
Souret, F.F.2
Green, P.J.3
-
65
-
-
84862232060
-
Apple miRNAs and tasiRNAs with novel regulatory networks
-
Xia R, Zhu H, An YQ, Beers EP, Liu Z Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biol 2012, 13:R47.
-
(2012)
Genome Biol
, vol.13
-
-
Xia, R.1
Zhu, H.2
An, Y.Q.3
Beers, E.P.4
Liu, Z.5
-
66
-
-
84865097020
-
Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
-
Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs. BMC Plant Biol 2012, 12:149.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 149
-
-
Zhu, H.1
Xia, R.2
Zhao, B.3
An, Y.Q.4
Dardick, C.D.5
Callahan, A.M.6
Liu, Z.7
-
67
-
-
84883166485
-
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks
-
Fei Q, Xia R, Meyers BC Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks. Plant Cell 2013, 25:2400-2415.
-
(2013)
Plant Cell
, vol.25
, pp. 2400-2415
-
-
Fei, Q.1
Xia, R.2
Meyers, B.C.3
-
68
-
-
77952821615
-
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice
-
Jiao Y, Wang Y, Xue D, Wang J, Yan M, Liu G, Dong G, Zeng D, Lu Z, Zhu X, Quian Q, Li J Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet 2010, 42:541-544.
-
(2010)
Nat Genet
, vol.42
, pp. 541-544
-
-
Jiao, Y.1
Wang, Y.2
Xue, D.3
Wang, J.4
Yan, M.5
Liu, G.6
Dong, G.7
Zeng, D.8
Lu, Z.9
Zhu, X.10
Quian, Q.11
Li, J.12
-
69
-
-
77952885074
-
OsSPL14 promotes panicle branching and higher grain productivity in rice
-
Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet 2010, 42:545-549.
-
(2010)
Nat Genet
, vol.42
, pp. 545-549
-
-
Miura, K.1
Ikeda, M.2
Matsubara, A.3
Song, X.J.4
Ito, M.5
Asano, K.6
Matsuoka, M.7
Kitano, H.8
Ashikari, M.9
-
70
-
-
33748769519
-
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice
-
Xie K, Wu C, Xiong L Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. Plant Physiol 2006, 142:280-293.
-
(2006)
Plant Physiol
, vol.142
, pp. 280-293
-
-
Xie, K.1
Wu, C.2
Xiong, L.3
-
71
-
-
0038076109
-
Negative feedback regulation of dicer-like1 in Arabidopsis by microRNA-guided mRNA degradation
-
Xie Z, Kasschau KD, Carrington JC Negative feedback regulation of dicer-like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 2003, 13:784-789.
-
(2003)
Curr Biol
, vol.13
, pp. 784-789
-
-
Xie, Z.1
Kasschau, K.D.2
Carrington, J.C.3
-
72
-
-
43449118038
-
Evolution of plant microRNAs and their targets
-
Axtell MJ, Bowman JL Evolution of plant microRNAs and their targets. Trends Plant Sci 2008, 13:343-349.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 343-349
-
-
Axtell, M.J.1
Bowman, J.L.2
-
73
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006, 20:3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
74
-
-
39549115890
-
Cloning and characterization of microRNAs from wheat (Triticum aestivum L)
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biol 2007, 8:R96.
-
(2007)
Genome Biol
, vol.8
, pp. R96
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
Zhu, J.K.6
Sun, Q.7
-
75
-
-
79951958731
-
Discovery of barley miRNAs through deep sequencing of short reads
-
Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U Discovery of barley miRNAs through deep sequencing of short reads. BMC Genomics 2011, 12:129.
-
(2011)
BMC Genomics
, vol.12
, pp. 129
-
-
Schreiber, A.W.1
Shi, B.J.2
Huang, C.Y.3
Langridge, P.4
Baumann, U.5
-
76
-
-
81955164851
-
Identification and temporal expression analysis of conserved and novel microRNAs in sorghum
-
Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R Identification and temporal expression analysis of conserved and novel microRNAs in sorghum. Genomics 2011, 98:460-468.
-
(2011)
Genomics
, vol.98
, pp. 460-468
-
-
Zhang, L.1
Zheng, Y.2
Jagadeeswaran, G.3
Li, Y.4
Gowdu, K.5
Sunkar, R.6
-
77
-
-
34447319406
-
Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA
-
Duan R, Pak C, Jin P Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Hum Mol Genet 2007, 16:1124-1131.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 1124-1131
-
-
Duan, R.1
Pak, C.2
Jin, P.3
-
78
-
-
69049108754
-
SNPs in human miRNA genes affect biogenesis and function
-
Sun G, Yan J, Noltner K, Feng J, Li H, Sarkis DA, Sommer SS, Rossi JJ SNPs in human miRNA genes affect biogenesis and function. RNA 2009, 15:1640-1651.
-
(2009)
RNA
, vol.15
, pp. 1640-1651
-
-
Sun, G.1
Yan, J.2
Noltner, K.3
Feng, J.4
Li, H.5
Sarkis, D.A.6
Sommer, S.S.7
Rossi, J.J.8
-
79
-
-
77952918274
-
Genetic variation in microRNA networks: the implications for cancer research
-
Ryan BM, Robles AI, Harris CC Genetic variation in microRNA networks: the implications for cancer research. Nat Rev Cancer 2010, 10:389-402.
-
(2010)
Nat Rev Cancer
, vol.10
, pp. 389-402
-
-
Ryan, B.M.1
Robles, A.I.2
Harris, C.C.3
-
80
-
-
84856227256
-
Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs
-
Todesco M, Balasubramanian S, Cao J, Ott F, Sureshkumar S, Schneeberger K, Meyer RC, Altmann T, Weigel D Natural variation in biogenesis efficiency of individual Arabidopsis thaliana microRNAs. Curr Biol 2012, 22:166-170.
-
(2012)
Curr Biol
, vol.22
, pp. 166-170
-
-
Todesco, M.1
Balasubramanian, S.2
Cao, J.3
Ott, F.4
Sureshkumar, S.5
Schneeberger, K.6
Meyer, R.C.7
Altmann, T.8
Weigel, D.9
-
81
-
-
79960917261
-
Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism
-
Pena-Castro JM, van Zanten M, Lee SC, Patel MR, Voesenek LA, Fukao T, Bailey-Serres J Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism. Plant J 2011, 67:434-446.
-
(2011)
Plant J
, vol.67
, pp. 434-446
-
-
Pena-Castro, J.M.1
van Zanten, M.2
Lee, S.C.3
Patel, M.R.4
Voesenek, L.A.5
Fukao, T.6
Bailey-Serres, J.7
-
82
-
-
34047174556
-
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
-
Chuck G, Cigan AM, Saeteurn K, Hake S The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA. Nat Genet 2007, 39:544-549.
-
(2007)
Nat Genet
, vol.39
, pp. 544-549
-
-
Chuck, G.1
Cigan, A.M.2
Saeteurn, K.3
Hake, S.4
-
83
-
-
80054819864
-
Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass
-
Chuck GS, Tobias C, Sun L, Kraemer F, Li C, Dibble D, Arora R, Bragg JN, Vogel JP, Singh S, Simmons BA, Pauly M, Hake S Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass. Proc Natl Acad Sci USA 2011, 108:17550-17555.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17550-17555
-
-
Chuck, G.S.1
Tobias, C.2
Sun, L.3
Kraemer, F.4
Li, C.5
Dibble, D.6
Arora, R.7
Bragg, J.N.8
Vogel, J.P.9
Singh, S.10
Simmons, B.A.11
Pauly, M.12
Hake, S.13
-
84
-
-
84862800354
-
Overexpression of miR156 in switchgrass (Panicum virgatum L) results in various morphological alterations and leads to improved biomass production
-
Fu C, Sunkar R, Zhou C, Shen H, Zhang JY, Matts J, Wolf J, Mann DG, Stewart CN, Tang Y, Wang ZY Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnol J 2012, 10:443-452.
-
(2012)
Plant Biotechnol J
, vol.10
, pp. 443-452
-
-
Fu, C.1
Sunkar, R.2
Zhou, C.3
Shen, H.4
Zhang, J.Y.5
Matts, J.6
Wolf, J.7
Mann, D.G.8
Stewart, C.N.9
Tang, Y.10
Wang, Z.Y.11
-
85
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D Specific effects of microRNAs on the plant transcriptome. Dev Cell 2005, 8:517-527.
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
86
-
-
34548687914
-
Construction of small RNA cDNA libraries for deep sequencing
-
Lu C, Meyers BC, Green PJ Construction of small RNA cDNA libraries for deep sequencing. Methods 2007, 43:110-117.
-
(2007)
Methods
, vol.43
, pp. 110-117
-
-
Lu, C.1
Meyers, B.C.2
Green, P.J.3
-
87
-
-
84923897806
-
-
Brachypodium genome 8X assembly
-
Brachypodium genome 8X assembly. [ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Bdistachyon/]
-
-
-
-
88
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
89
-
-
84934438960
-
UNAFold: software for nucleic acid folding and hybridization
-
Markham NR, Zuker M UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 2008, 453:3-31.
-
(2008)
Methods Mol Biol
, vol.453
, pp. 3-31
-
-
Markham, N.R.1
Zuker, M.2
-
90
-
-
34249102218
-
A rapid, quantitative assay for direct detection of microRNAs and other small RNAs using splinted ligation
-
Maroney PA, Chamnongpol S, Souret F, Nilsen TW A rapid, quantitative assay for direct detection of microRNAs and other small RNAs using splinted ligation. RNA 2007, 13:930-936.
-
(2007)
RNA
, vol.13
, pp. 930-936
-
-
Maroney, P.A.1
Chamnongpol, S.2
Souret, F.3
Nilsen, T.W.4
-
91
-
-
39449106892
-
Direct detection of small RNAs using splinted ligation
-
Maroney PA, Chamnongpol S, Souret F, Nilsen TW Direct detection of small RNAs using splinted ligation. Nat Protoc 2008, 3:279-287.
-
(2008)
Nat Protoc
, vol.3
, pp. 279-287
-
-
Maroney, P.A.1
Chamnongpol, S.2
Souret, F.3
Nilsen, T.W.4
-
92
-
-
84869998333
-
Methods for validation of miRNA sequence variants and the cleavage of their targets
-
Jeong DH, Green PJ Methods for validation of miRNA sequence variants and the cleavage of their targets. Methods 2012, 58:135-143.
-
(2012)
Methods
, vol.58
, pp. 135-143
-
-
Jeong, D.H.1
Green, P.J.2
-
94
-
-
63849207321
-
Construction of parallel analysis of RNA ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
-
German MA, Luo S, Schroth G, Meyers BC, Green PJ Construction of parallel analysis of RNA ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protocols 2009, 4:356-362.
-
(2009)
Nat Protocols
, vol.4
, pp. 356-362
-
-
German, M.A.1
Luo, S.2
Schroth, G.3
Meyers, B.C.4
Green, P.J.5
-
95
-
-
84923897805
-
-
CleaveLand v2.0
-
CleaveLand v2.0. [http://axtell-lab-psu.weebly.com/cleaveland.html]
-
-
-
-
96
-
-
84923897804
-
-
Brachypodium coding sequence CDSv1.2
-
Brachypodium coding sequence CDSv1.2. [http://compbio.cs.toronto.edu/shrimp/]
-
-
-
-
97
-
-
58049220318
-
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
-
Addo-Quaye C, Miller W, Axtell MJ CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics 2009, 25:130-131.
-
(2009)
Bioinformatics
, vol.25
, pp. 130-131
-
-
Addo-Quaye, C.1
Miller, W.2
Axtell, M.J.3
-
98
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie Z, Gustafson AM, Sung GH, Spatafora JW, Carrington JC Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 2004, 36:1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
99
-
-
84923897803
-
-
psRNATarget
-
psRNATarget. [http://plantgrn.noble.org/psRNATarget/]
-
-
-
-
100
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
Dai X, Zhao PX psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 2011, 39:W155-W159.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W155-W159
-
-
Dai, X.1
Zhao, P.X.2
-
101
-
-
84923897802
-
-
Brachypodium small RNA data
-
Brachypodium small RNA data. [http://mpss.udel.edu/brachy_sRNA2]
-
-
-
-
102
-
-
84923897801
-
-
Brachypodium PARE data
-
Brachypodium PARE data. [http://mpss.udel.edu/brachy_pare2]
-
-
-
|