메뉴 건너뛰기




Volumn 21, Issue 10, 2009, Pages 3119-3132

Phenotypic plasticity of adventitious rooting in arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

EID: 72049120376     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.108.064758     Document Type: Article
Times cited : (492)

References (36)
  • 1
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • DOI 10.1016/j.cell.2005.04.004
    • Allen, E., Xie, Z., Gustafson, A.M., and Carrington, J.C. (2005). MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121:207-221. (Pubitemid 40546389)
    • (2005) Cell , vol.121 , Issue.2 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 2
    • 0032447801 scopus 로고    scopus 로고
    • Floral dip: A simplified method for Agrobacterium-medlated transformation of Arabidopsis thaliana
    • Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-medlated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
    • (1998) Plant J. , vol.16 , pp. 735-743
    • Clough, S.J.1    Bent, A.F.2
  • 3
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis
    • DOI 10.1104/pp.105.063743
    • Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K., and Scheible, W.R. (2005). Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17. (Pubitemid 43951587)
    • (2005) Plant Physiology , vol.139 , Issue.1 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.-R.5
  • 5
    • 23944483216 scopus 로고    scopus 로고
    • Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
    • Gasciolli, V., Mallory, A.C., Bartel, D.P., and Vaucheret, H. (2005). Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr. Biol. 15: 1494-1500.
    • (2005) Curr. Biol. , vol.15 , pp. 1494-1500
    • Gasciolli, V.1    Mallory, A.C.2    Bartel, D.P.3    Vaucheret, H.4
  • 7
    • 34247179712 scopus 로고    scopus 로고
    • Plant biology: Sticking with auxin
    • Guilfoyle, T. (2007). Plant biology: Sticking with auxin. Nature 446: 621-622.
    • (2007) Nature , vol.446 , pp. 621-622
    • Guilfoyle, T.1
  • 10
    • 27744565583 scopus 로고    scopus 로고
    • Crown rootless1, which is essential for crown root formation in rice, is a target of an Auxin Response Factor in auxin signaling
    • DOI 10.1105/tpc.105.030981
    • Inukai, Y., Sakamoto, T., Ueguchi-Tanaka, M., Shibata, Y., Gomi, K., Umemura, I., Hasegawa, Y., Ashikari, M., Kitano, H., and Matsuoka, M. (2005). Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Plant Cell 17: 1387-1396. (Pubitemid 43138192)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1387-1396
    • Inukai, Y.1    Sakamoto, T.2    Ueguchi-Tanaka, M.3    Shibata, Y.4    Gomi, K.5    Umemura, I.6    Hasegawa, Y.7    Ashikari, M.8    Kitano, H.9    Matsuoka, M.10
  • 11
    • 0036581417 scopus 로고    scopus 로고
    • GATEWAY vectors for Agrobacterium-mediated plant transformation
    • Karimi, M., Inze, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193-195.
    • (2002) Trends Plant Sci. , vol.7 , pp. 193-195
    • Karimi, M.1    Inze, D.2    Depicker, A.3
  • 12
    • 25444475785 scopus 로고    scopus 로고
    • A standard curve based method for relative real time PCR data processing
    • DOI 10.1186/1471-2105-6-62
    • Larionov, A., Krause, A., and Miller, W. (2005). A standard curve based method for relative real time PCR data processing. BMC Bioinformatics 6: 62. (Pubitemid 41357953)
    • (2005) BMC Bioinformatics , vol.6 , pp. 62
    • Larionov, A.1    Krause, A.2    Miller, W.R.3
  • 13
    • 22044453231 scopus 로고    scopus 로고
    • ARL1, a LOB-domain protein required for adventitious root formation in rice
    • Liu, H.J., Wang, S.F., Yu, X.B., Yu, J., He, X.W., Zhang, S.L., Shou, H.X., and Wu, P. (2005). ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J. 43: 47-56.
    • (2005) Plant J. , vol.43 , pp. 47-56
    • Liu, H.J.1    Wang, S.F.2    Yu, X.B.3    Yu, J.4    He, X.W.5    Zhang, S.L.6    Shou, H.X.7    Wu, P.8
  • 14
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes
    • Mallory, A.C., Bartel, D.P., and Bartel, B. (2005). MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 17: 1360-1375.
    • (2005) Plant Cell , vol.17 , pp. 1360-1375
    • Mallory, A.C.1    Bartel, D.P.2    Bartel, B.3
  • 15
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory, A.C., and Vaucheret, H. (2006). Functions of microRNAs and related small RNAs in plants. Nat. Genet. 38(Suppl): S31-S36.
    • (2006) Nat. Genet. , vol.38 , Issue.SUPPL.
    • Mallory, A.C.1    Vaucheret, H.2
  • 18
    • 33745623128 scopus 로고    scopus 로고
    • Post-transcriptional regulation of microRNA expression
    • Obernosterer, G., Leuschner, P.J., Alenius, M., and Martinez, J. (2006). Post-transcriptional regulation of microRNA expression. RNA 12: 1161-1167.
    • (2006) RNA , vol.12 , pp. 1161-1167
    • Obernosterer, G.1    Leuschner, P.J.2    Alenius, M.3    Martinez, J.4
  • 19
    • 20044394137 scopus 로고    scopus 로고
    • Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: Unique and overlapping functions of ARF7 and ARF19
    • Okushima, Y., et al. (2005). Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: Unique and overlapping functions of ARF7 and ARF19. Plant Cell 17: 444-463.
    • (2005) Plant Cell , vol.17 , pp. 444-463
    • Okushima, Y.1
  • 20
    • 51749093103 scopus 로고    scopus 로고
    • Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
    • Ramachandran, V., and Chen, X. (2008). Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321:1490-1492.
    • (2008) Science , vol.321 , pp. 1490-1492
    • Ramachandran, V.1    Chen, X.2
  • 22
    • 66149170070 scopus 로고    scopus 로고
    • Real-time quantitative RT-PCR: Design, calculations, and statistics
    • Rieu, I., and Powers, S.J. (2009). Real-time quantitative RT-PCR: Design, calculations, and statistics. Plant Cell 21: 1031-1033.
    • (2009) Plant Cell , vol.21 , pp. 1031-1033
    • Rieu, I.1    Powers, S.J.2
  • 23
    • 30344456035 scopus 로고    scopus 로고
    • Facile means for quantifying microRNA expression by real-time PCR
    • Shi, R., and Chiang, V.L. (2005). Facile means for quantifying microRNA expression by real-time PCR. Biotechniques 39: 519-525.
    • (2005) Biotechniques , vol.39 , pp. 519-525
    • Shi, R.1    Chiang, V.L.2
  • 25
    • 33645808277 scopus 로고    scopus 로고
    • Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development
    • DOI 10.1104/pp.105.067868
    • Sorin, C., Negroni, L., Balliau, T., Corti, H., Jacquemot, M.P., Davanture, M., Sandberg, G., Zivy, M., and Bellini, C. (2006). Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development. Plant Physiol. 140: 349-364. (Pubitemid 43956327)
    • (2006) Plant Physiology , vol.140 , Issue.1 , pp. 349-364
    • Sorin, C.1    Negroni, L.2    Balliau, T.3    Corti, H.4    Jacquemot, M.-P.5    Davanture, M.6    Sandberg, G.7    Zivy, M.8    Bellini, C.9
  • 26
    • 33747334621 scopus 로고    scopus 로고
    • Extensive post-transcriptional regulation of microRNAs and its implications for cancer
    • DOI 10.1101/gad.1444406
    • Thomson, J.M., Newman, M., Parker, J.S., Morin-Kensicki, E.M., Wright, T., and Hammond, S.M. (2006). Extensive post-transcriptional regulation of microRNAs and its implications for cancer. Genes Dev. 20: 2202-2207. (Pubitemid 44244521)
    • (2006) Genes and Development , vol.20 , Issue.16 , pp. 2202-2207
    • Thomson, J.M.1    Newman, M.2    Parker, J.S.3    Morin-Kensicki, E.M.4    Wright, T.5    Hammond, S.M.6
  • 27
    • 7044228135 scopus 로고    scopus 로고
    • Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition
    • DOI 10.1111/j.1365-313X.2004.02220.x
    • Tian, C.E., Muto, H., Higuchi, K., Matamura, T., Tatematsu, K., Koshiba, T., and Yamamoto, K.T. (2004). Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J. 40: 333-343. (Pubitemid 39415615)
    • (2004) Plant Journal , vol.40 , Issue.3 , pp. 333-343
    • Tian, C.-E.1    Muto, H.2    Higuchi, K.3    Matamura, T.4    Tatematsu, K.5    Koshiba, T.6    Yamamoto, K.T.7
  • 28
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A., and Speleman, F. (2002). Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3: RESEARCH0034.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 29
    • 40849108663 scopus 로고    scopus 로고
    • Selective blockade of microRNA processing by Lin28
    • Viswanathan, S.R., Daley, G.Q., and Gregory, R.I. (2008). Selective blockade of microRNA processing by Lin28. Science 320: 97-100.
    • (2008) Science , vol.320 , pp. 97-100
    • Viswanathan, S.R.1    Daley, G.Q.2    Gregory, R.I.3
  • 30
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • Voinnet, O. (2009). Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
    • (2009) Cell , vol.136 , pp. 669-687
    • Voinnet, O.1
  • 31
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis
    • Wang, J.W., Wang, L.J., Mao, Y.B., Cai, W.J., Xue, H.W., and Chen, X.Y. (2005). Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17: 2204-2216.
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3    Cai, W.J.4    Xue, H.W.5    Chen, X.Y.6
  • 32
    • 22144433672 scopus 로고    scopus 로고
    • A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes
    • Williams, L., Carles, C.C., Osmont, K.S., and Fletcher, J.C. (2005). A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc. Natl. Acad. Sci. USA 102: 9703-9708.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 9703-9708
    • Williams, L.1    Carles, C.C.2    Osmont, K.S.3    Fletcher, J.C.4
  • 34
    • 33751516753 scopus 로고    scopus 로고
    • Arabidopis microRNA 167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction
    • DOI 10.1242/dev.02602
    • Wu, M.F., Tian, Q., and Reed, J.W. (2006). Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 133: 4211-4218. (Pubitemid 44830665)
    • (2006) Development , vol.133 , Issue.21 , pp. 4211-4218
    • Wu, M.-F.1    Tian, Q.2    Reed, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.