메뉴 건너뛰기




Volumn 12, Issue , 2012, Pages

Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); MANIHOT ESCULENTA; XANTHOMONAS AXONOPODIS; XANTHOMONAS AXONOPODIS PV. MANIHOTIS;

EID: 84860228070     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-29     Document Type: Article
Times cited : (63)

References (63)
  • 1
    • 32944479048 scopus 로고    scopus 로고
    • Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
    • 10.1016/j.cell.2006.02.008, 16497589
    • Chisholm ST, Coaker G, Day B, Staskawicz BJ. Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response. Cell 2006, 124:803-814. 10.1016/j.cell.2006.02.008, 16497589.
    • (2006) Cell , vol.124 , pp. 803-814
    • Chisholm, S.T.1    Coaker, G.2    Day, B.3    Staskawicz, B.J.4
  • 2
    • 33645525893 scopus 로고    scopus 로고
    • MicroRNAS and their regulatory roles in plants
    • 10.1146/annurev.arplant.57.032905.105218, 16669754
    • Jones-Rhoades MW, Bartel DP, Bartel B. MicroRNAS and their regulatory roles in plants. Annu Rev Plant Biol 2006, 57:19-53. 10.1146/annurev.arplant.57.032905.105218, 16669754.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 19-53
    • Jones-Rhoades, M.W.1    Bartel, D.P.2    Bartel, B.3
  • 4
    • 49449118943 scopus 로고    scopus 로고
    • Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
    • 10.1038/nbt1417, 18542052
    • German MA, Pillay M, Jeong DH, et al. Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends. Nat Biotechnol 2008, 26:941-946. 10.1038/nbt1417, 18542052.
    • (2008) Nat Biotechnol , vol.26 , pp. 941-946
    • German, M.A.1    Pillay, M.2    Jeong, D.H.3
  • 5
    • 77955134510 scopus 로고    scopus 로고
    • Expression of microRNAs and its regulation in plants
    • 10.1016/j.semcdb.2010.03.012, 2939293, 20403450
    • Xie Z, Khanna K, Ruan S. Expression of microRNAs and its regulation in plants. Seminars in Cell and Developmental Biology 2010, 21(8):790-7. 10.1016/j.semcdb.2010.03.012, 2939293, 20403450.
    • (2010) Seminars in Cell and Developmental Biology , vol.21 , Issue.8 , pp. 790-797
    • Xie, Z.1    Khanna, K.2    Ruan, S.3
  • 6
    • 74049103591 scopus 로고    scopus 로고
    • MicroRNA promoter analysis
    • 10.1007/978-1-60327-005-2_11, 19802595
    • Megraw M, Hatzigeorgiou AG. MicroRNA promoter analysis. Methods Mol Biol 2010, 592:149-161. 10.1007/978-1-60327-005-2_11, 19802595.
    • (2010) Methods Mol Biol , vol.592 , pp. 149-161
    • Megraw, M.1    Hatzigeorgiou, A.G.2
  • 7
    • 73949114608 scopus 로고    scopus 로고
    • Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant
    • 10.1007/s00425-009-0994-3, 19655164
    • Meng Y, Huang F, Shi Q, et al. Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. Planta 2009, 230:883-898. 10.1007/s00425-009-0994-3, 19655164.
    • (2009) Planta , vol.230 , pp. 883-898
    • Meng, Y.1    Huang, F.2    Shi, Q.3
  • 8
    • 77649190941 scopus 로고    scopus 로고
    • Identification of iron-deficiency responsive microRNA genes and cis-elements in Arabidopsis
    • 10.1016/j.plaphy.2009.12.008, 20097571
    • Kong WW, Yang ZM. Identification of iron-deficiency responsive microRNA genes and cis-elements in Arabidopsis. Plant Physiol Biochem 2010, 48:153-159. 10.1016/j.plaphy.2009.12.008, 20097571.
    • (2010) Plant Physiol Biochem , vol.48 , pp. 153-159
    • Kong, W.W.1    Yang, Z.M.2
  • 9
    • 58149279263 scopus 로고    scopus 로고
    • Genomic analysis of rice microRNA promoters and clusters
    • 10.1016/j.gene.2008.11.016, 19073239
    • Cui X, Xu SM, Mu DS, Yang ZM. Genomic analysis of rice microRNA promoters and clusters. Gene 2009, 431:61-66. 10.1016/j.gene.2008.11.016, 19073239.
    • (2009) Gene , vol.431 , pp. 61-66
    • Cui, X.1    Xu, S.M.2    Mu, D.S.3    Yang, Z.M.4
  • 10
    • 55049139974 scopus 로고    scopus 로고
    • The role of microRNAs and other endogenous small RNAs in plant stress responses
    • Shukla LI, Chinnusamy V, Sunkar R. The role of microRNAs and other endogenous small RNAs in plant stress responses. BBA - Gene Regulatory Mechanisms 2008, 1779:743-748.
    • (2008) BBA - Gene Regulatory Mechanisms , vol.1779 , pp. 743-748
    • Shukla, L.I.1    Chinnusamy, V.2    Sunkar, R.3
  • 11
    • 33645967758 scopus 로고    scopus 로고
    • A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
    • 10.1126/science.1126088, 16627744
    • Navarro L, Dunoyer P, Jay F, et al. A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 2006, 312:436-439. 10.1126/science.1126088, 16627744.
    • (2006) Science , vol.312 , pp. 436-439
    • Navarro, L.1    Dunoyer, P.2    Jay, F.3
  • 12
    • 49649106693 scopus 로고    scopus 로고
    • Suppression of the microRNA pathway by bacterial effector proteins
    • 10.1126/science.1159505, 2570098, 18703740
    • Navarro L, Jay F, Nomura K, He SY, Voinnet O. Suppression of the microRNA pathway by bacterial effector proteins. Science 2008, 321:964-967. 10.1126/science.1159505, 2570098, 18703740.
    • (2008) Science , vol.321 , pp. 964-967
    • Navarro, L.1    Jay, F.2    Nomura, K.3    He, S.Y.4    Voinnet, O.5
  • 13
    • 78650517556 scopus 로고    scopus 로고
    • Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks
    • 3005105, 21153682
    • Zhang W, Gao S, Zhou X, et al. Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks. Plant Mol Biol 2010, 75:93-105. 3005105, 21153682.
    • (2010) Plant Mol Biol , vol.75 , pp. 93-105
    • Zhang, W.1    Gao, S.2    Zhou, X.3
  • 14
    • 77950541210 scopus 로고    scopus 로고
    • Identification of MicroRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity
    • 10.1104/pp.109.151803, 2850012, 20164210
    • Li Y, Zhang QQ, Zhang J, et al. Identification of MicroRNAs involved in pathogen-associated molecular pattern-triggered plant innate immunity. Plant Physiol 2010, 152:2222. 10.1104/pp.109.151803, 2850012, 20164210.
    • (2010) Plant Physiol , vol.152 , pp. 2222
    • Li, Y.1    Zhang, Q.Q.2    Zhang, J.3
  • 15
    • 34547115664 scopus 로고    scopus 로고
    • High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    • 10.1371/journal.pone.0000219, 1790633, 17299599
    • Fahlgren N, Howell MD, Kasschau KD, et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One 2007, 2:e219. 10.1371/journal.pone.0000219, 1790633, 17299599.
    • (2007) PLoS One , vol.2
    • Fahlgren, N.1    Howell, M.D.2    Kasschau, K.D.3
  • 16
    • 14744273154 scopus 로고    scopus 로고
    • Cassava biology and physiology
    • 10.1007/s11103-005-2270-7, 15669146
    • El-Sharkawy MA. Cassava biology and physiology. Plant Mol Biol 2004, 56:481-501. 10.1007/s11103-005-2270-7, 15669146.
    • (2004) Plant Mol Biol , vol.56 , pp. 481-501
    • El-Sharkawy, M.A.1
  • 17
    • 71549115166 scopus 로고    scopus 로고
    • An evaluation of cassava, sweet potato and field corn as potential carbohydrate sources for bioethanol production in Alabama and Maryland
    • Ziska LH, Runion GB, Tomecek M, et al. An evaluation of cassava, sweet potato and field corn as potential carbohydrate sources for bioethanol production in Alabama and Maryland. Biomass Bioenergy 2009, 33:1503-1508.
    • (2009) Biomass Bioenergy , vol.33 , pp. 1503-1508
    • Ziska, L.H.1    Runion, G.B.2    Tomecek, M.3
  • 18
    • 78249285275 scopus 로고    scopus 로고
    • Cassava: an appraisal of its phytochemistry and its biotechnological prospects
    • 10.1016/j.phytochem.2010.09.001, 20943239
    • Blagbrough IS, Bayoumi SAL, Rowan MG, Beeching JR. Cassava: an appraisal of its phytochemistry and its biotechnological prospects. Phytochemistry 2010, 71:1940-1951. 10.1016/j.phytochem.2010.09.001, 20943239.
    • (2010) Phytochemistry , vol.71 , pp. 1940-1951
    • Blagbrough, I.S.1    Bayoumi, S.A.L.2    Rowan, M.G.3    Beeching, J.R.4
  • 20
    • 33645738249 scopus 로고    scopus 로고
    • Climate change and food security. Philosophical transactions of the royal society of London-series B
    • 10.1098/rstb.2005.1745, 1569578, 16433099
    • Gregory PJ, Ingram JSI, Brklacich M. Climate change and food security. Philosophical transactions of the royal society of London-series B. Biological Sciences 2005, 360:2139-2148. 10.1098/rstb.2005.1745, 1569578, 16433099.
    • (2005) Biological Sciences , vol.360 , pp. 2139-2148
    • Gregory, P.J.1    Ingram, J.S.I.2    Brklacich, M.3
  • 21
    • 69049097144 scopus 로고    scopus 로고
    • MicroPC (microPC): a comprehensive resource for predicting and comparing plant microRNAs
    • 10.1186/1471-2164-10-366, 2907689, 19660144
    • Mhuantong W, Wichadakul D. MicroPC (microPC): a comprehensive resource for predicting and comparing plant microRNAs. BMC Genomics 2009, 10:366. 10.1186/1471-2164-10-366, 2907689, 19660144.
    • (2009) BMC Genomics , vol.10 , pp. 366
    • Mhuantong, W.1    Wichadakul, D.2
  • 22
    • 75549083571 scopus 로고    scopus 로고
    • PMRD: plant microRNA database
    • 10.1093/nar/gkp818, 2808885, 19808935
    • Zhang Z, Yu J, Li D, et al. PMRD: plant microRNA database. Nucleic Acids Res 2010, 38:D806-D813. 10.1093/nar/gkp818, 2808885, 19808935.
    • (2010) Nucleic Acids Res , vol.38
    • Zhang, Z.1    Yu, J.2    Li, D.3
  • 23
    • 79954455567 scopus 로고    scopus 로고
    • Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
    • Amiteye S, Corral JM, Sharbel TF. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement. J Biotechnol 2011, 10:2562-2573.
    • (2011) J Biotechnol , vol.10 , pp. 2562-2573
    • Amiteye, S.1    Corral, J.M.2    Sharbel, T.F.3
  • 24
    • 77950360655 scopus 로고    scopus 로고
    • Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    • Zeng C, Wang W, Zheng Y, et al. Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants. Database 2009, 38:981-995.
    • (2009) Database , vol.38 , pp. 981-995
    • Zeng, C.1    Wang, W.2    Zheng, Y.3
  • 25
    • 77949621355 scopus 로고    scopus 로고
    • MiRBase: microRNA sequences and annotation
    • Unit 12.9. Chapter 12
    • Griffiths-Jones S. miRBase: microRNA sequences and annotation. Wiley Online Library 2010, (Chapter 12):Unit 12.9.1-10.
    • (2010) Wiley Online Library , pp. 1-10
    • Griffiths-Jones, S.1
  • 26
    • 84860241728 scopus 로고    scopus 로고
    • Cassava Genome Project 2010
    • Cassava Genome Project 2010 Cassava Genome Project 2010 Cassava Genome Project 2010., http://www.phytozome.net/cassava
    • Cassava Genome Project 2010
  • 27
    • 75549083571 scopus 로고    scopus 로고
    • PMRD: plant microRNA database
    • 10.1093/nar/gkp818, 2808885, 19808935
    • Zhang Z, Yu J, Li D, et al. PMRD: plant microRNA database. Nucleic Acids Res 2010, 38:D806-D813. 10.1093/nar/gkp818, 2808885, 19808935.
    • (2010) Nucleic Acids Res , vol.38
    • Zhang, Z.1    Yu, J.2    Li, D.3
  • 28
    • 52949088691 scopus 로고    scopus 로고
    • A toolkit for analysing large-scale plant small RNA datasets
    • 10.1093/bioinformatics/btn428, 18713789
    • Moxon S, Schwach F, Dalmay T, et al. A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 2008, 24:2252-2253. 10.1093/bioinformatics/btn428, 18713789.
    • (2008) Bioinformatics , vol.24 , pp. 2252-2253
    • Moxon, S.1    Schwach, F.2    Dalmay, T.3
  • 29
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • 10.1016/j.molcel.2004.05.027, 15200956
    • Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004, 14:787-799. 10.1016/j.molcel.2004.05.027, 15200956.
    • (2004) Mol Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 30
    • 34547596338 scopus 로고    scopus 로고
    • MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features
    • 10.1093/nar/gkm368, 1933124, 17553836
    • Jiang P, Wu H, Wang W, et al. MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res 2007, 35:W339-W344. 10.1093/nar/gkm368, 1933124, 17553836.
    • (2007) Nucleic Acids Res , vol.35
    • Jiang, P.1    Wu, H.2    Wang, W.3
  • 31
    • 74049164557 scopus 로고    scopus 로고
    • Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    • 10.1186/gb-2009-10-7-r78, 2728532, 19615057
    • Chen X, Li Q, Wang J, et al. Identification and characterization of novel amphioxus microRNAs by Solexa sequencing. Genome Biol 2009, 10:R78. 10.1186/gb-2009-10-7-r78, 2728532, 19615057.
    • (2009) Genome Biol , vol.10
    • Chen, X.1    Li, Q.2    Wang, J.3
  • 33
    • 0842321501 scopus 로고    scopus 로고
    • MicroRNA targets in Drosophila
    • 10.1186/gb-2003-5-1-r1, 395733, 14709173
    • Enright AJ, John B, Gaul U, et al. MicroRNA targets in Drosophila. Genome Biol 2003, 5:R1. 10.1186/gb-2003-5-1-r1, 395733, 14709173.
    • (2003) Genome Biol , vol.5
    • Enright, A.J.1    John, B.2    Gaul, U.3
  • 34
    • 47049120791 scopus 로고    scopus 로고
    • MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis
    • 10.1074/jbc.M801406200, 3259626, 18408011
    • Abdel-Ghany SE, Pilon M. MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis. J Biol Chem 2008, 283:15932-15945. 10.1074/jbc.M801406200, 3259626, 18408011.
    • (2008) J Biol Chem , vol.283 , pp. 15932-15945
    • Abdel-Ghany, S.E.1    Pilon, M.2
  • 36
    • 78149375686 scopus 로고    scopus 로고
    • Conserved Molecular Components for Pollen Tube Reception and Fungal Invasion
    • 10.1126/science.1195211, 21071669
    • Kessler SA, Shimosato-Asano H, Keinath NF, et al. Conserved Molecular Components for Pollen Tube Reception and Fungal Invasion. Science 2010, 330:968-971. 10.1126/science.1195211, 21071669.
    • (2010) Science , vol.330 , pp. 968-971
    • Kessler, S.A.1    Shimosato-Asano, H.2    Keinath, N.F.3
  • 37
    • 34547818282 scopus 로고    scopus 로고
    • The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception
    • 10.1126/science.1143562, 17673660
    • Escobar-Restrepo J-M, Huck N, Kessler S, et al. The FERONIA receptor-like kinase mediates male-female interactions during pollen tube reception. Science 2007, 317:656-660. 10.1126/science.1143562, 17673660.
    • (2007) Science , vol.317 , pp. 656-660
    • Escobar-Restrepo, J.-M.1    Huck, N.2    Kessler, S.3
  • 38
    • 60149090481 scopus 로고    scopus 로고
    • Criteria for annotation of plant MicroRNAs
    • 10.1105/tpc.108.064311, 2630443, 19074682
    • Meyers BC, Axtell MJ, Bartel B, et al. Criteria for annotation of plant MicroRNAs. Plant Cell 2008, 20:3186-3190. 10.1105/tpc.108.064311, 2630443, 19074682.
    • (2008) Plant Cell , vol.20 , pp. 3186-3190
    • Meyers, B.C.1    Axtell, M.J.2    Bartel, B.3
  • 39
    • 66349135632 scopus 로고    scopus 로고
    • Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis
    • 10.1371/journal.pgen.1000457, 2664332, 19381263
    • Luo QJ, Samanta MP, Köksal F, et al. Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis. PLoS Genet 2009, 5:e1000457. 10.1371/journal.pgen.1000457, 2664332, 19381263.
    • (2009) PLoS Genet , vol.5
    • Luo, Q.J.1    Samanta, M.P.2    Köksal, F.3
  • 40
    • 33748132234 scopus 로고    scopus 로고
    • MicroRNA promoter element discovery in Arabidopsis
    • 10.1261/rna.130506, 1557699, 16888323
    • Megraw M, Baev V, Rusinov V, et al. MicroRNA promoter element discovery in Arabidopsis. RNA 2006, 12(9):1612-1619. 10.1261/rna.130506, 1557699, 16888323.
    • (2006) RNA , vol.12 , Issue.9 , pp. 1612-1619
    • Megraw, M.1    Baev, V.2    Rusinov, V.3
  • 41
    • 67651036643 scopus 로고    scopus 로고
    • Roles of plant small RNAs in biotic stress responses
    • 10.1146/annurev.arplant.043008.092111, 19519217
    • Ruiz-Ferrer V, Voinnet O. Roles of plant small RNAs in biotic stress responses. Annu Rev Plant Biol 2009, 60:485-510. 10.1146/annurev.arplant.043008.092111, 19519217.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 485-510
    • Ruiz-Ferrer, V.1    Voinnet, O.2
  • 42
    • 77956111169 scopus 로고    scopus 로고
    • Role of small RNAs in host-microbe interactions
    • 10.1146/annurev-phyto-073009-114457, 20687832
    • Katiyar-Agarwal S, Jin H. Role of small RNAs in host-microbe interactions. Annu Rev Phytopathol 2010, 48:225. 10.1146/annurev-phyto-073009-114457, 20687832.
    • (2010) Annu Rev Phytopathol , vol.48 , pp. 225
    • Katiyar-Agarwal, S.1    Jin, H.2
  • 43
    • 78650985710 scopus 로고    scopus 로고
    • Manipulating broad-spectrum disease resistance by suppressing pathogen-induced auxin accumulation in rice
    • 10.1104/pp.110.163774, 3075746, 21071600
    • Fu J, Liu H, Li Y, et al. Manipulating broad-spectrum disease resistance by suppressing pathogen-induced auxin accumulation in rice. Plant Physiol 2011, 155:589-602. 10.1104/pp.110.163774, 3075746, 21071600.
    • (2011) Plant Physiol , vol.155 , pp. 589-602
    • Fu, J.1    Liu, H.2    Li, Y.3
  • 44
    • 43549101425 scopus 로고    scopus 로고
    • Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice
    • 10.1105/tpc.107.055657, 2254934, 18192436
    • Ding X, Cao Y, Huang L, et al. Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice. Plant Cell 2008, 20:228-240. 10.1105/tpc.107.055657, 2254934, 18192436.
    • (2008) Plant Cell , vol.20 , pp. 228-240
    • Ding, X.1    Cao, Y.2    Huang, L.3
  • 46
    • 42449109504 scopus 로고    scopus 로고
    • Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
    • 10.1261/rna.895308, 2327369, 18356539
    • Liu H, Tian X, Li Y, Wu C. Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 2008, 14:836-843. 10.1261/rna.895308, 2327369, 18356539.
    • (2008) RNA , vol.14 , pp. 836-843
    • Liu, H.1    Tian, X.2    Li, Y.3    Wu, C.4
  • 47
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar R, Zhu J. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Sci STKE 2004, 16:2001-2019.
    • (2004) Sci STKE , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.2
  • 49
    • 85115040077 scopus 로고    scopus 로고
    • The Bacterial Pathogen Xanthomonas oryzae overcomes rice defenses by regulating host copper redistribution
    • 10.1105/tpc.109.220110, 2828698, 20061550
    • Yuan M, Chu Z, Li X, Xu C, Wang S. The Bacterial Pathogen Xanthomonas oryzae overcomes rice defenses by regulating host copper redistribution. Plant Cell 2010, 22:1-14. 10.1105/tpc.109.220110, 2828698, 20061550.
    • (2010) Plant Cell , vol.22 , pp. 1-14
    • Yuan, M.1    Chu, Z.2    Li, X.3    Xu, C.4    Wang, S.5
  • 50
    • 33750440526 scopus 로고    scopus 로고
    • A two-hit trigger for siRNA biogenesis in plants
    • 10.1016/j.cell.2006.09.032, 17081978
    • Axtell MJ, Jan C, Rajagopalan R, Bartel DP. A two-hit trigger for siRNA biogenesis in plants. Cell 2006, 127:565-577. 10.1016/j.cell.2006.09.032, 17081978.
    • (2006) Cell , vol.127 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.4
  • 51
    • 34250717043 scopus 로고    scopus 로고
    • Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting[W][OA]
    • 10.1105/tpc.107.050062, 1867363, 17400893
    • Howell MD, Fahlgren N, Chapman EJ, et al. Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting[W][OA]. Plant Cell 2007, 19:926-942. 10.1105/tpc.107.050062, 1867363, 17400893.
    • (2007) Plant Cell , vol.19 , pp. 926-942
    • Howell, M.D.1    Fahlgren, N.2    Chapman, E.J.3
  • 52
    • 33745804463 scopus 로고    scopus 로고
    • MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis
    • 10.1105/tpc.106.042127, 1488920, 16798886
    • Ronemus M, Vaughn MW, Martienssen RA. MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. Plant Cell 2006, 18:1559-1574. 10.1105/tpc.106.042127, 1488920, 16798886.
    • (2006) Plant Cell , vol.18 , pp. 1559-1574
    • Ronemus, M.1    Vaughn, M.W.2    Martienssen, R.A.3
  • 53
    • 73149089202 scopus 로고    scopus 로고
    • Transcriptional control of gene expression by microRNAs
    • 10.1016/j.cell.2009.12.023, 20085706
    • Khraiwesh B, Arif MA, Seumel GI, et al. Transcriptional control of gene expression by microRNAs. Cell 2010, 140:111-122. 10.1016/j.cell.2009.12.023, 20085706.
    • (2010) Cell , vol.140 , pp. 111-122
    • Khraiwesh, B.1    Arif, M.A.2    Seumel, G.I.3
  • 54
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European molecular biology open software suite
    • 10.1016/S0168-9525(00)02024-2, 10827456
    • Rice P, Longden I, Bleasby A. EMBOSS: the European molecular biology open software suite. Trends Genet 2000, 16:276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 55
    • 58149191274 scopus 로고    scopus 로고
    • Rfam: updates to the RNA families database
    • 10.1093/nar/gkn766, 2686503, 18953034
    • Gardner PP, Daub J, Tate JG, et al. Rfam: updates to the RNA families database. Nucleic Acids Res 2009, 37:D136-D140. 10.1093/nar/gkn766, 2686503, 18953034.
    • (2009) Nucleic Acids Res , vol.37
    • Gardner, P.P.1    Daub, J.2    Tate, J.G.3
  • 56
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 57
    • 34249772381 scopus 로고
    • Fast folding and comparison of RNA secondary structures
    • 10.1007/BF00818163, 3282132, 22359732
    • Hofacker IL, Fontana W, Stadler PF, et al. Fast folding and comparison of RNA secondary structures. Monatshefte für Chemie Chemical Monthly 1994, 125:167-188. 10.1007/BF00818163, 3282132, 22359732.
    • (1994) Monatshefte für Chemie Chemical Monthly , vol.125 , pp. 167-188
    • Hofacker, I.L.1    Fontana, W.2    Stadler, P.F.3
  • 58
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 59
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • 10.1261/rna.2183803, 1370393, 12592000
    • Ambros V, Bartel B, Bartel DP, et al. A uniform system for microRNA annotation. RNA 2003, 9:277. 10.1261/rna.2183803, 1370393, 12592000.
    • (2003) RNA , vol.9 , pp. 277
    • Ambros, V.1    Bartel, B.2    Bartel, D.P.3
  • 60
    • 43449085794 scopus 로고    scopus 로고
    • UShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts
    • Jiang M, Anderson J, Gillespie J, Mayne M. uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts. BMC Bioinforma 2008, 9:192.
    • (2008) BMC Bioinforma , vol.9 , pp. 192
    • Jiang, M.1    Anderson, J.2    Gillespie, J.3    Mayne, M.4
  • 62
    • 79959881381 scopus 로고    scopus 로고
    • Plant microRNAs and their role in defense against viruses: a bioinformatics approach
    • 10.1186/1471-2229-10-138, 3017820, 20594353
    • Pérez-Quintero AL, Neme R, Zapata A, López C. Plant microRNAs and their role in defense against viruses: a bioinformatics approach. BMC Plant Biol 2010, 10:138. 10.1186/1471-2229-10-138, 3017820, 20594353.
    • (2010) BMC Plant Biol , vol.10 , pp. 138
    • Pérez-Quintero, A.L.1    Neme, R.2    Zapata, A.3    López, C.4
  • 63
    • 23144458275 scopus 로고    scopus 로고
    • MiRU: an automated plant miRNA target prediction server
    • Zhang Y. miRU: an automated plant miRNA target prediction server. Gene 2005, 33:701-704.
    • (2005) Gene , vol.33 , pp. 701-704
    • Zhang, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.