메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages 23-31

SiRNA-directed DNA methylation in plants

Author keywords

ARGONAUTE; DNA methylation; Plants; SiRNA

Indexed keywords

ARGONAUTE 4 PROTEIN; ARGONAUTE PROTEIN; DICER; DNA DIRECTED RNA POLYMERASE; DNA METHYLTRANSFERASE; METHYLTRANSFERASE; MICRORNA; PEPTIDES AND PROTEINS; RNA DIRECTED DNA POLYMERASE; SGS3 PROTEIN; SMALL INTERFERING RNA; UNCLASSIFIED DRUG;

EID: 84926289705     PISSN: 13892029     EISSN: 18755488     Source Type: Journal    
DOI: 10.2174/1389202915666141128002211     Document Type: Article
Times cited : (64)

References (95)
  • 1
    • 84901041535 scopus 로고    scopus 로고
    • RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
    • Matzke, M.A.; Mosher, R.A. RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat. Rev. Genet., 2014, 15(6), 394-408.
    • (2014) Nat. Rev. Genet , vol.15 , Issue.6 , pp. 394-408
    • Matzke, M.A.1    Mosher, R.A.2
  • 2
    • 84872533627 scopus 로고    scopus 로고
    • RNA interference in the nucleus: Roles for small RNAs in transcription, epigenetics and beyond
    • Castel, S.E.; Martienssen, R.A. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat. Rev. Genet., 2013, 14(2), 100-112.
    • (2013) Nat. Rev. Genet , vol.14 , Issue.2 , pp. 100-112
    • Castel, S.E.1    Martienssen, R.A.2
  • 3
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law, J.A.; Jacobsen, S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet., 2010, 11(3), 204-220.
    • (2010) Nat. Rev. Genet , vol.11 , Issue.3 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 5
    • 0034596989 scopus 로고    scopus 로고
    • Transcriptional silencing and promoter methylation triggered by double-stranded RNA
    • Mette, M.F.; Aufsatz, W.; van der Winden, J.; Matzke, M.A.; Matzke, A.J. Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J., 2000, 19(19), 5194-5201.
    • (2000) EMBO J , vol.19 , Issue.19 , pp. 5194-5201
    • Mette, M.F.1    Aufsatz, W.2    Van Der Winden, J.3    Matzke, M.A.4    Matzke, A.J.5
  • 7
    • 42549096814 scopus 로고    scopus 로고
    • PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
    • Mosher, R.A.; Schwach, F.; Studholme, D.; Baulcombe, D.C. PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis. Proc. Nat. Acad. Sci. U.S.A, 2008, 105(8), 3145-3150.
    • (2008) Proc. Nat. Acad. Sci. U.S.A , vol.105 , Issue.8 , pp. 3145-3150
    • Mosher, R.A.1    Schwach, F.2    Studholme, D.3    Baulcombe, D.C.4
  • 9
    • 79953746026 scopus 로고    scopus 로고
    • An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
    • Ito, H.; Gaubert, H.; Bucher, E.; Mirouze, M.; Vaillant, I.; Paszkowski, J. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature, 2011, 472(7341), 115-119.
    • (2011) Nature , vol.472 , Issue.7341 , pp. 115-119
    • Ito, H.1    Gaubert, H.2    Bucher, E.3    Mirouze, M.4    Vaillant, I.5    Paszkowski, J.6
  • 10
    • 67149086996 scopus 로고    scopus 로고
    • Extensive demethylation of repetitive elements during seed development underlies gene imprinting
    • Gehring, M.; Bubb, K.L.; Henikoff, S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science, 2009, 324(5933), 1447-1451.
    • (2009) Science , vol.324 , Issue.5933 , pp. 1447-1451
    • Gehring, M.1    Bubb, K.L.2    Henikoff, S.3
  • 13
    • 0035878120 scopus 로고    scopus 로고
    • Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
    • Bartee, L.; Malagnac, F.; Bender, J. Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Develop., 2001, 15(14), 1753-1758.
    • (2001) Genes Develop , vol.15 , Issue.14 , pp. 1753-1758
    • Bartee, L.1    Malagnac, F.2    Bender, J.3
  • 15
    • 17744364327 scopus 로고    scopus 로고
    • Gardening the genome: DNA methylation in Arabidopsis thaliana
    • Chan, S.W.; Henderson, I.R.; Jacobsen, S.E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Rev. Gene., 2005, 6(5), 351-360.
    • (2005) Nature Rev. Gene , vol.6 , Issue.5 , pp. 351-360
    • Chan, S.W.1    Henderson, I.R.2    Jacobsen, S.E.3
  • 16
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • Herr, A.J.; Jensen, M.B.; Dalmay, T.; Baulcombe, D.C. RNA polymerase IV directs silencing of endogenous DNA. Science, 2005, 308(5718), 118-120.
    • (2005) Science , vol.308 , Issue.5718 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 18
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Onodera, Y.; Haag, J.R.; Ream, T.; Costa Nunes, P.; Pontes, O.; Pikaard, C.S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell, 2005, 120(5), 613-622.
    • (2005) Cell , vol.120 , Issue.5 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Costa Nunes, P.4    Pontes, O.5    Pikaard, C.S.6
  • 20
    • 23944493378 scopus 로고    scopus 로고
    • Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis
    • Li, J.; Yang, Z.; Yu, B.; Liu, J.; Chen, X. Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Curr. Biol., 2005, 15(16), 1501-1507.
    • (2005) Curr. Biol , vol.15 , Issue.16 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 21
    • 84860307087 scopus 로고    scopus 로고
    • Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis
    • Ren, G.; Chen, X.; Yu, B. Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis. Curr. Biol., 2012, 22(8), 695-700.
    • (2012) Curr. Biol , vol.22 , Issue.8 , pp. 695-700
    • Ren, G.1    Chen, X.2    Yu, B.3
  • 22
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • Zilberman, D.; Cao, X.; Jacobsen, S.E. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science, 2003, 299(5607), 716-719.
    • (2003) Science , vol.299 , Issue.5607 , pp. 716-719
    • Zilberman, D.1    Cao, X.2    Jacobsen, S.E.3
  • 23
    • 35348970326 scopus 로고    scopus 로고
    • Reiter ated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components
    • El-Shami, M.; Pontier, D.; Lahmy, S.; Braun, L.; Picart, C.; Vega, D.; Hakimi, M.A.; Jacobsen, S.E.; Cooke, R.; Lagrange, T. Reiter ated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Develop., 2007, 21(20), 2539-2544.
    • (2007) Genes Develop , vol.21 , Issue.20 , pp. 2539-2544
    • El-Shami, M.1    Pontier, D.2    Lahmy, S.3    Braun, L.4    Picart, C.5    Vega, D.6    Hakimi, M.A.7    Jacobsen, S.E.8    Cooke, R.9    Lagrange, T.10
  • 24
    • 67349112845 scopus 로고    scopus 로고
    • RNA polymerase V transcription guides ARGONAUTE4 to chromatin
    • Wierzbicki, A.T.; Ream, T.S.; Haag, J.R.; Pikaard, C.S. RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat Genet., 2009, 41(5), 630-634.
    • (2009) Nat Genet , vol.41 , Issue.5 , pp. 630-634
    • Wierzbicki, A.T.1    Ream, T.S.2    Haag, J.R.3    Pikaard, C.S.4
  • 25
    • 73449113271 scopus 로고    scopus 로고
    • Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor
    • Mateos, J.L.; Bologna, N.G.; Chorostecki, U.; Palatnik, J.F. Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor. Curr. Biol., 2010, 20(1), 49-54.
    • (2010) Curr. Biol , vol.20 , Issue.1 , pp. 49-54
    • Mateos, J.L.1    Bologna, N.G.2    Chorostecki, U.3    Palatnik, J.F.4
  • 26
    • 26944441255 scopus 로고    scopus 로고
    • Dicing and slicing: The core machinery of the RNA interference pathway
    • Hammond, S.M. Dicing and slicing: the core machinery of the RNA interference pathway. FEBS Lett., 2005, 579(26), 5822-5829.
    • (2005) FEBS Lett , vol.579 , Issue.26 , pp. 5822-5829
    • Hammond, S.M.1
  • 27
    • 84864517927 scopus 로고    scopus 로고
    • Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis
    • Ren, G.; Xie, M.; Dou, Y.; Zhang, S.; Zhang, C.; Yu, B. Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis. Proc. National Acad. Sci. U.S.A., 2012, 109(31), 12817-12821.
    • (2012) Proc. National Acad. Sci. U.S.A , vol.109 , Issue.31 , pp. 12817-12821
    • Ren, G.1    Xie, M.2    Dou, Y.3    Zhang, S.4    Zhang, C.5    Yu, B.6
  • 29
    • 84886386019 scopus 로고    scopus 로고
    • CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts
    • Zhang, S.; Xie, M.; Ren, G.; Yu, B. CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts. Proc. Nat. Acad. Sci. U. S. A, 2013, 110(43), 17588-17593.
    • (2013) Proc. Nat. Acad. Sci. U. S. A , vol.110 , Issue.43 , pp. 17588-17593
    • Zhang, S.1    Xie, M.2    Ren, G.3    Yu, B.4
  • 30
    • 84876419021 scopus 로고    scopus 로고
    • The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis
    • Zhang, C.J.; Zhou, J.X.; Liu, J.; Ma, Z.Y.; Zhang, S.W.; Dou, K.; Huang, H.W.; Cai, T.; Liu, R.; Zhu, J.K.; He, X.J. The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis. EMBO J., 2013, 32(8), 1128-1140.
    • (2013) EMBO J , vol.32 , Issue.8 , pp. 1128-1140
    • Zhang, C.J.1    Zhou, J.X.2    Liu, J.3    Ma, Z.Y.4    Zhang, S.W.5    Dou, K.6    Huang, H.W.7    Cai, T.8    Liu, R.9    Zhu, J.K.10    He, X.J.11
  • 31
    • 33745279055 scopus 로고    scopus 로고
    • Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    • Henderson, I.R.; Zhang, X.; Lu, C.; Johnson, L.; Meyers, B.C.; Green, P.J.; Jacobsen, S.E. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat. Genet, 2006, 38(6), 721-725.
    • (2006) Nat. Genet , vol.38 , Issue.6 , pp. 721-725
    • Henderson, I.R.1    Zhang, X.2    Lu, C.3    Johnson, L.4    Meyers, B.C.5    Green, P.J.6    Jacobsen, S.E.7
  • 32
    • 50949121524 scopus 로고    scopus 로고
    • Viral genome methylation as an epigenetic defense against geminiviruses
    • Raja, P.; Sanville, B.C.; Buchmann, R.C.; Bisaro, D.M. Viral genome methylation as an epigenetic defense against geminiviruses. J. Virol., 2008, 82(18), 8997-9007.
    • (2008) J. Virol , vol.82 , Issue.18 , pp. 8997-9007
    • Raja, P.1    Sanville, B.C.2    Buchmann, R.C.3    Bisaro, D.M.4
  • 33
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
    • Haag, J.R.; Pikaard, C.S. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nature Rev. Mol. Cell Biol., 2011, 12(8), 483-492.
    • (2011) Nature Rev. Mol. Cell Biol , vol.12 , Issue.8 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 34
    • 58649104893 scopus 로고    scopus 로고
    • Pikaard, C.S. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
    • Ream, T.S.; Haag, J.R.; Wierzbicki, A.T.; Nicora, C.D.; Norbeck, A.D.; Zhu, J.K.; Hagen, G.; Guilfoyle, T.J.; Pasa-Tolic, L.; Pikaard, C.S. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol. Cell, 2009, 33(2), 192-203.
    • (2009) Mol. Cell , vol.33 , Issue.2 , pp. 192-203
    • Ream, T.S.1    Haag, J.R.2    Wierzbicki, A.T.3    Nicora, C.D.4    Norbeck, A.D.5    Zhu, J.K.6    Hagen, G.7    Guilfoyle, T.J.8    Pasa-Tolic, L.9
  • 36
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • Pontier, D.; Yahubyan, G.; Vega, D.; Bulski, A.; Saez-Vasquez, J.; Hakimi, M.A.; Lerbs-Mache, S.; Colot, V.; Lagrange, T. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Develop., 2005, 19(17), 2030-2040.
    • (2005) Genes Develop , vol.19 , Issue.17 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5    Hakimi, M.A.6    Lerbs-Mache, S.7    Colot, V.8    Lagrange, T.9
  • 37
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • Wierzbicki, A.T.; Haag, J.R.; Pikaard, C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell, 2008, 135(4), 635-648.
    • (2008) Cell , vol.135 , Issue.4 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 38
    • 59949097829 scopus 로고    scopus 로고
    • NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation
    • He, X.J.; Hsu, Y.F.; Pontes, O.; Zhu, J.; Lu, J.; Bressan, R.A.; Pikaard, C.; Wang, C.S.; Zhu, J.K. NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes Develop., 2009, 23(3), 318-330.
    • (2009) Genes Develop , vol.23 , Issue.3 , pp. 318-330
    • He, X.J.1    Hsu, Y.F.2    Pontes, O.3    Zhu, J.4    Lu, J.5    Bressan, R.A.6    Pikaard, C.7    Wang, C.S.8    Zhu, J.K.9
  • 39
    • 84881499798 scopus 로고    scopus 로고
    • Use of forward genetic screens to identify genes required for RNA-directed DNA methylation in Arabidopsis thaliana
    • Eun, C.; Lorkovic, Z.J.; Sasaki, T.; Naumann, U.; Matzke, A.J.; Matzke, M. Use of forward genetic screens to identify genes required for RNA-directed DNA methylation in Arabidopsis thaliana. Cold Spring Harb. Symp. Quant. Biol., 2012, 77, 195-204.
    • (2012) Cold Spring Harb. Symp. Quant. Biol , vol.77 , pp. 195-204
    • Eun, C.1    Lorkovic, Z.J.2    Sasaki, T.3    Naumann, U.4    Matzke, A.J.5    Matzke, M.6
  • 40
    • 72849124237 scopus 로고    scopus 로고
    • Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis
    • Zheng, B.; Wang, Z.; Li, S.; Yu, B.; Liu, J.Y.; Chen, X. Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis. Genes Develop., 2009, 23(24), 2850-2860.
    • (2009) Genes Develop , vol.23 , Issue.24 , pp. 2850-2860
    • Zheng, B.1    Wang, Z.2    Li, S.3    Yu, B.4    Liu, J.Y.5    Chen, X.6
  • 41
    • 34347382532 scopus 로고    scopus 로고
    • An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
    • Smith, L.M.; Pontes, O.; Searle, I.; Yelina, N.; Yousafzai, F.K.; Herr, A.J.; Pikaard, C.S.; Baulcombe, D.C. An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell, 2007, 19(5), 1507-1521.
    • (2007) Plant Cell , vol.19 , Issue.5 , pp. 1507-1521
    • Smith, L.M.1    Pontes, O.2    Searle, I.3    Yelina, N.4    Yousafzai, F.K.5    Herr, A.J.6    Pikaard, C.S.7    Baulcombe, D.C.8
  • 43
    • 79960960568 scopus 로고    scopus 로고
    • SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
    • Law, J.A.; Vashisht, A.A.; Wohlschlegel, J.A.; Jacobsen, S.E. SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genetics, 2011, 7(7), e1002195.
    • (2011) Plos Genetics , vol.7 , Issue.7
    • Law, J.A.1    Vashisht, A.A.2    Wohlschlegel, J.A.3    Jacobsen, S.E.4
  • 45
    • 82655168764 scopus 로고    scopus 로고
    • An atypical component of RNAdirected DNA methylation machinery has both DNA methylationdependent and-independent roles in locus-specific transcriptional gene silencing
    • Liu, J.; Bai, G.; Zhang, C.; Chen, W.; Zhou, J.; Zhang, S.; Chen, Q.; Deng, X.; He, X.J.; Zhu, J.K. An atypical component of RNAdirected DNA methylation machinery has both DNA methylationdependent and-independent roles in locus-specific transcriptional gene silencing. Cell Res., 2011, 21(12), 1691-1700.
    • (2011) Cell Res , vol.21 , Issue.12 , pp. 1691-1700
    • Liu, J.1    Bai, G.2    Zhang, C.3    Chen, W.4    Zhou, J.5    Zhang, S.6    Chen, Q.7    Deng, X.8    He, X.J.9    Zhu, J.K.10
  • 46
    • 65249093731 scopus 로고    scopus 로고
    • An effector of RNAdirected DNA methylation in arabidopsis is an ARGONAUTE 4-and RNA-binding protein
    • He, X.J.; Hsu, Y.F.; Zhu, S.; Wierzbicki, A.T.; Pontes, O.; Pikaard, C.S.; Liu, H.L.; Wang, C.S.; Jin, H.; Zhu, J.K. An effector of RNAdirected DNA methylation in arabidopsis is an ARGONAUTE 4-and RNA-binding protein. Cell, 2009, 137(3), 498-508.
    • (2009) Cell , vol.137 , Issue.3 , pp. 498-508
    • He, X.J.1    Hsu, Y.F.2    Zhu, S.3    Wierzbicki, A.T.4    Pontes, O.5    Pikaard, C.S.6    Liu, H.L.7    Wang, C.S.8    Jin, H.9    Zhu, J.K.10
  • 47
    • 67349099134 scopus 로고    scopus 로고
    • RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family
    • Bies-Etheve, N.; Pontier, D.; Lahmy, S.; Picart, C.; Vega, D.; Cooke, R.; Lagrange, T. RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family. EMBO Rep., 2009, 10(6), 649-654.
    • (2009) EMBO Rep , vol.10 , Issue.6 , pp. 649-654
    • Bies-Etheve, N.1    Pontier, D.2    Lahmy, S.3    Picart, C.4    Vega, D.5    Cooke, R.6    Lagrange, T.7
  • 48
    • 79959838293 scopus 로고    scopus 로고
    • Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing
    • Rowley, M.J.; Avrutsky, M.I.; Sifuentes, C.J.; Pereira, L.; Wierzbicki, A.T. Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing. PLoS Genetics, 2011, 7(6), e1002120.
    • (2011) Plos Genetics , vol.7 , Issue.6
    • Rowley, M.J.1    Avrutsky, M.I.2    Sifuentes, C.J.3    Pereira, L.4    Wierzbicki, A.T.5
  • 49
    • 72549089751 scopus 로고    scopus 로고
    • A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development
    • He, X.J.; Hsu, Y.F.; Zhu, S.; Liu, H.L.; Pontes, O.; Zhu, J.; Cui, X.; Wang, C.S.; Zhu, J.K. A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes Develop., 2009, 23(23), 2717-2722.
    • (2009) Genes Develop , vol.23 , Issue.23 , pp. 2717-2722
    • He, X.J.1    Hsu, Y.F.2    Zhu, S.3    Liu, H.L.4    Pontes, O.5    Zhu, J.6    Cui, X.7    Wang, C.S.8    Zhu, J.K.9
  • 51
    • 42649089072 scopus 로고    scopus 로고
    • A structuralmaintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
    • Kanno, T.; Bucher, E.; Daxinger, L.; Huettel, B.; Bohmdorfer, G.; Gregor, W.; Kreil, D.P.; Matzke, M.; Matzke, A.J. A structuralmaintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nat. Genet, 2008, 40(5), 670-675.
    • (2008) Nat. Genet , vol.40 , Issue.5 , pp. 670-675
    • Kanno, T.1    Bucher, E.2    Daxinger, L.3    Huettel, B.4    Bohmdorfer, G.5    Gregor, W.6    Kreil, D.P.7    Matzke, M.8    Matzke, A.J.9
  • 53
    • 77953129746 scopus 로고    scopus 로고
    • A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis
    • Law, J.A.; Ausin, I.; Johnson, L.M.; Vashisht, A.A.; Zhu, J.K.; Wohlschlegel, J.A.; Jacobsen, S.E. A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis. Curr. Biol., 2010, 20(10), 951-956.
    • (2010) Curr. Biol , vol.20 , Issue.10 , pp. 951-956
    • Law, J.A.1    Ausin, I.2    Johnson, L.M.3    Vashisht, A.A.4    Zhu, J.K.5    Wohlschlegel, J.A.6    Jacobsen, S.E.7
  • 55
    • 84864354817 scopus 로고    scopus 로고
    • Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana
    • Kuhlmann, M.; Mette, M.F. Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana. Plant Mol. Biol., 2012, 79(6), 623-633.
    • (2012) Plant Mol. Biol , vol.79 , Issue.6 , pp. 623-633
    • Kuhlmann, M.1    Mette, M.F.2
  • 57
    • 84893801023 scopus 로고    scopus 로고
    • The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci
    • Liu, Z.W.; Shao, C.R.; Zhang, C.J.; Zhou, J.X.; Zhang, S.W.; Li, L.; Chen, S.; Huang, H.W.; Cai, T.; He, X.J. The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci. PLoS Genetics, 2014, 10(1), e1003948.
    • (2014) Plos Genetics , vol.10 , Issue.1
    • Liu, Z.W.1    Shao, C.R.2    Zhang, C.J.3    Zhou, J.X.4    Zhang, S.W.5    Li, L.6    Chen, S.7    Huang, H.W.8    Cai, T.9    He, X.J.10
  • 58
    • 33644850032 scopus 로고    scopus 로고
    • Nomenclature and functions of RNAdirected RNA polymerases
    • Wassenegger, M.; Krczal, G. Nomenclature and functions of RNAdirected RNA polymerases. Trends Plant Sci., 2006, 11(3), 142-151.
    • (2006) Trends Plant Sci , vol.11 , Issue.3 , pp. 142-151
    • Wassenegger, M.1    Krczal, G.2
  • 59
    • 69549127823 scopus 로고    scopus 로고
    • Evolution of the RNA-dependent RNA polymerase (RdRP) genes: Duplications and possible losses before and after the divergence of major eukaryotic groups
    • Zong, J.; Yao, X.; Yin, J.; Zhang, D.; Ma, H. Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups. Gene, 2009, 447(1), 29-39.
    • (2009) Gene , vol.447 , Issue.1 , pp. 29-39
    • Zong, J.1    Yao, X.2    Yin, J.3    Zhang, D.4    Ma, H.5
  • 61
    • 33745690105 scopus 로고    scopus 로고
    • The Arabidopsis chromatinmodifying nuclear siRNA pathway involves a nucleolar RNA processing center
    • Pontes, O.; Li, C.F.; Costa Nunes, P.; Haag, J.; Ream, T.; Vitins, A.; Jacobsen, S.E.; Pikaard, C.S. The Arabidopsis chromatinmodifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell, 2006, 126(1), 79-92.
    • (2006) Cell , vol.126 , Issue.1 , pp. 79-92
    • Pontes, O.1    Li, C.F.2    Costa Nunes, P.3    Haag, J.4    Ream, T.5    Vitins, A.6    Jacobsen, S.E.7    Pikaard, C.S.8
  • 63
    • 84870942752 scopus 로고    scopus 로고
    • In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
    • Haag, J.R.; Ream, T.S.; Marasco, M.; Nicora, C.D.; Norbeck, A.D.; Pasa-Tolic, L.; Pikaard, C.S. In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing. Mol. Cell, 2012, 48(5), 811-818.
    • (2012) Mol. Cell , vol.48 , Issue.5 , pp. 811-818
    • Haag, J.R.1    Ream, T.S.2    Marasco, M.3    Nicora, C.D.4    Norbeck, A.D.5    Pasa-Tolic, L.6    Pikaard, C.S.7
  • 64
    • 77956515946 scopus 로고    scopus 로고
    • In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa
    • Aalto, A.P.; Poranen, M.M.; Grimes, J.M.; Stuart, D.I.; Bamford, D.H. In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa. J. Biol. Chem., 2010, 285(38), 29367-29374.
    • (2010) J. Biol. Chem , vol.285 , Issue.38 , pp. 29367-29374
    • Aalto, A.P.1    Poranen, M.M.2    Grimes, J.M.3    Stuart, D.I.4    Bamford, D.H.5
  • 65
    • 46149088681 scopus 로고    scopus 로고
    • Plant ARGONAUTES
    • Vaucheret, H. Plant ARGONAUTES. Trends in Plant Sci., 2008, 13(7), 350-358.
    • (2008) Trends in Plant Sci , vol.13 , Issue.7 , pp. 350-358
    • Vaucheret, H.1
  • 66
    • 77950342461 scopus 로고    scopus 로고
    • The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
    • Havecker, E.R.; Wallbridge, L.M.; Hardcastle, T.J.; Bush, M.S.; Kelly, K.A.; Dunn, R.M.; Schwach, F.; Doonan, J.H.; Baulcombe, D.C. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell, 2010, 22(2), 321-334.
    • (2010) Plant Cell , vol.22 , Issue.2 , pp. 321-334
    • Havecker, E.R.1    Wallbridge, L.M.2    Hardcastle, T.J.3    Bush, M.S.4    Kelly, K.A.5    Dunn, R.M.6    Schwach, F.7    Doonan, J.H.8    Baulcombe, D.C.9
  • 67
    • 84862989445 scopus 로고    scopus 로고
    • Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes
    • Ye, R.; Wang, W.; Iki, T.; Liu, C.; Wu, Y.; Ishikawa, M.; Zhou, X.; Qi, Y. Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes. Mol. Cell, 2012, 46(6), 859-870.
    • (2012) Mol. Cell , vol.46 , Issue.6 , pp. 859-870
    • Ye, R.1    Wang, W.2    Iki, T.3    Liu, C.4    Wu, Y.5    Ishikawa, M.6    Zhou, X.7    Qi, Y.8
  • 69
    • 71449098588 scopus 로고    scopus 로고
    • IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana
    • Ausin, I.; Mockler, T.C.; Chory, J.; Jacobsen, S.E. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nature Structural Mol. Biol., 2009, 16(12), 1325-1327.
    • (2009) Nature Structural Mol. Biol , vol.16 , Issue.12 , pp. 1325-1327
    • Ausin, I.1    Mockler, T.C.2    Chory, J.3    Jacobsen, S.E.4
  • 70
    • 84868202138 scopus 로고    scopus 로고
    • The DNA-and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation
    • Xie, M.; Ren, G.; Zhang, C.; Yu, B. The DNA-and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation. Plant J., 2012, 72(3), 491-500.
    • (2012) Plant J , vol.72 , Issue.3 , pp. 491-500
    • Xie, M.1    Ren, G.2    Zhang, C.3    Yu, B.4
  • 71
    • 84861564518 scopus 로고    scopus 로고
    • A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation
    • Xie, M.; Ren, G.; Costa-Nunes, P.; Pontes, O.; Yu, B. A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Res., 2012, 40(10), 4422-31.
    • (2012) Nucleic Acids Res , vol.40 , Issue.10 , pp. 4422-4431
    • Xie, M.1    Ren, G.2    Costa-Nunes, P.3    Pontes, O.4    Yu, B.5
  • 72
    • 77951824122 scopus 로고    scopus 로고
    • An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis
    • Zheng, Z.; Xing, Y.; He, X.J.; Li, W.; Hu, Y.; Yadav, S.K.; Oh, J.; Zhu, J.K. An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis. Plant J., 2010, 62(1), 92-99.
    • (2010) Plant J , vol.62 , Issue.1 , pp. 92-99
    • Zheng, Z.1    Xing, Y.2    He, X.J.3    Li, W.4    Hu, Y.5    Yadav, S.K.6    Oh, J.7    Zhu, J.K.8
  • 75
    • 84904042520 scopus 로고    scopus 로고
    • RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNA
    • Bohmdorfer, G.; Rowley, M.J.; Kucinski, J.; Zhu, Y.; Amies, I.; Wierzbicki, A.T., RNA-directed DNA methylation requires stepwise binding of silencing factors to long non-coding RNA. Plant J., 2014, 79(2), 181-191.
    • (2014) Plant J , vol.79 , Issue.2 , pp. 181-191
    • Bohmdorfer, G.1    Rowley, M.J.2    Kucinski, J.3    Zhu, Y.4    Amies, I.5    Wierzbicki, A.T.6
  • 76
    • 84872787042 scopus 로고    scopus 로고
    • SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing. Mol
    • Zhu, Y.; Rowley, M.J.; Bohmdorfer, G.; Wierzbicki, A.T. A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing. Mol. Cell, 2013, 49(2), 298-309.
    • (2013) Cell , vol.49 , Issue.2 , pp. 298-309
    • Zhu, Y.1    Rowley, M.J.2    Bohmdorfer, G.3    Wierzbicki, A.4
  • 77
    • 0037046810 scopus 로고    scopus 로고
    • Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • Cao, X.; Jacobsen, S.E. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr. Biol., 2002, 12(13), 1138-1144.
    • (2002) Curr. Biol , vol.12 , Issue.13 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 78
    • 52349089796 scopus 로고    scopus 로고
    • Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
    • Bernatavichute, Y.V.; Zhang, X.; Cokus, S.; Pellegrini, M.; Jacobsen, S.E. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PloS One, 2008, 3(9), e3156.
    • (2008) Plos One , vol.3 , Issue.9
    • Bernatavichute, Y.V.1    Zhang, X.2    Cokus, S.3    Pellegrini, M.4    Jacobsen, S.E.5
  • 79
    • 80055080002 scopus 로고    scopus 로고
    • Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana
    • Enke, R.A.; Dong, Z.; Bender, J. Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana. PLoS Genetics, 2011, 7(10), e1002350.
    • (2011) Plos Genetics , vol.7 , Issue.10
    • Enke, R.A.1    Dong, Z.2    Bender, J.3
  • 80
    • 0037041422 scopus 로고    scopus 로고
    • Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    • Jackson, J.P.; Lindroth, A.M.; Cao, X.; Jacobsen, S.E. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature, 2002, 416(6880), 556-560.
    • (2002) Nature , vol.416 , Issue.6880 , pp. 556-560
    • Jackson, J.P.1    Lindroth, A.M.2    Cao, X.3    Jacobsen, S.E.4
  • 81
    • 33745454548 scopus 로고    scopus 로고
    • Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
    • Ebbs, M.L.; Bender, J. Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell, 2006, 18(5), 1166-1176.
    • (2006) Plant Cell , vol.18 , Issue.5 , pp. 1166-1176
    • Ebbs, M.L.1    Bender, J.2
  • 82
    • 84855272118 scopus 로고    scopus 로고
    • HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis
    • Liu, X.; Yu, C.W.; Duan, J.; Luo, M.; Wang, K.; Tian, G.; Cui, Y.; Wu, K. HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis. Plant Physiol., 2012, 158(1), 119-129.
    • (2012) Plant Physiol , vol.158 , Issue.1 , pp. 119-129
    • Liu, X.1    Yu, C.W.2    Duan, J.3    Luo, M.4    Wang, K.5    Tian, G.6    Cui, Y.7    Wu, K.8
  • 84
    • 78649485519 scopus 로고    scopus 로고
    • Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation
    • Deleris, A.; Greenberg, M.V.; Ausin, I.; Law, R.W.; Moissiard, G.; Schubert, D.; Jacobsen, S.E. Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation. EMBO Reports, 2010, 11(12), 950-955.
    • (2010) EMBO Reports , vol.11 , Issue.12 , pp. 950-955
    • Deleris, A.1    Greenberg, M.V.2    Ausin, I.3    Law, R.W.4    Moissiard, G.5    Schubert, D.6    Jacobsen, S.E.7
  • 85
    • 77952352352 scopus 로고    scopus 로고
    • JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis
    • Searle, I.R.; Pontes, O.; Melnyk, C.W.; Smith, L.M.; Baulcombe, D.C. JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis. Genes & Develop., 2010, 24(10), 986-991.
    • (2010) Genes &Amp; Develop , vol.24 , Issue.10 , pp. 986-991
    • Searle, I.R.1    Pontes, O.2    Melnyk, C.W.3    Smith, L.M.4    Baulcombe, D.C.5
  • 86
    • 84888270533 scopus 로고    scopus 로고
    • Interplay between active chromatin marks and RNAdirected DNA methylation in Arabidopsis thaliana
    • Greenberg, M.V.; Deleris, A.; Hale, C.J.; Liu, A.; Feng, S.; Jacobsen, S.E. Interplay between active chromatin marks and RNAdirected DNA methylation in Arabidopsis thaliana. PLoS Gene., 2013, 9(11), e1003946.
    • (2013) Plos Gene , vol.9 , Issue.11
    • Greenberg, M.V.1    Deleris, A.2    Hale, C.J.3    Liu, A.4    Feng, S.5    Jacobsen, S.E.6
  • 87
    • 34250025664 scopus 로고    scopus 로고
    • Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination
    • Sridhar, V.V.; Kapoor, A.; Zhang, K.; Zhu, J.; Zhou, T.; Hasegawa, P.M.; Bressan, R.A.; Zhu, J.K. Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature, 2007, 447(7145), 735-738.
    • (2007) Nature , vol.447 , Issue.7145 , pp. 735-738
    • Sridhar, V.V.1    Kapoor, A.2    Zhang, K.3    Zhu, J.4    Zhou, T.5    Hasegawa, P.M.6    Bressan, R.A.7    Zhu, J.K.8
  • 90
    • 84877040915 scopus 로고    scopus 로고
    • The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs
    • Nuthikattu, S.; McCue, A.D.; Panda, K.; Fultz, D.; DeFraia, C.; Thomas, E.N.; Slotkin, R.K. The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs. Plant Physiol., 2013, 162(1), 116-131.
    • (2013) Plant Physiol , vol.162 , Issue.1 , pp. 116-131
    • Nuthikattu, S.1    McCue, A.D.2    Panda, K.3    Fultz, D.4    Defraia, C.5    Thomas, E.N.6    Slotkin, R.K.7
  • 93
    • 84867405454 scopus 로고    scopus 로고
    • Ago hook and RNA helicase motifs underpin dual roles for SDE3 in antiviral defense and silencing of nonconserved intergenic regions
    • Garcia, D.; Garcia, S.; Pontier, D.; Marchais, A.; Renou, J.P.; Lagrange, T.; Voinnet, O. Ago hook and RNA helicase motifs underpin dual roles for SDE3 in antiviral defense and silencing of nonconserved intergenic regions. Mol. Cell, 2012, 48(1), 109-120.
    • (2012) Mol. Cell , vol.48 , Issue.1 , pp. 109-120
    • Garcia, D.1    Garcia, S.2    Pontier, D.3    Marchais, A.4    Renou, J.P.5    Lagrange, T.6    Voinnet, O.7
  • 94
    • 77951974552 scopus 로고    scopus 로고
    • Methylation mediated by a microRNA pathway
    • Wu, L.; Zhou, H.; Zhang, Q.; Zhang, J.; Ni, F.; Liu, C.; Qi, Y. DNA methylation mediated by a microRNA pathway. Mol. Cell, 2010, 38(3), 465-475.
    • (2010) Mol. Cell , vol.38 , Issue.3 , pp. 465-475
    • Wu, L.1    Zhou, H.2    Zhang, Q.3    Zhang, J.4    Ni, F.5    Liu, C.6    Qi, Y.7
  • 95
    • 84867135388 scopus 로고    scopus 로고
    • Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation
    • Wu, L.; Mao, L.; Qi, Y. Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation. Plant Physiol., 2012, 160(2), 990-999.
    • (2012) Plant Physiol , vol.160 , Issue.2 , pp. 990-999
    • Wu, L.1    Mao, L.2    Qi, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.