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Volumn 157, Issue 5, 2014, Pages 1050-1060

Molecular mechanism of action of plant DRM de novo DNA methyltransferases

Author keywords

[No Author keywords available]

Indexed keywords

ARGONAUTE 4 PROTEIN; DNA METHYLTRANSFERASE; DOMAINS REARRANGED METHYLTRANSFERASE; HOMODIMER; NUCLEIC ACID BINDING PROTEIN; RNA POLYMERASE; SMALL INTERFERING RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA; ARGONAUTE PROTEIN; DNA METHYLTRANSFERASE 3A; DOMAIN REARRANGED METHYLTRANSFERASE; DOUBLE STRANDED DNA; MONOMER; SINEFUNGIN;

EID: 84901379529     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2014.03.056     Document Type: Article
Times cited : (233)

References (37)
  • 2
    • 0037046810 scopus 로고    scopus 로고
    • Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • DOI 10.1016/S0960-9822(02)00925-9, PII S0960982202009259
    • X. Cao, and S.E. Jacobsen Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing Curr. Biol. 12 2002 1138 1144 (Pubitemid 34766938)
    • (2002) Current Biology , vol.12 , Issue.13 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 4
    • 0027338134 scopus 로고
    • Crystal structure of the Hhal DNA methyltransferase complexed with S- adenosyl-L-methionine
    • DOI 10.1016/0092-8674(93)90421-L
    • X. Cheng, S. Kumar, J. Posfai, J.W. Pflugrath, and R.J. Roberts Crystal structure of the HhaI DNA methyltransferase complexed with S-adenosyl-L- methionine Cell 74 1993 299 307 (Pubitemid 23221706)
    • (1993) Cell , vol.74 , Issue.2 , pp. 299-307
    • Cheng, X.1    Kumar, S.2    Posfai, J.3    Pflugrath, J.W.4    Roberts, R.J.5
  • 7
    • 33644872218 scopus 로고    scopus 로고
    • Gateway-compatible vectors for plant functional genomics and proteomics
    • DOI 10.1111/j.1365-313X.2005.02617.x
    • K.W. Earley, J.R. Haag, O. Pontes, K. Opper, T. Juehne, K. Song, and C.S. Pikaard Gateway-compatible vectors for plant functional genomics and proteomics Plant J. 45 2006 616 629 (Pubitemid 43373712)
    • (2006) Plant Journal , vol.45 , Issue.4 , pp. 616-629
    • Earley, K.W.1    Haag, J.R.2    Pontes, O.3    Opper, K.4    Juehne, T.5    Song, K.6    Pikaard, C.S.7
  • 10
    • 0027159975 scopus 로고
    • Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana
    • E.J. Finnegan, and E.S. Dennis Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana Nucleic Acids Res. 21 1993 2383 2388 (Pubitemid 23180815)
    • (1993) Nucleic Acids Research , vol.21 , Issue.10 , pp. 2383-2388
    • Finnegan, E.J.1    Dennis, E.S.2
  • 12
    • 84888270533 scopus 로고    scopus 로고
    • Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana
    • M.V. Greenberg, A. Deleris, C.J. Hale, A. Liu, S. Feng, and S.E. Jacobsen Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana PLoS Genet. 9 2013 e1003946
    • (2013) PLoS Genet. , vol.9 , pp. 1003946
    • Greenberg, M.V.1    Deleris, A.2    Hale, C.J.3    Liu, A.4    Feng, S.5    Jacobsen, S.E.6
  • 13
    • 78449231939 scopus 로고    scopus 로고
    • The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana
    • I.R. Henderson, A. Deleris, W. Wong, X. Zhong, H.G. Chin, G.A. Horwitz, K.A. Kelly, S. Pradhan, and S.E. Jacobsen The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana PLoS Genet. 6 2010 e1001182
    • (2010) PLoS Genet. , vol.6 , pp. 1001182
    • Henderson, I.R.1    Deleris, A.2    Wong, W.3    Zhong, X.4    Chin, H.G.5    Horwitz, G.A.6    Kelly, K.A.7    Pradhan, S.8    Jacobsen, S.E.9
  • 14
    • 34548603504 scopus 로고    scopus 로고
    • Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation
    • DOI 10.1038/nature06146, PII NATURE06146
    • D. Jia, R.Z. Jurkowska, X. Zhang, A. Jeltsch, and X. Cheng Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation Nature 449 2007 248 251 (Pubitemid 47402375)
    • (2007) Nature , vol.449 , Issue.7159 , pp. 248-251
    • Jia, D.1    Jurkowska, R.Z.2    Zhang, X.3    Jeltsch, A.4    Cheng, X.5
  • 16
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • R.A. Laskowski, M.W. Macarthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Cryst. 26 1993 283 291
    • (1993) J. Appl. Cryst. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    Macarthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 17
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • J.A. Law, and S.E. Jacobsen Establishing, maintaining and modifying DNA methylation patterns in plants and animals Nat. Rev. Genet. 11 2010 204 220
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 19
    • 84863792071 scopus 로고    scopus 로고
    • RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats
    • T.F. Lee, S.G. Gurazada, J. Zhai, S. Li, S.A. Simon, M.A. Matzke, X. Chen, and B.C. Meyers RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats Epigenetics 7 2012 781 795
    • (2012) Epigenetics , vol.7 , pp. 781-795
    • Lee, T.F.1    Gurazada, S.G.2    Zhai, J.3    Li, S.4    Simon, S.A.5    Matzke, M.A.6    Chen, X.7    Meyers, B.C.8
  • 21
  • 25
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Z. Otwinowski, and W. Minor Processing of X-ray Diffraction Data Collected in Oscillation Mode Methods Enzymol. 276 1997 307 326 (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 26
    • 33750435234 scopus 로고    scopus 로고
    • Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
    • DOI 10.1038/nature05198, PII NATURE05198
    • Y. Qi, X. He, X.J. Wang, O. Kohany, J. Jurka, and G.J. Hannon Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation Nature 443 2006 1008 1012 (Pubitemid 44646179)
    • (2006) Nature , vol.443 , Issue.7114 , pp. 1008-1012
    • Qi, Y.1    He, X.2    Wang, X.-J.3    Kohany, O.4    Jurka, J.5    Hannon, G.J.6
  • 27
    • 0038374971 scopus 로고    scopus 로고
    • Many paths to methyltransfer: A chronicle of convergence
    • DOI 10.1016/S0968-0004(03)00090-2
    • H.L. Schubert, R.M. Blumenthal, and X. Cheng Many paths to methyltransfer: a chronicle of convergence Trends Biochem. Sci. 28 2003 329 335 (Pubitemid 36776296)
    • (2003) Trends in Biochemical Sciences , vol.28 , Issue.6 , pp. 329-335
    • Schubert, H.L.1    Blumenthal, R.M.2    Cheng, X.3
  • 28
    • 79952053850 scopus 로고    scopus 로고
    • Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation
    • J. Song, O. Rechkoblit, T.H. Bestor, and D.J. Patel Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation Science 331 2011 1036 1040
    • (2011) Science , vol.331 , pp. 1036-1040
    • Song, J.1    Rechkoblit, O.2    Bestor, T.H.3    Patel, D.J.4
  • 29
    • 84856990498 scopus 로고    scopus 로고
    • Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation
    • J. Song, M. Teplova, S. Ishibe-Murakami, and D.J. Patel Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation Science 335 2012 709 712
    • (2012) Science , vol.335 , pp. 709-712
    • Song, J.1    Teplova, M.2    Ishibe-Murakami, S.3    Patel, D.J.4
  • 30
    • 84872614860 scopus 로고    scopus 로고
    • Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
    • H. Stroud, M.V. Greenberg, S. Feng, Y.V. Bernatavichute, and S.E. Jacobsen Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome Cell 152 2013 352 364
    • (2013) Cell , vol.152 , pp. 352-364
    • Stroud, H.1    Greenberg, M.V.2    Feng, S.3    Bernatavichute, Y.V.4    Jacobsen, S.E.5
  • 32
    • 0142149104 scopus 로고    scopus 로고
    • Preferential de Novo Methylation of Cytosine Residues in Non-CpG Sequences by a Domains Rearranged DNA Methyltransferase from Tobacco Plants
    • DOI 10.1074/jbc.M303892200
    • Y. Wada, H. Ohya, Y. Yamaguchi, N. Koizumi, and H. Sano Preferential de novo methylation of cytosine residues in non-CpG sequences by a domains rearranged DNA methyltransferase from tobacco plants J. Biol. Chem. 278 2003 42386 42393 (Pubitemid 37310509)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.43 , pp. 42386-42393
    • Wada, Y.1    Ohya, H.2    Yamaguchi, Y.3    Koizumi, N.4    Sano, H.5
  • 33
    • 67349112845 scopus 로고    scopus 로고
    • RNA polymerase v transcription guides ARGONAUTE4 to chromatin
    • A.T. Wierzbicki, T.S. Ream, J.R. Haag, and C.S. Pikaard RNA polymerase V transcription guides ARGONAUTE4 to chromatin Nat. Genet. 41 2009 630 634
    • (2009) Nat. Genet. , vol.41 , pp. 630-634
    • Wierzbicki, A.T.1    Ream, T.S.2    Haag, J.R.3    Pikaard, C.S.4
  • 34
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: Whole genome bisulfite sequence MAPping program
    • Y. Xi, and W. Li BSMAP: whole genome bisulfite sequence MAPping program BMC Bioinformatics 10 2009 232
    • (2009) BMC Bioinformatics , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 35
    • 84875741680 scopus 로고    scopus 로고
    • The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
    • A. Zemach, M.Y. Kim, P.H. Hsieh, D. Coleman-Derr, L. Eshed-Williams, K. Thao, S.L. Harmer, and D. Zilberman The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin Cell 153 2013 193 205
    • (2013) Cell , vol.153 , pp. 193-205
    • Zemach, A.1    Kim, M.Y.2    Hsieh, P.H.3    Coleman-Derr, D.4    Eshed-Williams, L.5    Thao, K.6    Harmer, S.L.7    Zilberman, D.8
  • 37
    • 84866117758 scopus 로고    scopus 로고
    • DDR complex facilitates global association of RNA polymerase v to promoters and evolutionarily young transposons
    • X. Zhong, C.J. Hale, J.A. Law, L.M. Johnson, S. Feng, A. Tu, and S.E. Jacobsen DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons Nat. Struct. Mol. Biol. 19 2012 870 875
    • (2012) Nat. Struct. Mol. Biol. , vol.19 , pp. 870-875
    • Zhong, X.1    Hale, C.J.2    Law, J.A.3    Johnson, L.M.4    Feng, S.5    Tu, A.6    Jacobsen, S.E.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.