CDC5, a DNA binding protein, positively regulates posttranscriptional processing and/or transcription of primary microRNA transcripts

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 43, 2013, Pages 17588-17593

  Zhang, Shuxin ^a   Xie, Meng ^a   Ren, Guodong ^a   Yu, Bin ^a  

^a UNIVERSITY OF NEBRASKA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CDC5 PROTEIN; DICER; DICER LIKE1 COMPLEX; DNA BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE II; MICRORNA; UNCLASSIFIED DRUG;

ADAPTATION; ARABIDOPSIS; ARTICLE; BIOGENESIS; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN INTERACTION; RNA PROCESSING; RNA TRANSCRIPTION; TRANSCRIPTION REGULATION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL CYCLE PROTEINS; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, PLANT; MICRORNAS; MICROSCOPY, CONFOCAL; MUTATION; PLANT LEAVES; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RIBONUCLEASE III; RNA POLYMERASE II; RNA PROCESSING, POST-TRANSCRIPTIONAL; TOBACCO;

EID: 84886386019     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1310644110     Document Type: Article

References (39)

1. Bartel DP (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116(2):281-297.
2. Chen X (2005) MicroRNA biogenesis and function in plants. FEBS Lett 579(26): 5923-5931.
3. Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136(4): 669-687.
4. Vazquez F (2006) Arabidopsis endogenous small RNAs: Highways and byways. Trends Plant Sci 11(9):460-468.
5. Brodersen P, Voinnet O (2006) The diversity of RNA silencing pathways in plants. Trends Genet 22(5):268-280.
6. Herr AJ, Baulcombe DC (2004) RNA silencing pathways in plants. Cold Spring Harb Symp Quant Biol 69:363-370.
7. Kim YJ, et al. (2011) The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana. EMBO J 30(5):814-822.
8. Wang L, et al. (2013) NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis. Plant Cell 25(2):715-727.
9. ParkW, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12(17):1484-1495.
10. Kurihara Y, Watanabe Y (2004) Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. Proc Natl Acad Sci USA 101(34):12753-12758.
11. Song L, Han MH, Lesicka J, Fedoroff N (2007) Arabidopsis primary microRNA processing proteins HYL1 and DCL1 define a nuclear body distinct from the Cajal body. Proc Natl Acad Sci USA 104(13):5437-5442.
12. Manavella PA, et al. (2012) Fast-forward genetics identifies plant CPL phosphatases as regulators of miRNA processing factor HYL1. Cell 151(4):859-870.
13. Ren G, et al. (2012) Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis. Proc Natl Acad Sci USA 109(31):12817-12821.
14. Fujioka Y, Utsumi M, Ohba Y, Watanabe Y (2007) Location of a possible miRNA processing site in SmD3/SmB nuclear bodies in Arabidopsis. Plant Cell Physiol 48(9): 1243-1253.
15. Vazquez F, Gasciolli V, Crété P, Vaucheret H (2004) The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol 14(4):346-351.
16. Han MH, Goud S, Song L, Fedoroff N (2004) The Arabidopsis double-stranded RNAbinding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc Natl Acad Sci USA 101(4):1093-1098.
17. Yang L, Liu Z, Lu F, Dong A, Huang H (2006) SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis. Plant J 47(6):841-850.
18. Lobbes D, Rallapalli G, Schmidt DD, Martin C, Clarke J (2006) SERRATE: A new player on the plant microRNA scene. EMBO Rep 7(10):1052-1058.
19. Dong Z, Han MH, Fedoroff N (2008) The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1. Proc Natl Acad Sci USA 105(29): 9970-9975.
20. Yu B, et al. (2008) The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proc Natl Acad Sci USA 105(29):10073-10078.
21. Gregory BD, et al. (2008) A link between RNA metabolism and silencing affecting Arabidopsis development. Dev Cell 14(6):854-866.
22. Laubinger S, et al. (2008) Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proc Natl Acad Sci USA 105(25):8795-8800.
23. Wu X, et al. (2013) A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis. Cell Res 23(5):645-657.
24. Zhan X, et al. (2012) Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proc Natl Acad Sci USA 109(44):18198-18203.
25. Ohi R, et al. (1998) Myb-related Schizosaccharomyces pombe cdc5p is structurally and functionally conserved in eukaryotes. Mol Cell Biol 18(7):4097-4108.
26. Ohi R, et al. (1994) The Schizosaccharomyces pombe cdc5+ gene encodes an essential protein with homology to c-Myb. EMBO J 13(2):471-483.
27. Hirayama T, Shinozaki K (1996) A cdc5+ homolog of a higher plant, Arabidopsis thaliana. Proc Natl Acad Sci USA 93(23):13371-13376.
28. Bernstein HS, Coughlin SR (1998) A mammalian homolog of fission yeast Cdc5 regulates G2 progression and mitotic entry. J Biol Chem 273(8):4666-4671.
29. Burns CG, Ohi R, Krainer AR, Gould KL (1999) Evidence that Myb-related CDC5 proteins are required for pre-mRNA splicing. Proc Natl Acad Sci USA 96(24):13789-13794.
30. McDonald WH, Ohi R, Smelkova N, Frendewey D, Gould KL (1999) Myb-related fission yeast cdc5p is a component of a 40S snRNP-containing complex and is essential for pre-mRNA splicing. Mol Cell Biol 19(8):5352-5362.
31. Palma K, et al. (2007) Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms. Genes Dev 21(12): 1484-1493.
32. Lin Z, et al. (2007) AtCDC5 regulates the G2 to M transition of the cell cycle and is critical for the function of Arabidopsis shoot apical meristem. Cell Res 17(9):815-828.
33. Jacobsen SE, Running MP, Meyerowitz EM (1999) Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems. Development 126(23):5231-5243.
34. Lu C, Fedoroff N (2000) A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin. Plant Cell 12(12):2351-2366.
35. Qi Y, Denli AM, Hannon GJ (2005) Biochemical specialization within Arabidopsis RNA silencing pathways. Mol Cell 19(3):421-428.
36. Ghosh I, Hamilton AD, Regan L (2000) Antiparallel leucine zipper-directed protein reassembly: Application to the green fluorescent protein. J Am Chem Soc 122(23): 5658-5659.
37. Machida S, Yuan YA (2013) Crystal structure of Arabidopsis thaliana Dawdle forkhead-associated domain reveals a conserved phospho-threonine recognition cleft for dicer-like 1 binding. Mol Plant 6(4):1290-1300.
38. Liu C, Axtell MJ, Fedoroff NV (2012) The helicase and RNaseIIIa domains of Arabidopsis DCL1 modulate catalytic parameters during microRNA biogenesis. Plant Physiol 159(2):748-758.
39. Lau PW, et al. (2012) The molecular architecture of human Dicer. Nat Struct Mol Biol 19(4):436-440.