-
1
-
-
0002075936
-
Retrotransposons, Endogenous Retroviruses, and the Evolution of Retroelements
-
Coffin, J.M., Hughes, S.H., Varmus, H.E., Eds.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, USA
-
Boeke, J.D.; Stoye, J.S. Retrotransposons, Endogenous Retroviruses, and the Evolution of Retroelements. In Retroviruses; Coffin, J.M., Hughes, S.H., Varmus, H.E., Eds.; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, USA, 1997; pp. 343–435.
-
(1997)
Retroviruses
, pp. 343-435
-
-
Boeke, J.D.1
Stoye, J.S.2
-
2
-
-
33750341578
-
The Evolutionary Dynamics of Human Endogenous Retroviral Families
-
Bannert, N.; Kurth, R. The Evolutionary Dynamics of Human Endogenous Retroviral Families. Annu. Rev. Genomics Hum. Genet. 2006, 7, 149–173.
-
(2006)
Annu. Rev. Genomics Hum. Genet
, vol.7
, pp. 149-173
-
-
Bannert, N.1
Kurth, R.2
-
3
-
-
58149507192
-
Effects of Retroviruses on Host Genome Function. Annu
-
Jern, P.; Coffin, J.M. Effects of Retroviruses on Host Genome Function. Annu. Rev. Genet. 2008, 42, 709–732.
-
(2008)
Rev. Genet
, vol.42
, pp. 709-732
-
-
Jern, P.1
Coffin, J.M.2
-
4
-
-
1242319532
-
Human Endogenous Retrovirus K Solo-Ltr Formation and Insertional Polymorphisms: Implications for Human and Viral Evolution
-
Hughes, J.F.; Coffin, J.M. Human Endogenous Retrovirus K Solo-Ltr Formation and Insertional Polymorphisms: Implications for Human and Viral Evolution. Proc. Natl. Acad. Sci. USA 2004, 101, 1668–1672.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1668-1672
-
-
Hughes, J.F.1
Coffin, J.M.2
-
5
-
-
80455158263
-
Identification, Characterization, and Comparative Genomic Distribution of the Herv-K (Hml-2) Group of Human Endogenous Retroviruses
-
Subramanian, R.P.; Wildschutte, J.H.; Russo, C.; Coffin, J.M. Identification, Characterization, and Comparative Genomic Distribution of the Herv-K (Hml-2) Group of Human Endogenous Retroviruses. Retrovirology 2011, 8, e90.
-
(2011)
Retrovirology
, vol.8
-
-
Subramanian, R.P.1
Wildschutte, J.H.2
Russo, C.3
Coffin, J.M.4
-
6
-
-
25144501550
-
Genomewide Screening Reveals High Levels of Insertional Polymorphism in the Human Endogenous Retrovirus Family Herv-K(Hml2): Implications for Present-Day Activity
-
Belshaw, R.; Dawson, A.L.; Woolven-Allen, J.; Redding, J.; Burt, A.; Tristem, M. Genomewide Screening Reveals High Levels of Insertional Polymorphism in the Human Endogenous Retrovirus Family Herv-K(Hml2): Implications for Present-Day Activity. J. Virol. 2005, 79, 12507–12514.
-
(2005)
J. Virol
, vol.79
, pp. 12507-12514
-
-
Belshaw, R.1
Dawson, A.L.2
Woolven-Allen, J.3
Redding, J.4
Burt, A.5
Tristem, M.6
-
7
-
-
84908001337
-
Unfixed Endogenous Retroviral Insertions in the Human Population
-
Marchi, E.; Kanapin, A.; Magiorkinis, G.; Belshaw, R. Unfixed Endogenous Retroviral Insertions in the Human Population. J. Virol. 2014, 88, 9529–9537.
-
(2014)
J. Virol
, vol.88
, pp. 9529-9537
-
-
Marchi, E.1
Kanapin, A.2
Magiorkinis, G.3
Belshaw, R.4
-
8
-
-
0021952546
-
A New Class of Endogenous Human Retroviral Genomes
-
Callahan, R.; Chiu, I.M.; Wong, J.F.; Tronick, S.R.; Roe, B.A.; Aaronson, S.A.; Schlom, J. A New Class of Endogenous Human Retroviral Genomes. Science 1985, 228, 1208–1211.
-
(1985)
Science
, vol.228
, pp. 1208-1211
-
-
Callahan, R.1
Chiu, I.M.2
Wong, J.F.3
Tronick, S.R.4
Roe, B.A.5
Aaronson, S.A.6
Schlom, J.7
-
9
-
-
0023834895
-
Expression of Human Sequences Related to Those of Mouse Mammary Tumor Virus
-
Franklin, G.C.; Chretien, S.; Hanson, I.M.; Rochefort, H.; May, F.E.B.; Westley, B.R. Expression of Human Sequences Related to Those of Mouse Mammary Tumor Virus. J. Virol. 1988, 62, 1203–1210.
-
(1988)
J. Virol
, vol.62
, pp. 1203-1210
-
-
Franklin, G.C.1
Chretien, S.2
Hanson, I.M.3
Rochefort, H.4
May, F.5
Westley, B.R.6
-
10
-
-
0000299781
-
Some Possible Effects of Nursing on the Mammary Gland Tumor Incidence in Mice
-
Bittner, J.J. Some Possible Effects of Nursing on the Mammary Gland Tumor Incidence in Mice. Science 1936, 84, 162.
-
(1936)
Science
, vol.84
, pp. 162
-
-
Bittner, J.J.1
-
11
-
-
0027244861
-
Evidence That Herv-K Is the Endogenous Retrovirus Sequence That Codes for the Human Teratocarcinoma-Derived Retrovirus Htdv
-
Boller, K.; Konig, H.; Sauter, M.; Mueller-Lantzsch, N.; Lower, R.; Lower, J.; Kurth, R. Evidence That Herv-K Is the Endogenous Retrovirus Sequence That Codes for the Human Teratocarcinoma-Derived Retrovirus Htdv. Virology 1993, 196, 349–353.
-
(1993)
Virology
, vol.196
, pp. 349-353
-
-
Boller, K.1
Konig, H.2
Sauter, M.3
Mueller-Lantzsch, N.4
Lower, R.5
Lower, J.6
Kurth, R.7
-
12
-
-
0035112583
-
Phenotypic Heterogeneity of Human Endogenous Retrovirus Particles Produced by Teratocarcinoma Cell Lines
-
Bieda, K.; Hoffmann, A.; Boller, K. Phenotypic Heterogeneity of Human Endogenous Retrovirus Particles Produced by Teratocarcinoma Cell Lines. J. Gen. Virol. 2001, 82, 591–596.
-
(2001)
J. Gen. Virol
, vol.82
, pp. 591-596
-
-
Bieda, K.1
Hoffmann, A.2
Boller, K.3
-
13
-
-
53749108111
-
Human Endogenous Retrovirus Family Herv-K(Hml-2) Rna Transcripts Are Selectively Packaged into Retroviral Particles Produced by the Human Germ Cell Tumor Line Tera-1 and Originate Mainly from a Provirus on Chromosome 22q11. 21
-
Ruprecht, K.; Ferreira, H.; Flockerzi, A.; Wahl, S.; Sauter, M.; Mayer, J.; Mueller-Lantzsch, N. Human Endogenous Retrovirus Family Herv-K(Hml-2) Rna Transcripts Are Selectively Packaged into Retroviral Particles Produced by the Human Germ Cell Tumor Line Tera-1 and Originate Mainly from a Provirus on Chromosome 22q11. 21. J. Virol. 2008, 82, 10008–10016.
-
(2008)
J. Virol
, vol.82
, pp. 10008-10016
-
-
Ruprecht, K.1
Ferreira, H.2
Flockerzi, A.3
Wahl, S.4
Sauter, M.5
Mayer, J.6
Mueller-Lantzsch, N.7
-
14
-
-
0021261986
-
Human Teratocarcinomas Cultured in Vitro Produce Unique Retrovirus-Like Viruses
-
Lower, R.; Lower, J.; Frank, H.; Harzmann, R.; Kurth, R. Human Teratocarcinomas Cultured in Vitro Produce Unique Retrovirus-Like Viruses. J. Gen. Virol. 1984, 65, 887–898.
-
(1984)
J. Gen. Virol
, vol.65
, pp. 887-898
-
-
Lower, R.1
Lower, J.2
Frank, H.3
Harzmann, R.4
Kurth, R.5
-
15
-
-
0032961909
-
High Prevalence of Antibodies against Herv-K10 in Patients with Testicular Cancer but Not with Aids
-
Goedert, J.J.; Sauter, M.E.; Jacobson, L.P.; Vessella, R.L.; Hilgartner, M.W.; Leitman, S.F.; Fraser, M.C.; Mueller-Lantzsch, N.G. High Prevalence of Antibodies against Herv-K10 in Patients with Testicular Cancer but Not with Aids. Cancer Epidemiol. Biomark. Prev. 1999, 8, 293–296.
-
(1999)
Cancer Epidemiol. Biomark. Prev
, vol.8
, pp. 293-296
-
-
Goedert, J.J.1
Sauter, M.E.2
Jacobson, L.P.3
Vessella, R.L.4
Hilgartner, M.W.5
Leitman, S.F.6
Fraser, M.C.7
Mueller-Lantzsch, N.G.8
-
16
-
-
0028950010
-
Human Endogenous Retrovirus K10: Expression of Gag Protein and Detection of Antibodies in Patients with Seminomas
-
Sauter, M.; Schommer, S.; Kremmer, E.; Remberger, K.; Dölken, G.; Lemm, I.; Buck, M.; Best, B.; Neumann-Haefelin, D.; Mueller-Lantzsch, N. Human Endogenous Retrovirus K10: Expression of Gag Protein and Detection of Antibodies in Patients with Seminomas. J. Virol. 1995, 69, 414–421.
-
(1995)
J. Virol
, vol.69
, pp. 414-421
-
-
Sauter, M.1
Schommer, S.2
Kremmer, E.3
Remberger, K.4
Dölken, G.5
Lemm, I.6
Buck, M.7
Best, B.8
Neumann-Haefelin, D.9
Mueller-Lantzsch, N.10
-
17
-
-
2442595893
-
Herv-K(Hml-2) Gag/Env Antibodies as Indicator for Therapy Effect in Patients with Germ Cell Tumors
-
Kleiman, A.; Senyuta, N.; Tryakin, A.; Sauter, M.; Karseladze, A.; Tjulandin, S.; Gurtsevitch, V.; Mueller-Lantzsch, N. Herv-K(Hml-2) Gag/Env Antibodies as Indicator for Therapy Effect in Patients with Germ Cell Tumors. Int. J. Cancer 2004, 110, 459–461.
-
(2004)
Int. J. Cancer
, vol.110
, pp. 459-461
-
-
Kleiman, A.1
Senyuta, N.2
Tryakin, A.3
Sauter, M.4
Karseladze, A.5
Tjulandin, S.6
Gurtsevitch, V.7
Mueller-Lantzsch, N.8
-
18
-
-
73549114239
-
Beneficial and Detrimental Effects of Human Endogenous Retroviruses
-
Kurth, R.; Bannert, N. Beneficial and Detrimental Effects of Human Endogenous Retroviruses. Int. J. Cancer 2010, 126, 306–314.
-
(2010)
Int. J. Cancer
, vol.126
, pp. 306-314
-
-
Kurth, R.1
Bannert, N.2
-
19
-
-
0033955673
-
A Rev-Like Nes Mediates Cytoplasmic Localization of Herv-K Corf
-
Boese, A.; Sauter, M.; Mueller-Lantzsch, N. A Rev-Like Nes Mediates Cytoplasmic Localization of Herv-K Corf. FEBS Lett. 2000, 468, 65–67.
-
(2000)
FEBS Lett
, vol.468
, pp. 65-67
-
-
Boese, A.1
Sauter, M.2
Mueller-Lantzsch, N.3
-
20
-
-
84891095297
-
Herv-K(Hml-2), the Best Preserved Family of Hervs
-
Hohn, O.; Hanke, K.; Bannert, N. Herv-K(Hml-2), the Best Preserved Family of Hervs: Endogenization, Expression, and Implications in Health and Disease. Front. Oncol. 2013, 3, 246.
-
(2013)
Endogenization, Expression, and Implications in Health and Disease. Front. Oncol.
, vol.3
, pp. 246
-
-
Hohn, O.1
Hanke, K.2
Bannert, N.3
-
21
-
-
0029918146
-
Human Endogenous Retrovirus Expression and Reverse Transcriptase Activity in the T47d Mammary Carcinoma Cell Line
-
Patience, C.; Simpson, G.R.; Colletta, A.A.; Welch, H.M.; Weiss, R.A.; Boyd, M.T. Human Endogenous Retrovirus Expression and Reverse Transcriptase Activity in the T47d Mammary Carcinoma Cell Line. J. Virol. 1996, 70, 2654–2657.
-
(1996)
J. Virol
, vol.70
, pp. 2654-2657
-
-
Patience, C.1
Simpson, G.R.2
Colletta, A.A.3
Welch, H.M.4
Weiss, R.A.5
Boyd, M.T.6
-
22
-
-
0030840761
-
Type 1 Herv-K Genome Is Spliced into Subgenomic Transcripts in the Human Breast Tumor Cell Line T47d
-
Etkind, P.R.; Lumb, K.; Du, J.; Racevskis, J. Type 1 Herv-K Genome Is Spliced into Subgenomic Transcripts in the Human Breast Tumor Cell Line T47d. Virology 1997, 234, 304–308.
-
(1997)
Virology
, vol.234
, pp. 304-308
-
-
Etkind, P.R.1
Lumb, K.2
Du, J.3
Racevskis, J.4
-
23
-
-
0034910214
-
Expression of Human Endogenous Retrovirus K Envelope Transcripts in Human Breast Cancer
-
Wang-Johanning, F.; Frost, A.R.; Johanning, G.L.; Khazaeli, M.B.; LoBuglio, A.F.; Shaw, D.R.; Strong, T.V. Expression of Human Endogenous Retrovirus K Envelope Transcripts in Human Breast Cancer. Clin. Cancer Res. 2001, 7, 1553–1560.
-
(2001)
Clin. Cancer Res
, vol.7
, pp. 1553-1560
-
-
Wang-Johanning, F.1
Frost, A.R.2
Johanning, G.L.3
Khazaeli, M.B.4
Lobuglio, A.F.5
Shaw, D.R.6
Strong, T.V.7
-
24
-
-
0037435038
-
Quantitation of Herv-K Env Gene Expression and Splicing in Human Breast Cancer
-
Wang-Johanning, F.; Frost, A.R.; Jian, B.; Epp, L.; Lu, D.W.; Johanning, G.L. Quantitation of Herv-K Env Gene Expression and Splicing in Human Breast Cancer. Oncogene 2003, 22, 1528–1535.
-
(2003)
Oncogene
, vol.22
, pp. 1528-1535
-
-
Wang-Johanning, F.1
Frost, A.R.2
Jian, B.3
Epp, L.4
Lu, D.W.5
Johanning, G.L.6
-
25
-
-
48649083286
-
Human Endogenous Retrovirus K Triggers an Antigen-Specific Immune Response in Breast Cancer Patients
-
Wang-Johanning, F.; Radvanyi, L.; Rycaj, K.; Plummer, J.B.; Yan, P.; Sastry, K.J.; Piyathilake, C.J.; Hunt, K.K.; Johanning, G.L. Human Endogenous Retrovirus K Triggers an Antigen-Specific Immune Response in Breast Cancer Patients. Cancer Res. 2008, 68, 5869–5877.
-
(2008)
Cancer Res
, vol.68
, pp. 5869-5877
-
-
Wang-Johanning, F.1
Radvanyi, L.2
Rycaj, K.3
Plummer, J.B.4
Yan, P.5
Sastry, K.J.6
Piyathilake, C.J.7
Hunt, K.K.8
Johanning, G.L.9
-
26
-
-
84863177511
-
Immunotherapeutic Potential of Anti-Human Endogenous Retrovirus-K Envelope Protein Antibodies in Targeting Breast Tumors
-
Wang-Johanning, F.; Rycaj, K.; Plummer, J.B.; Li, M.; Yin, B.; Frerich, K.; Garza, J.G.; Shen, J.; Lin, K.; Yan, P.; et al. Immunotherapeutic Potential of Anti-Human Endogenous Retrovirus-K Envelope Protein Antibodies in Targeting Breast Tumors. J. Natl. Cancer Inst. 2012, 104, 189–210.
-
(2012)
J. Natl. Cancer Inst.
, vol.104
, pp. 189-210
-
-
Wang-Johanning, F.1
Rycaj, K.2
Plummer, J.B.3
Li, M.4
Yin, B.5
Frerich, K.6
Garza, J.G.7
Shen, J.8
Lin, K.9
Yan, P.10
-
27
-
-
33746152795
-
Expression of the Human Endogenous Retrovirus-K Transmembrane Envelope, Rec and Np9 Proteins in Melanomas and Melanoma Cell Lines
-
Buscher, K.; Hahn, S.; Hofmann, M.; Trefzer, U.; Ozel, M.; Sterry, W.; Lower, J.; Lower, R.; Kurth, R.; Denner, J. Expression of the Human Endogenous Retrovirus-K Transmembrane Envelope, Rec and Np9 Proteins in Melanomas and Melanoma Cell Lines. Melanoma Res. 2006, 16, 223–234.
-
(2006)
Melanoma Res
, vol.16
, pp. 223-234
-
-
Buscher, K.1
Hahn, S.2
Hofmann, M.3
Trefzer, U.4
Ozel, M.5
Sterry, W.6
Lower, J.7
Lower, R.8
Kurth, R.9
Denner, J.10
-
28
-
-
9144273204
-
An Endogenous Retrovirus Derived from Human Melanoma Cells
-
Muster, T.; Waltenberger, A.; Grassauer, A.; Hirschl, S.; Caucig, P.; Romirer, I.; Fodinger, D.; Seppele, H.; Schanab, O.; Magin-Lachmann, C.; et al. An Endogenous Retrovirus Derived from Human Melanoma Cells. Cancer Res. 2003, 63, 8735–8741.
-
(2003)
Cancer Res
, vol.63
, pp. 8735-8741
-
-
Muster, T.1
Waltenberger, A.2
Grassauer, A.3
Hirschl, S.4
Caucig, P.5
Romirer, I.6
Fodinger, D.7
Seppele, H.8
Schanab, O.9
Magin-Lachmann, C.10
-
29
-
-
33746159892
-
A New Real-Time-Rt-Pcr for Quantitation of Human Endogenous Retroviruses Type K (Herv-K) Rna Load in Plasma Samples: Increased Herv-K Rna Titers in Hiv-1 Patients with Haart Non-Suppressive Regimens
-
Contreras-Galindo, R.; Gonzalez, M.; Almodovar-Camacho, S.; Gonzalez-Ramirez, S.; Lorenzo, E.; Yamamura, Y. A New Real-Time-Rt-Pcr for Quantitation of Human Endogenous Retroviruses Type K (Herv-K) Rna Load in Plasma Samples: Increased Herv-K Rna Titers in Hiv-1 Patients with Haart Non-Suppressive Regimens. J. Virol. Methods 2006, 136, 51–57.
-
(2006)
J. Virol. Methods
, vol.136
, pp. 51-57
-
-
Contreras-Galindo, R.1
Gonzalez, M.2
Almodovar-Camacho, S.3
Gonzalez-Ramirez, S.4
Lorenzo, E.5
Yamamura, Y.6
-
30
-
-
33846252381
-
Detection of Herv-K(Hml-2) Viral Rna in Plasma of Hiv Type 1-Infected Individuals. AIDS Res
-
Contreras-Galindo, R.; Kaplan, M.H.; Markovitz, D.M.; Lorenzo, E.; Yamamura, Y. Detection of Herv-K(Hml-2) Viral Rna in Plasma of Hiv Type 1-Infected Individuals. AIDS Res. Hum. Retrovir. 2006, 22, 979–984.
-
(2006)
Hum. Retrovir
, vol.22
, pp. 979-984
-
-
Contreras-Galindo, R.1
Kaplan, M.H.2
Markovitz, D.M.3
Lorenzo, E.4
Yamamura, Y.5
-
31
-
-
33846829834
-
Hiv-1 Infection Increases the Expression of Human Endogenous Retroviruses Type K (Herv-K) in Vitro
-
Contreras-Galindo, R.; Lopez, P.; Velez, R.; Yamamura, Y. Hiv-1 Infection Increases the Expression of Human Endogenous Retroviruses Type K (Herv-K) in Vitro. AIDS Res. Hum. Retrovir. 2007, 23, 116–122.
-
(2007)
AIDS Res. Hum. Retrovir
, vol.23
, pp. 116-122
-
-
Contreras-Galindo, R.1
Lopez, P.2
Velez, R.3
Yamamura, Y.4
-
32
-
-
84864686306
-
Human Endogenous Retrovirus Expression is Inversely Associated with Chronic Immune Activation in Hiv-1 Infection
-
Ormsby, C.E.; Sengupta, D.; Tandon, R.; Deeks, S.G.; Martin, J.N.; Jones, R.B.; Ostrowski, M.A.; Garrison, K.E.; Vazquez-Perez, J.A.; Reyes-Teran, G.; et al. Human Endogenous Retrovirus Expression is Inversely Associated with Chronic Immune Activation in Hiv-1 Infection. PLoS One 2012, 7, e41021.
-
(2012)
Plos One
, vol.7
-
-
Ormsby, C.E.1
Sengupta, D.2
Tandon, R.3
Deeks, S.G.4
Martin, J.N.5
Jones, R.B.6
Ostrowski, M.A.7
Garrison, K.E.8
Vazquez-Perez, J.A.9
Reyes-Teran, G.10
-
33
-
-
84855928953
-
Characterization of Human Endogenous Retroviral Elements in the Blood of Hiv-1-Infected Individuals
-
Contreras-Galindo, R.; Kaplan, M.H.; Contreras-Galindo, A.C.; Gonzalez-Hernandez, M.J.; Ferlenghi, I.; Giusti, F.; Lorenzo, E.; Gitlin, S.D.; Dosik, M.H.; Yamamura, Y.; et al. Characterization of Human Endogenous Retroviral Elements in the Blood of Hiv-1-Infected Individuals. J. Virol. 2012, 86, 262–276.
-
(2012)
J. Virol
, vol.86
, pp. 262-276
-
-
Contreras-Galindo, R.1
Kaplan, M.H.2
Contreras-Galindo, A.C.3
Gonzalez-Hernandez, M.J.4
Ferlenghi, I.5
Giusti, F.6
Lorenzo, E.7
Gitlin, S.D.8
Dosik, M.H.9
Yamamura, Y.10
-
34
-
-
84906971869
-
HIV-1 Infection Leads to Increased Transcription of Herv-K (Hml-2) Proviruses in vivo but Not to Increased Virion Production
-
in press
-
Bhardwaj, N.; Maldarelli, F.; Mellors, J.; Coffin, J.M. HIV-1 Infection Leads to Increased Transcription of Herv-K (Hml-2) Proviruses in vivo but Not to Increased Virion Production. J. Virol. 2014, in press.
-
(2014)
J. Virol
-
-
Bhardwaj, N.1
Maldarelli, F.2
Mellors, J.3
Coffin, J.M.4
-
35
-
-
19944428265
-
Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis
-
Palmer, S.; Kearney, M.; Maldarelli, F.; Halvas, E.K.; Bixby, C.J.; Bazmi, H.; Rock, D.; Falloon, J.; Davey, R.T., Jr.; Dewar, R.L.; et al. Multiple, Linked Human Immunodeficiency Virus Type 1 Drug Resistance Mutations in Treatment-Experienced Patients Are Missed by Standard Genotype Analysis. J. Clin. Microbiol. 2005, 43, 406–413.
-
(2005)
J. Clin. Microbiol
, vol.43
, pp. 406-413
-
-
Palmer, S.1
Kearney, M.2
Maldarelli, F.3
Halvas, E.K.4
Bixby, C.J.5
Bazmi, H.6
Rock, D.7
Falloon, J.8
Davey, R.T.9
Dewar, R.L.10
-
36
-
-
84871215627
-
Herv-H Rna is Abundant in Human Embryonic Stem Cells and a Precise Marker for Pluripotency
-
Santoni, F.A.; Guerra, J.; Luban, J. Herv-H Rna is Abundant in Human Embryonic Stem Cells and a Precise Marker for Pluripotency. Retrovirology 2012, 9, 111.
-
(2012)
Retrovirology
, vol.9
, pp. 111
-
-
Santoni, F.A.1
Guerra, J.2
Luban, J.3
-
37
-
-
84888023264
-
Comprehensive Analysis of Human Endogenous Retrovirus Group Herv-W Locus Transcription in Multiple Sclerosis Brain Lesions by High-Throughput Amplicon Sequencing
-
Schmitt, K.; Richter, C.; Backes, C.; Meese, E.; Ruprecht, K.; Mayer, J. Comprehensive Analysis of Human Endogenous Retrovirus Group Herv-W Locus Transcription in Multiple Sclerosis Brain Lesions by High-Throughput Amplicon Sequencing. J. Virol. 2013, 87, 13837–13852.
-
(2013)
J. Virol
, vol.87
, pp. 13837-13852
-
-
Schmitt, K.1
Richter, C.2
Backes, C.3
Meese, E.4
Ruprecht, K.5
Mayer, J.6
-
38
-
-
84899866389
-
Hiv-1 Interacts with Human Endogenous Retrovirus K (Hml-2) Envelopes Derived from Human Primary Lymphocytes
-
Brinzevich, D.; Young, G.R.; Sebra, R.; Ayllon, J.; Maio, S.M.; Deikus, G.; Chen, B.K.; Fernandez-Sesma, A.; Simon, V.; Mulder, L.C. Hiv-1 Interacts with Human Endogenous Retrovirus K (Hml-2) Envelopes Derived from Human Primary Lymphocytes. J. Virol. 2014, 88, 6213–6223.
-
(2014)
J. Virol
, vol.88
, pp. 6213-6223
-
-
Brinzevich, D.1
Young, G.R.2
Sebra, R.3
Ayllon, J.4
Maio, S.M.5
Deikus, G.6
Chen, B.K.7
Fernandez-Sesma, A.8
Simon, V.9
Mulder, L.C.10
-
39
-
-
84904871470
-
Regulation of the Herv-K (Hml-2) Transcriptome by the HIV-1 Tat Protein
-
Gonzalez-Hernandez, M.J.; Cavalcoli, J.D.; Sartor, M.A.; Contreras-Galindo, R.; Meng, F.; Dai, M.; Dube, D.; Saha, A.K.; Gitlin, S.D.; Omenn, G.S.; et al. Regulation of the Herv-K (Hml-2) Transcriptome by the HIV-1 Tat Protein. J. Virol. 2014, doi:10.1128/JVI.00556-14.
-
(2014)
J. Virol
-
-
Gonzalez-Hernandez, M.J.1
Cavalcoli, J.D.2
Sartor, M.A.3
Contreras-Galindo, R.4
Meng, F.5
Dai, M.6
Dube, D.7
Saha, A.K.8
Gitlin, S.D.9
Omenn, G.S.10
-
40
-
-
0030586754
-
Endogenous D-Type (Herv-K) Related Sequences Are Packaged into Retroviral Particles in the Placenta and Possess Open Reading Frames for Reverse Transcriptase
-
Simpson, G.R.; Patience, C.; Löwer, R.; Tönjes, R.R.; Moore, H.D.M.; Weiss, R.A.; Boyd, M.T. Endogenous D-Type (Herv-K) Related Sequences Are Packaged into Retroviral Particles in the Placenta and Possess Open Reading Frames for Reverse Transcriptase. Virology 1996, 222, 451–456.
-
(1996)
Virology
, vol.222
, pp. 451-456
-
-
Simpson, G.R.1
Patience, C.2
Löwer, R.3
Tönjes, R.R.4
Moore, H.5
Weiss, R.A.6
Boyd, M.T.7
-
41
-
-
0029073827
-
Restricted Expression of New Herv-K Members in Human Teratocarcinoma Cells
-
Li, M.D.; Bronson, D.L.; Lemke, T.D.; Faras, A.J. Restricted Expression of New Herv-K Members in Human Teratocarcinoma Cells. Virology 1995, 208, 733–741.
-
(1995)
Virology
, vol.208
, pp. 733-741
-
-
Li, M.D.1
Bronson, D.L.2
Lemke, T.D.3
Faras, A.J.4
-
42
-
-
84905049901
-
Trimmomatic: A Flexible Trimmer for Illumina Sequence Data
-
Bolger, A.M.; Lohse, M.; Usadel, B. Trimmomatic: A Flexible Trimmer for Illumina Sequence Data. Bioinformatics 2014, 30, 2114–2120.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
43
-
-
84859210032
-
Fast Gapped-Read Alignment with Bowtie 2
-
Langmead, B.; Salzberg, S.L. Fast Gapped-Read Alignment with Bowtie 2. Nat. Methods 2012, 9, 357–359.
-
(2012)
Nat. Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
44
-
-
84876996918
-
Tophat2: Accurate Alignment of Transcriptomes in the Presence of Insertions, Deletions and Gene Fusions
-
Kim, D.; Pertea, G.; Trapnell, C.; Pimentel, H.; Kelley, R.; Salzberg, S.L. Tophat2: Accurate Alignment of Transcriptomes in the Presence of Insertions, Deletions and Gene Fusions. Genome Biol. 2013, 14, R36.
-
(2013)
Genome Biol
, vol.14
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
-
45
-
-
68549104404
-
Genome Project Data Processing, S. The Sequence Alignment/Map Format and Samtools
-
Li, H.; Handsaker, B.; Wysoker, A.; Fennell, T.; Ruan, J.; Homer, N.; Marth, G.; Abecasis, G.; Durbin, R.; Genome Project Data Processing, S. The Sequence Alignment/Map Format and Samtools. Bioinformatics 2009, 25, 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
46
-
-
79952709611
-
Improving Rna-Seq Expression Estimates by Correcting for Fragment Bias
-
Roberts, A.; Trapnell, C.; Donaghey, J.; Rinn, J.L.; Pachter, L. Improving Rna-Seq Expression Estimates by Correcting for Fragment Bias. Genome Biol. 2011, 12, R22.
-
(2011)
Genome Biol
, vol.12
-
-
Roberts, A.1
Trapnell, C.2
Donaghey, J.3
Rinn, J.L.4
Pachter, L.5
-
47
-
-
46249106990
-
Mapping and Quantifying Mammalian Transcriptomes by Rna-Seq
-
Mortazavi, A.; Williams, B.A.; McCue, K.; Schaeffer, L.; Wold, B. Mapping and Quantifying Mammalian Transcriptomes by Rna-Seq. Nat. Methods 2008, 5, 621–628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
48
-
-
78651310799
-
Database Resources of the National Center for Biotechnology Information
-
Sayers, E.W.; Barrett, T.; Benson, D.A.; Bolton, E.; Bryant, S.H.; Canese, K.; Chetvernin, V.; Church, D.M.; DiCuccio, M.; Federhen, S.; et al. Database Resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2011, 39, D38–D51.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D38-D51
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
Canese, K.6
Chetvernin, V.7
Church, D.M.8
Dicuccio, M.9
Federhen, S.10
-
49
-
-
84875634162
-
Integrative Genomics Viewer (Igv): High-Performance Genomics Data Visualization and Exploration. Brief
-
Thorvaldsdottir, H.; Robinson, J.T.; Mesirov, J.P. Integrative Genomics Viewer (Igv): High-Performance Genomics Data Visualization and Exploration. Brief. Bioinform. 2013, 14, 178–192.
-
(2013)
Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
50
-
-
0036079158
-
The Human Genome Browser at Ucsc
-
Kent, W.J.; Sugnet, C.W.; Furey, T.S.; Roskin, K.M.; Pringle, T.H.; Zahler, A.M.; Haussler, D. The Human Genome Browser at Ucsc. Genome Res. 2002, 12, 996–1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
51
-
-
84857145150
-
Art: A Next-Generation Sequencing Read Simulator
-
Huang, W.; Li, L.; Myers, J.R.; Marth, G.T. Art: A Next-Generation Sequencing Read Simulator. Bioinformatics 2012, 28, 593–594.
-
(2012)
Bioinformatics
, vol.28
, pp. 593-594
-
-
Huang, W.1
Li, L.2
Myers, J.R.3
Marth, G.T.4
-
52
-
-
84890330527
-
Mega6: Molecular Evolutionary Genetics Analysis Version 6. 0
-
Tamura, K.; Stecher, G.; Peterson, D.; Filipski, A.; Kumar, S. Mega6: Molecular Evolutionary Genetics Analysis Version 6. 0. Mol. Biol. Evol. 2013, 30, 2725–2729.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
53
-
-
0347755531
-
The Ucsc Table Browser Data Retrieval Tool
-
Karolchik, D.; Hinrichs, A.S.; Furey, T.S.; Roskin, K.M.; Sugnet, C.W.; Haussler, D.; Kent, W.J. The Ucsc Table Browser Data Retrieval Tool. Nucleic Acids Res. 2004, 32, D493–D496.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D493-D496
-
-
Karolchik, D.1
Hinrichs, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
Haussler, D.6
Kent, W.J.7
-
54
-
-
84865022311
-
Primer3—New Capabilities and Interfaces
-
Untergasser, A.; Cutcutache, I.; Koressaar, T.; Ye, J.; Faircloth, B.C.; Remm, M.; Rozen, S.G. Primer3—New Capabilities and Interfaces. Nucleic Acids Res. 2012, 40, e115.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Untergasser, A.1
Cutcutache, I.2
Koressaar, T.3
Ye, J.4
Faircloth, B.C.5
Remm, M.6
Rozen, S.G.7
-
55
-
-
0023651425
-
A Novel Human Nonviral Retroposon Derived from an Endogenous Retrovirus
-
Ono, M.; Kawakami, M.; Takezawa, T. A Novel Human Nonviral Retroposon Derived from an Endogenous Retrovirus. Nucleic Acids Res. 1987, 15, 8725–8737.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8725-8737
-
-
Ono, M.1
Kawakami, M.2
Takezawa, T.3
-
56
-
-
50149083663
-
Hypermutation of an Ancient Human Retrovirus by Apobec3g
-
Lee, Y.N.; Malim, M.H.; Bieniasz, P.D. Hypermutation of an Ancient Human Retrovirus by Apobec3g. J. Virol. 2008, 82, 8762–8770.
-
(2008)
J. Virol
, vol.82
, pp. 8762-8770
-
-
Lee, Y.N.1
Malim, M.H.2
Bieniasz, P.D.3
-
57
-
-
0036281673
-
Novel Gene from the Human Endogenous Retrovirus K Expressed in Transformed Cells
-
Armbruester, V.; Sauter, M.; Krautkraemer, E.; Meese, E.; Kleiman, A.; Best, B.; Roemer, K.; Mueller-Lantzsch, N. A Novel Gene from the Human Endogenous Retrovirus K Expressed in Transformed Cells. Clin. Cancer Res. 2002, 8, 1800–1807.
-
(2002)
Clin. Cancer Res
, vol.8
, pp. 1800-1807
-
-
Armbruester, V.1
Sauter, M.2
Krautkraemer, E.3
Meese, E.4
Kleiman, A.5
Best, B.6
Roemer, K.7
Mueller-Lantzsch, N.A.8
-
58
-
-
0028988480
-
Identification of a Rev-Related Protein by Analysis of Spliced Transcripts of the Human Endogenous Retroviruses Htdv/Herv-K
-
Löwer, R.; Tönjes, R.R.; Korbmacher, C.; Kurth, R.; Löwer, J. Identification of a Rev-Related Protein by Analysis of Spliced Transcripts of the Human Endogenous Retroviruses Htdv/Herv-K. J. Virol. 1995, 69, 141–149.
-
(1995)
J. Virol
, vol.69
, pp. 141-149
-
-
Löwer, R.1
Tönjes, R.R.2
Korbmacher, C.3
Kurth, R.4
Löwer, J.5
-
59
-
-
80052978224
-
Integrative Annotation of Human Large Intergenic Noncoding Rnas Reveals Global Properties and Specific Subclasses
-
Cabili, M.N.; Trapnell, C.; Goff, L.; Koziol, M.; Tazon-Vega, B.; Regev, A.; Rinn, J.L. Integrative Annotation of Human Large Intergenic Noncoding Rnas Reveals Global Properties and Specific Subclasses. Genes Dev. 2011, 25, 1915–1927.
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
Rinn, J.L.7
-
60
-
-
84888377162
-
Human-Specific Endogenous Retroviral Insert Serves as an Enhancer for the Schizophrenia-Linked Gene Prodh
-
Suntsova, M.; Gogvadze, E.V.; Salozhin, S.; Gaifullin, N.; Eroshkin, F.; Dmitriev, S.E.; Martynova, N.; Kulikov, K.; Malakhova, G.; Tukhbatova, G.; et al. Human-Specific Endogenous Retroviral Insert Serves as an Enhancer for the Schizophrenia-Linked Gene Prodh. Proc. Natl. Acad. Sci. USA 2013, 110, 19472–19477.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 19472-19477
-
-
Suntsova, M.1
Gogvadze, E.V.2
Salozhin, S.3
Gaifullin, N.4
Eroshkin, F.5
Dmitriev, S.E.6
Martynova, N.7
Kulikov, K.8
Malakhova, G.9
Tukhbatova, G.10
-
61
-
-
2642539950
-
Tissue Specificity of Enhancer and Promoter Activities of a Herv-K(Hml-2) Ltr
-
Ruda, V.M.; Akopov, S.B.; Trubetskoy, D.O.; Manuylov, N.L.; Vetchinova, A.S.; Zavalova, L.L.; Nikolaev, L.G.; Sverdlov, E.D. Tissue Specificity of Enhancer and Promoter Activities of a Herv-K(Hml-2) Ltr. Virus Res. 2004, 104, 11–16.
-
(2004)
Virus Res
, vol.104
, pp. 11-16
-
-
Ruda, V.M.1
Akopov, S.B.2
Trubetskoy, D.O.3
Manuylov, N.L.4
Vetchinova, A.S.5
Zavalova, L.L.6
Nikolaev, L.G.7
Sverdlov, E.D.8
-
62
-
-
84873481763
-
Endogenous Retrovirus-K Promoter: A Landing Strip for Inflammatory Transcription Factors?
-
Manghera, M.; Douville, R.N. Endogenous Retrovirus-K Promoter: A Landing Strip for Inflammatory Transcription Factors? Retrovirology 2013, 10, e16.
-
(2013)
Retrovirology
, vol.10
-
-
Manghera, M.1
Douville, R.N.2
-
63
-
-
79952586736
-
Expression of the Human Endogenous Retrovirus (Herv) Group Hml-2/Herv-K Does Not Depend on Canonical Promoter Elements but Is Regulated by Transcription Factors Sp1 and Sp 3
-
Fuchs, N.V.; Kraft, M.; Tondera, C.; Hanschmann, K.M.; Lower, J.; Lower, R. Expression of the Human Endogenous Retrovirus (Herv) Group Hml-2/Herv-K Does Not Depend on Canonical Promoter Elements but Is Regulated by Transcription Factors Sp1 and Sp 3. J. Virol. 2011, 85, 3436–3448.
-
(2011)
J. Virol
, vol.85
, pp. 3436-3448
-
-
Fuchs, N.V.1
Kraft, M.2
Tondera, C.3
Hanschmann, K.M.4
Lower, J.5
Lower, R.6
-
64
-
-
33644828413
-
Functional Human Endogenous Retroviral Ltr Transcription Start Sites Are Located between the R and U5 Regions
-
Kovalskaya, E.; Buzdin, A.; Gogvadze, E.; Vinogradova, T.; Sverdlov, E. Functional Human Endogenous Retroviral Ltr Transcription Start Sites Are Located between the R and U5 Regions. Virology 2006, 346, 373–378.
-
(2006)
Virology
, vol.346
, pp. 373-378
-
-
Kovalskaya, E.1
Buzdin, A.2
Gogvadze, E.3
Vinogradova, T.4
Sverdlov, E.5
-
65
-
-
55549145080
-
Endogenous Retroviruses and Cancer
-
Ruprecht, K.; Mayer, J.; Sauter, M.; Roemer, K.; Mueller-Lantzsch, N. Endogenous Retroviruses and Cancer. Cell. Mol. Life Sci. 2008, 65, 3366–3382.
-
(2008)
Cell. Mol. Life Sci
, vol.65
, pp. 3366-3382
-
-
Ruprecht, K.1
Mayer, J.2
Sauter, M.3
Roemer, K.4
Mueller-Lantzsch, N.5
-
66
-
-
84855798495
-
Hiv Infection and Herv Expression: A Review
-
Van der Kuyl, A.C. Hiv Infection and Herv Expression: A Review. Retrovirology 2012, 9, e6.
-
(2012)
Retrovirology
, vol.9
, pp. 9
-
-
Van Der Kuyl, A.C.1
-
67
-
-
10644240714
-
Comprehensive Analysis of Human Endogenous Retrovirus Transcriptional Activity in Human Tissues with a Retrovirus-Specific Microarray
-
Seifarth, W.; Frank, O.; Zeilfelder, U.; Spiess, B.; Greenwood, A.D.; Hehlmann, R.; Leib-Mosch, C. Comprehensive Analysis of Human Endogenous Retrovirus Transcriptional Activity in Human Tissues with a Retrovirus-Specific Microarray. J. Virol. 2005, 79, 341–352.
-
(2005)
J. Virol
, vol.79
, pp. 341-352
-
-
Seifarth, W.1
Frank, O.2
Zeilfelder, U.3
Spiess, B.4
Greenwood, A.D.5
Hehlmann, R.6
Leib-Mosch, C.7
-
68
-
-
50549099314
-
Expression Patterns of Transcribed Human Endogenous Retrovirus Herv-K(Hml-2) Loci in Human Tissues and the Need for a Herv Transcriptome Project
-
Flockerzi, A.; Ruggieri, A.; Frank, O.; Sauter, M.; Maldener, E.; Kopper, B.; Wullich, B.; Seifarth, W.; Muller-Lantzsch, N.; Leib-Mosch, C.; et al. Expression Patterns of Transcribed Human Endogenous Retrovirus Herv-K(Hml-2) Loci in Human Tissues and the Need for a Herv Transcriptome Project. BMC Genomics 2008, 9, e354.
-
(2008)
BMC Genomics
, vol.9
-
-
Flockerzi, A.1
Ruggieri, A.2
Frank, O.3
Sauter, M.4
Maldener, E.5
Kopper, B.6
Wullich, B.7
Seifarth, W.8
Muller-Lantzsch, N.9
Leib-Mosch, C.10
-
69
-
-
11144248017
-
Cpg Methylation Directly Regulates Transcriptional Activity of the Human Endogenous Retrovirus Family Herv-K(Hml-2)
-
Lavie, L.; Kitova, M.; Maldener, E.; Meese, E.; Mayer, J. Cpg Methylation Directly Regulates Transcriptional Activity of the Human Endogenous Retrovirus Family Herv-K(Hml-2). J. Virol. 2005, 79, 876–883.
-
(2005)
J. Virol
, vol.79
, pp. 876-883
-
-
Lavie, L.1
Kitova, M.2
Maldener, E.3
Meese, E.4
Mayer, J.5
-
70
-
-
79955686686
-
Identification of the Protease Cleavage Sites in a Reconstituted Gag Polyprotein of an Herv-K(Hml-2) Element
-
George, M.; Schwecke, T.; Beimforde, N.; Hohn, O.; Chudak, C.; Zimmermann, A.; Kurth, R.; Naumann, D.; Bannert, N. Identification of the Protease Cleavage Sites in a Reconstituted Gag Polyprotein of an Herv-K(Hml-2) Element. Retrovirology 2011, 8, e30.
-
(2011)
Retrovirology
, vol.8
-
-
George, M.1
Schwecke, T.2
Beimforde, N.3
Hohn, O.4
Chudak, C.5
Zimmermann, A.6
Kurth, R.7
Naumann, D.8
Bannert, N.9
-
71
-
-
29744442929
-
Identification of a Functional Envelope Protein from the Herv-K Family of Human Endogenous Retroviruses
-
Dewannieux, M.; Blaise, S.; Heidmann, T. Identification of a Functional Envelope Protein from the Herv-K Family of Human Endogenous Retroviruses. J. Virol. 2005, 79, 15573–15577.
-
(2005)
J. Virol
, vol.79
, pp. 15573-15577
-
-
Dewannieux, M.1
Blaise, S.2
Heidmann, T.3
-
72
-
-
20344368389
-
How Retroviruses Select Their Genomes
-
D’Souza, V.; Summers, M.F. How Retroviruses Select Their Genomes. Nat. Rev. Microbiol. 2005, 3, 643–655.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 643-655
-
-
D’Souza, V.1
Summers, M.F.2
-
73
-
-
34249939912
-
Selective and Nonselective Packaging of Cellular Rnas in Retrovirus Particles
-
Rulli, S.J., Jr.; Hibbert, C.S.; Mirro, J.; Pederson, T.; Biswal, S.; Rein, A. Selective and Nonselective Packaging of Cellular Rnas in Retrovirus Particles. J. Virol. 2007, 81, 6623–6631.
-
(2007)
J. Virol
, vol.81
, pp. 6623-6631
-
-
Rulli, S.J.1
Hibbert, C.S.2
Mirro, J.3
Pederson, T.4
Biswal, S.5
Rein, A.6
|