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Volumn 346, Issue 2, 2006, Pages 373-378

Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions

Author keywords

Endogenous retrovirus; HERV K (HML 2); Long terminal repeat; LTR; Promoter; Transcription

Indexed keywords

COMPLEMENTARY DNA; RNA;

EID: 33644828413     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2005.11.007     Document Type: Article
Times cited : (44)

References (42)
  • 1
    • 0032536141 scopus 로고    scopus 로고
    • Long terminal repeats of human endogenous retrovirus K family (HERV-K) specifically bind host cell nuclear proteins
    • S.B. Akopov, L.G. Nikolaev, P.P. Khil, Y.B. Lebedev, and E.D. Sverdlov Long terminal repeats of human endogenous retrovirus K family (HERV-K) specifically bind host cell nuclear proteins FEBS Lett. 421 3 1998 229 233
    • (1998) FEBS Lett. , vol.421 , Issue.3 , pp. 229-233
    • Akopov, S.B.1    Nikolaev, L.G.2    Khil, P.P.3    Lebedev, Y.B.4    Sverdlov, E.D.5
  • 5
    • 0030854754 scopus 로고    scopus 로고
    • Endogenous retroviruses and the evolution of resistance to retroviral infection
    • S. Best, P.R. Le Tissier, and J.P. Stoye Endogenous retroviruses and the evolution of resistance to retroviral infection Trends Microbiol. 5 8 1997 313 318
    • (1997) Trends Microbiol. , vol.5 , Issue.8 , pp. 313-318
    • Best, S.1    Le Tissier, P.R.2    Stoye, J.P.3
  • 6
    • 4344651631 scopus 로고    scopus 로고
    • Retroelements and formation of chimeric retrogenes
    • A.A. Buzdin Retroelements and formation of chimeric retrogenes Cell. Mol. Life Sci. 61 16 2004 2046 2059
    • (2004) Cell. Mol. Life Sci. , vol.61 , Issue.16 , pp. 2046-2059
    • Buzdin, A.A.1
  • 7
    • 0036195378 scopus 로고    scopus 로고
    • A technique for genome-wide identification of differences in the interspersed repeats integrations between closely related genomes and its application to detection of human-specific integrations of HERV-K LTRs
    • A. Buzdin, K. Khodosevich, I. Mamedov, T. Vinogradova, Y. Lebedev, G. Hunsmann, and E. Sverdlov A technique for genome-wide identification of differences in the interspersed repeats integrations between closely related genomes and its application to detection of human-specific integrations of HERV-K LTRs Genomics 79 3 2002 413 422
    • (2002) Genomics , vol.79 , Issue.3 , pp. 413-422
    • Buzdin, A.1    Khodosevich, K.2    Mamedov, I.3    Vinogradova, T.4    Lebedev, Y.5    Hunsmann, G.6    Sverdlov, E.7
  • 8
    • 0037294876 scopus 로고    scopus 로고
    • Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: Three master genes were active simultaneously during branching of hominoid lineages(small star, filled)
    • A. Buzdin, S. Ustyugova, K. Khodosevich, I. Mamedov, Y. Lebedev, G. Hunsmann, and E. Sverdlov Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: three master genes were active simultaneously during branching of hominoid lineages(small star, filled) Genomics 81 2 2003 149 156
    • (2003) Genomics , vol.81 , Issue.2 , pp. 149-156
    • Buzdin, A.1    Ustyugova, S.2    Khodosevich, K.3    Mamedov, I.4    Lebedev, Y.5    Hunsmann, G.6    Sverdlov, E.7
  • 9
    • 0038778270 scopus 로고    scopus 로고
    • Human genome-specific HERV-K intron LTR genes have a non-random orientation relative to the direction of transcription, and, possibly, participated in antisense gene expression regulation
    • A.A. Buzdin, Y.B. Lebedev, and E.D. Sverdlov Human genome-specific HERV-K intron LTR genes have a non-random orientation relative to the direction of transcription, and, possibly, participated in antisense gene expression regulation Bioorg. Khim. 29 1 2003 103 106
    • (2003) Bioorg. Khim. , vol.29 , Issue.1 , pp. 103-106
    • Buzdin, A.A.1    Lebedev, Y.B.2    Sverdlov, E.D.3
  • 10
    • 0032735122 scopus 로고    scopus 로고
    • Germ cell expression of an isolated human endogenous retroviral long terminal repeat of the HERV-K/HTDV family in transgenic mice
    • A.E. Casau, J.E. Vaughan, G. Lozano, and A.J. Levine Germ cell expression of an isolated human endogenous retroviral long terminal repeat of the HERV-K/HTDV family in transgenic mice J. Virol. 73 12 1999 9976 9983
    • (1999) J. Virol. , vol.73 , Issue.12 , pp. 9976-9983
    • Casau, A.E.1    Vaughan, J.E.2    Lozano, G.3    Levine, A.J.4
  • 12
    • 0023807622 scopus 로고
    • DNA sequences involved in transcriptional regulation of the mouse beta-globin promoter in murine erythroleukemia cells
    • A. Cowie, and R.M. Myers DNA sequences involved in transcriptional regulation of the mouse beta-globin promoter in murine erythroleukemia cells Mol. Cell. Biol. 8 8 1988 3122 3128
    • (1988) Mol. Cell. Biol. , vol.8 , Issue.8 , pp. 3122-3128
    • Cowie, A.1    Myers, R.M.2
  • 14
    • 0034724652 scopus 로고    scopus 로고
    • Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region
    • A.N. Domansky, E.P. Kopantzev, E.V. Snezhkov, Y.B. Lebedev, C. Leib-Mosch, and E.D. Sverdlov Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region FEBS Lett. 472 2-3 2000 191 195
    • (2000) FEBS Lett. , vol.472 , Issue.2-3 , pp. 191-195
    • Domansky, A.N.1    Kopantzev, E.P.2    Snezhkov, E.V.3    Lebedev, Y.B.4    Leib-Mosch, C.5    Sverdlov, E.D.6
  • 15
    • 1242319532 scopus 로고    scopus 로고
    • Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: Implications for human and viral evolution
    • J.F. Hughes, and J.M. Coffin Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution Proc. Natl. Acad. Sci. U.S.A. 101 6 2004 1668 1672
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , Issue.6 , pp. 1668-1672
    • Hughes, J.F.1    Coffin, J.M.2
  • 16
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International human genome sequencing consortium
    • International human genome sequencing consortium Initial sequencing and analysis of the human genome Nature 409 6822 2001 860 921
    • (2001) Nature , vol.409 , Issue.6822 , pp. 860-921
  • 17
    • 28744457506 scopus 로고    scopus 로고
    • The tissue-specific methylation of human-specific endogenous retroviral LTRs
    • K. Khodosevich, Y. Lebedev, and E. Sverdlov The tissue-specific methylation of human-specific endogenous retroviral LTRs Bioorg. Khim. 30 5 2004 493 498
    • (2004) Bioorg. Khim. , vol.30 , Issue.5 , pp. 493-498
    • Khodosevich, K.1    Lebedev, Y.2    Sverdlov, E.3
  • 18
    • 2342567764 scopus 로고    scopus 로고
    • Large-scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach
    • K. Khodosevich, Y. Lebedev, and E.D. Sverdlov Large-scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach Nucleic Acids Res. 32 3 2004 e31
    • (2004) Nucleic Acids Res. , vol.32 , Issue.3 , pp. 31
    • Khodosevich, K.1    Lebedev, Y.2    Sverdlov, E.D.3
  • 19
    • 0031975190 scopus 로고    scopus 로고
    • Host cis-mediated extinction of a retrovirus permissive for expression in embryonal stem cells during differentiation
    • C. Laker, J. Meyer, A. Schopen, J. Friel, C. Heberlein, W. Ostertag, and C. Stocking Host cis-mediated extinction of a retrovirus permissive for expression in embryonal stem cells during differentiation J. Virol. 72 1 1998 339 348
    • (1998) J. Virol. , vol.72 , Issue.1 , pp. 339-348
    • Laker, C.1    Meyer, J.2    Schopen, A.3    Friel, J.4    Heberlein, C.5    Ostertag, W.6    Stocking, C.7
  • 20
    • 11144248017 scopus 로고    scopus 로고
    • CpG methylation directly regulates transcriptional activity of the human endogenous retrovirus family HERV-K(HML-2)
    • L. Lavie, M. Kitova, E. Maldener, E. Meese, and J. Mayer CpG methylation directly regulates transcriptional activity of the human endogenous retrovirus family HERV-K(HML-2) J. Virol. 79 2 2005 876 883
    • (2005) J. Virol. , vol.79 , Issue.2 , pp. 876-883
    • Lavie, L.1    Kitova, M.2    Maldener, E.3    Meese, E.4    Mayer, J.5
  • 21
    • 0031922773 scopus 로고    scopus 로고
    • Subfamilies and nearest-neighbour dendrogram for the LTRs of human endogenous retroviruses HERV-K mapped on human chromosome 19: Physical neighbourhood does not correlate with identity level
    • I. Lavrentieva, P. Khil, T. Vinogradova, A. Akhmedov, A. Lapuk, O. Shakhova, Y. Lebedev, G. Monastyrskaya, and E.D. Sverdlov Subfamilies and nearest-neighbour dendrogram for the LTRs of human endogenous retroviruses HERV-K mapped on human chromosome 19: physical neighbourhood does not correlate with identity level Hum. Genet. 102 1998 107 116
    • (1998) Hum. Genet. , vol.102 , pp. 107-116
    • Lavrentieva, I.1    Khil, P.2    Vinogradova, T.3    Akhmedov, A.4    Lapuk, A.5    Shakhova, O.6    Lebedev, Y.7    Monastyrskaya, G.8    Sverdlov, E.D.9
  • 22
    • 0029938821 scopus 로고    scopus 로고
    • The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences
    • R. Lower, J. Lower, and R. Kurth The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences Proc. Natl. Acad. Sci. U.S.A. 93 11 1996 5177 5184
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , Issue.11 , pp. 5177-5184
    • Lower, R.1    Lower, J.2    Kurth, R.3
  • 23
    • 0028363718 scopus 로고
    • Ultrastructural characterization of endogenous retroviral particles isolated from normal human placentas
    • T.W. Lyden, P.M. Johnson, J.M. Mwenda, and N.S. Rote Ultrastructural characterization of endogenous retroviral particles isolated from normal human placentas Biol. Reprod. 51 1 1994 152 157
    • (1994) Biol. Reprod. , vol.51 , Issue.1 , pp. 152-157
    • Lyden, T.W.1    Johnson, P.M.2    Mwenda, J.M.3    Rote, N.S.4
  • 24
    • 12144282045 scopus 로고    scopus 로고
    • Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations
    • C. Macfarlane, and P. Simmonds Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations J. Mol. Evol. 59 5 2004 642 656
    • (2004) J. Mol. Evol. , vol.59 , Issue.5 , pp. 642-656
    • MacFarlane, C.1    Simmonds, P.2
  • 25
    • 4544345577 scopus 로고    scopus 로고
    • Detection of retroviral antisense transcripts and promoter activity of the HERV-K(C4) insertion in the MHC class III region
    • M. Mack, K. Bender, and P.M. Schneider Detection of retroviral antisense transcripts and promoter activity of the HERV-K(C4) insertion in the MHC class III region Immunogenetics 56 5 2004 321 332
    • (2004) Immunogenetics , vol.56 , Issue.5 , pp. 321-332
    • MacK, M.1    Bender, K.2    Schneider, P.M.3
  • 26
    • 0037099025 scopus 로고    scopus 로고
    • Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes
    • I. Mamedov, A. Batrak, A. Buzdin, E. Arzumanyan, Y. Lebedev, and E.D. Sverdlov Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes Nucleic Acids Res. 30 14 2002 e71
    • (2002) Nucleic Acids Res. , vol.30 , Issue.14 , pp. 71
    • Mamedov, I.1    Batrak, A.2    Buzdin, A.3    Arzumanyan, E.4    Lebedev, Y.5    Sverdlov, E.D.6
  • 27
    • 3843078649 scopus 로고    scopus 로고
    • A rare event of insertion polymorphism of a HERV-K LTR in the human genome
    • I. Mamedov, Y. Lebedev, G. Hunsmann, E. Khusnutdinova, and E. Sverdlov A rare event of insertion polymorphism of a HERV-K LTR in the human genome Genomics 84 3 2004 596 599
    • (2004) Genomics , vol.84 , Issue.3 , pp. 596-599
    • Mamedov, I.1    Lebedev, Y.2    Hunsmann, G.3    Khusnutdinova, E.4    Sverdlov, E.5
  • 28
    • 0027440474 scopus 로고
    • Characterization of novel reverse transcriptase encoding human endogenous retroviral sequences similar to type a and type B retroviruses: Differential transcription in normal human tissues
    • P. Medstrand, and J. Blomberg Characterization of novel reverse transcriptase encoding human endogenous retroviral sequences similar to type A and type B retroviruses: differential transcription in normal human tissues J. Virol. 67 11 1993 6778 6787
    • (1993) J. Virol. , vol.67 , Issue.11 , pp. 6778-6787
    • Medstrand, P.1    Blomberg, J.2
  • 29
    • 0031797726 scopus 로고    scopus 로고
    • Human-specific integrations of the HERV-K endogenous retrovirus family
    • P. Medstrand, and D.L. Mager Human-specific integrations of the HERV-K endogenous retrovirus family J. Virol. 72 12 1998 9782 9787
    • (1998) J. Virol. , vol.72 , Issue.12 , pp. 9782-9787
    • Medstrand, P.1    Mager, D.L.2
  • 30
    • 0036251775 scopus 로고    scopus 로고
    • Many human genes are transcribed from the antisense promoter of L1 retrotransposon
    • P. Nigumann, K. Redik, K. Matlik, and M. Speek Many human genes are transcribed from the antisense promoter of L1 retrotransposon Genomics 79 5 2002 628 634
    • (2002) Genomics , vol.79 , Issue.5 , pp. 628-634
    • Nigumann, P.1    Redik, K.2    Matlik, K.3    Speek, M.4
  • 32
    • 10644240714 scopus 로고    scopus 로고
    • Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray
    • W. Seifarth, O. Frank, U. Zeilfelder, B. Spiess, A.D. Greenwood, R. Hehlmann, and C. Leib-Mosch Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray J. Virol. 79 1 2005 341 352
    • (2005) J. Virol. , vol.79 , Issue.1 , pp. 341-352
    • Seifarth, W.1    Frank, O.2    Zeilfelder, U.3    Spiess, B.4    Greenwood, A.D.5    Hehlmann, R.6    Leib-Mosch, C.7
  • 33
    • 0004045702 scopus 로고    scopus 로고
    • 2nd ed. A.P. BIOS Scientific Publishers Ltd. Oxford, UK
    • T. Strachan, and A.P. Read 2nd ed. Hum. Mol. Genet. vol. 2 1999 BIOS Scientific Publishers Ltd. Oxford, UK
    • (1999) Hum. Mol. Genet. , vol.2
    • Strachan, T.1    Read2
  • 34
    • 0033217992 scopus 로고    scopus 로고
    • Retroviral regulators of gene expression in the human genome as possible factors for its evolution
    • E.D. Sverdlov Retroviral regulators of gene expression in the human genome as possible factors for its evolution Bioorg. Khim. 25 11 1999 821 827
    • (1999) Bioorg. Khim. , vol.25 , Issue.11 , pp. 821-827
    • Sverdlov, E.D.1
  • 35
    • 0033964662 scopus 로고    scopus 로고
    • Retroviruses and primate evolution
    • E.D. Sverdlov Retroviruses and primate evolution Bioessays 22 2 2000 161 171
    • (2000) Bioessays , vol.22 , Issue.2 , pp. 161-171
    • Sverdlov, E.D.1
  • 36
    • 0032509777 scopus 로고    scopus 로고
    • Molecular biology of cell nonpermissiveness to retroviruses. Has the time come?
    • J. Svoboda Molecular biology of cell nonpermissiveness to retroviruses. Has the time come? Gene 206 2 1998 153 163
    • (1998) Gene , vol.206 , Issue.2 , pp. 153-163
    • Svoboda, J.1
  • 37
    • 0034108733 scopus 로고    scopus 로고
    • Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database
    • M. Tristem Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database J. Virol. 74 8 2000 3715 3730
    • (2000) J. Virol. , vol.74 , Issue.8 , pp. 3715-3730
    • Tristem, M.1
  • 38
    • 0037044595 scopus 로고    scopus 로고
    • Purification of proteins specifically binding human endogenous retrovirus K long terminal repeat by affinity elution chromatography
    • D.O. Trubetskoy, L.L. Zavalova, S.B. Akopov, and L.G. Nikolaev Purification of proteins specifically binding human endogenous retrovirus K long terminal repeat by affinity elution chromatography J. Chromatogr., A 976 1-2 2002 95 101
    • (2002) J. Chromatogr., a , vol.976 , Issue.1-2 , pp. 95-101
    • Trubetskoy, D.O.1    Zavalova, L.L.2    Akopov, S.B.3    Nikolaev, L.G.4
  • 39
    • 0035841664 scopus 로고    scopus 로고
    • Solitary human endogenous retroviruses-K LTRs retain transcriptional activity in vivo, the mode of which is different in different cell types
    • T.V. Vinogradova, L.P. Leppik, L.G. Nikolaev, S.B. Akopov, A.M. Kleiman, N.B. Senyuta, and E.D. Sverdlov Solitary human endogenous retroviruses-K LTRs retain transcriptional activity in vivo, the mode of which is different in different cell types Virology 290 1 2001 83 90
    • (2001) Virology , vol.290 , Issue.1 , pp. 83-90
    • Vinogradova, T.V.1    Leppik, L.P.2    Nikolaev, L.G.3    Akopov, S.B.4    Kleiman, A.M.5    Senyuta, N.B.6    Sverdlov, E.D.7
  • 40
    • 0035678749 scopus 로고    scopus 로고
    • Selective Differential Display of RNAs containing interspersed repeats: Analysis of changes in the transcription of HERV-K LTRs in germ cell tumors
    • T. Vinogradova, L. Leppik, E. Kalinina, P. Zhulidov, K.H. Grzeschik, and E. Sverdlov Selective Differential Display of RNAs containing interspersed repeats: analysis of changes in the transcription of HERV-K LTRs in germ cell tumors Mol. Genet. Genomics 266 5 2002 796 805
    • (2002) Mol. Genet. Genomics , vol.266 , Issue.5 , pp. 796-805
    • Vinogradova, T.1    Leppik, L.2    Kalinina, E.3    Zhulidov, P.4    Grzeschik, K.H.5    Sverdlov, E.6
  • 41
    • 0030840954 scopus 로고    scopus 로고
    • Cytosine methylation and the ecology of intragenomic parasites
    • J.A. Yoder, C.P. Walsh, and T.H. Bestor Cytosine methylation and the ecology of intragenomic parasites Trends Genet. 13 8 1997 335 340
    • (1997) Trends Genet. , vol.13 , Issue.8 , pp. 335-340
    • Yoder, J.A.1    Walsh, C.P.2    Bestor, T.H.3
  • 42
    • 0025343891 scopus 로고
    • Identification of a novel factor that interacts with an immunoglobulin heavy-chain promoter and stimulates transcription in conjunction with the lymphoid cell-specific factor OTF2
    • B.K. Yoza, and R.G. Roeder Identification of a novel factor that interacts with an immunoglobulin heavy-chain promoter and stimulates transcription in conjunction with the lymphoid cell-specific factor OTF2 Mol. Cell. Biol. 10 5 1990 2145 2153
    • (1990) Mol. Cell. Biol. , vol.10 , Issue.5 , pp. 2145-2153
    • Yoza, B.K.1    Roeder, R.G.2


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