메뉴 건너뛰기




Volumn 86, Issue 1, 2012, Pages 262-276

Characterization of human endogenous retroviral elements in the blood of HIV-1-infected individuals

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; PROTEIN MLH2; UNCLASSIFIED DRUG; VIRUS RNA;

EID: 84855928953     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00602-11     Document Type: Article
Times cited : (79)

References (45)
  • 1
    • 85047690959 scopus 로고    scopus 로고
    • Antigenic drift as a mechanism for tumor evasion of destruction by cytolytic T lymphocytes
    • Bai XF., Liu J, Li O, Zheng P, Liu Y. 2003. Antigenic drift as a mechanism for tumor evasion of destruction by cytolytic T lymphocytes. J. Clin. Invest. 111:1487-1496.
    • (2003) J. Clin. Invest. , vol.111 , pp. 1487-1496
    • Bai, X.F.1    Liu, J.2    Li, O.3    Zheng, P.4    Liu, Y.5
  • 2
    • 5144227841 scopus 로고    scopus 로고
    • Retroelements and the human genome: new perspectives on an old relation
    • Bannert N, Kurth R. 2004. Retroelements and the human genome: new perspectives on an old relation. Proc. Natl. Acad. Sci. U. S. A. 101: 14572-14579.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 14572-14579
    • Bannert, N.1    Kurth, R.2
  • 3
    • 33645522272 scopus 로고    scopus 로고
    • Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans
    • Barbulescu M, et al. 1999. Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans. Curr. Biol. 9:861-868.
    • (1999) Curr. Biol. , vol.9 , pp. 861-868
    • Barbulescu, M.1
  • 4
    • 1842687449 scopus 로고    scopus 로고
    • Long-term reinfection of the human genome by endogenous retroviruses
    • Belshaw R, et al. 2004. Long-term reinfection of the human genome by endogenous retroviruses. Proc. Natl. Acad. Sci. U. S. A. 101:4894-4899.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 4894-4899
    • Belshaw, R.1
  • 5
    • 33746159892 scopus 로고    scopus 로고
    • A new real-time-RT-PCR for quantitation of human endogenous retroviruses type K (HERV-K) RNA load in plasma samples: increased HERV-K RNA titers in HIV-1 patients with HAART non-suppressive regimens
    • Contreras-Galindo R, et al. 2006. A new real-time-RT-PCR for quantitation of human endogenous retroviruses type K (HERV-K) RNA load in plasma samples: increased HERV-K RNA titers in HIV-1 patients with HAART non-suppressive regimens. J. Virol. Methods 136:51-57.
    • (2006) J. Virol. Methods , vol.136 , pp. 51-57
    • Contreras-Galindo, R.1
  • 7
    • 52649113832 scopus 로고    scopus 로고
    • Human endogenous retrovirus K (HML-2) elements in the plasma of people with lymphoma and breast cancer
    • Contreras-Galindo R, et al. 2008. Human endogenous retrovirus K (HML-2) elements in the plasma of people with lymphoma and breast cancer. J. Virol. 82:9329 -9336.
    • (2008) J. Virol. , vol.82 , pp. 9329-9336
    • Contreras-Galindo, R.1
  • 8
    • 0034874891 scopus 로고    scopus 로고
    • Evolutionary dynamics of the human endogenous retrovirus family HERV-K inferred from full-length proviral genomes
    • Costas J. 2001. Evolutionary dynamics of the human endogenous retrovirus family HERV-K inferred from full-length proviral genomes. J. Mol. Evol. 53:237-243.
    • (2001) J. Mol. Evol. , vol.53 , pp. 237-243
    • Costas, J.1
  • 9
    • 0021136489 scopus 로고
    • Transcriptional interference in avian retroviruses-implications for the promoter insertion model of leukaemogenesis
    • Cullen BR, Lomedico PT, Ju G. 1984. Transcriptional interference in avian retroviruses-implications for the promoter insertion model of leukaemogenesis. Nature 307:241-245.
    • (1984) Nature , vol.307 , pp. 241-245
    • Cullen, B.R.1    Lomedico, P.T.2    Ju, G.3
  • 10
    • 25444496459 scopus 로고    scopus 로고
    • Comprehensive search for intra-and interspecific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes
    • de Parseval N, et al. 2005. Comprehensive search for intra- and interspecific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes. BMC Genomics 6:117.
    • (2005) BMC Genomics , vol.6 , pp. 117
    • de Parseval, N.1
  • 11
    • 29744442929 scopus 로고    scopus 로고
    • Identification of a functional envelope protein from the HERV-K family of human endogenous retroviruses
    • Dewannieux M, Blaise S, Heidmann T. 2005. Identification of a functional envelope protein from the HERV-K family of human endogenous retroviruses. J. Virol. 79:15573-15577.
    • (2005) J. Virol. , vol.79 , pp. 15573-15577
    • Dewannieux, M.1    Blaise, S.2    Heidmann, T.3
  • 12
    • 33845296602 scopus 로고    scopus 로고
    • Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements
    • Dewannieux M, et al. 2006. Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res. 16:1548 -1556.
    • (2006) Genome Res , vol.16 , pp. 1548-1556
    • Dewannieux, M.1
  • 13
    • 13844275303 scopus 로고    scopus 로고
    • Recombination analysis tool (RAT): a program for the high-throughput detection of recombination
    • Etherington G, Dicks J, Roberts IN. 2005. Recombination analysis tool (RAT): a program for the high-throughput detection of recombination. Bioinformatics 21:278 -281.
    • (2005) Bioinformatics , vol.21 , pp. 278-281
    • Etherington, G.1    Dicks, J.2    Roberts, I.N.3
  • 14
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 34447301254 scopus 로고    scopus 로고
    • Expression pattern analysis of transcribed HERV sequences is complicated by ex vivo recombination
    • Flockerzi A, et al. 2007. Expression pattern analysis of transcribed HERV sequences is complicated by ex vivo recombination. Retrovirology 4:39.
    • (2007) Retrovirology , vol.4 , pp. 39
    • Flockerzi, A.1
  • 16
    • 0036891865 scopus 로고    scopus 로고
    • The complementary strand of the human T-cell leukemia virus type 1 RNA genome encodes a bZIP transcription factor that down-regulates viral transcription
    • Gaudray G, et al. 2002. The complementary strand of the human T-cell leukemia virus type 1 RNA genome encodes a bZIP transcription factor that down-regulates viral transcription. J. Virol. 76:12813-12822.
    • (2002) J. Virol. , vol.76 , pp. 12813-12822
    • Gaudray, G.1
  • 17
    • 72849127084 scopus 로고    scopus 로고
    • Reconstitution of the ancestral glycoprotein of human endogenous retrovirus K and modulation of its functional activity by truncation of the cytoplasmic domain
    • Hanke K, et al. 2009. Reconstitution of the ancestral glycoprotein of human endogenous retrovirus K and modulation of its functional activity by truncation of the cytoplasmic domain. J. Virol. 83:12790 -12800.
    • (2009) J. Virol. , vol.83 , pp. 12790-12800
    • Hanke, K.1
  • 18
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hills D, Bull J. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hills, D.1    Bull, J.2
  • 19
    • 0035734951 scopus 로고    scopus 로고
    • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution
    • Hughes JF, Coffin JM. 2001. Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution. Nat. Genet. 29:487- 489.
    • (2001) Nat. Genet. , vol.29 , pp. 487-489
    • Hughes, J.F.1    Coffin, J.M.2
  • 20
    • 1242319532 scopus 로고    scopus 로고
    • Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution
    • Hughes JF, Coffin JM. 2004. Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution. Proc. Natl. Acad. Sci. U. S. A. 101:1668-1672.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 1668-1672
    • Hughes, J.F.1    Coffin, J.M.2
  • 21
    • 0028231087 scopus 로고
    • Hepatitis C virus particle detected by immunoelectron microscopic study
    • Kaito M, et al. 1994. Hepatitis C virus particle detected by immunoelectron microscopic study. J. Gen. Virol. 75:1755-1760.
    • (1994) J. Gen. Virol. , vol.75 , pp. 1755-1760
    • Kaito, M.1
  • 22
    • 0034963371 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of intrapatient evolution of human immunodeficiency virus type 1 predominance of drift and purifying selection
    • Kils-Hütten L, Cheynier R, Wain-Hobson S, Meyerhans A. 2001. Phylogenetic reconstruction of intrapatient evolution of human immunodeficiency virus type 1: predominance of drift and purifying selection. J. Gen. Virol. 82:1621-1627.
    • (2001) J. Gen. Virol. , vol.82 , pp. 1621-1627
    • Kils-Hütten, L.1    Cheynier, R.2    Wain-Hobson, S.3    Meyerhans, A.4
  • 23
    • 33846542981 scopus 로고    scopus 로고
    • Reconstruction of an infectious human endogenous retrovirus
    • Lee Y, Bieniasz P. 2007. Reconstruction of an infectious human endogenous retrovirus. PLoS Pathog. 3(1):e10.
    • (2007) PLoS Pathog , vol.3 , Issue.1
    • Lee, Y.1    Bieniasz, P.2
  • 24
    • 80052041081 scopus 로고    scopus 로고
    • Analysis of HIV-1 expression level and sense of transcription by high-throughput sequencing of the infected cell
    • Lefebvre G, et al. 2011. Analysis of HIV-1 expression level and sense of transcription by high-throughput sequencing of the infected cell. J. Virol. 85:6205- 6211.
    • (2011) J. Virol. , vol.85 , pp. 6205-6211
    • Lefebvre, G.1
  • 25
    • 12144282045 scopus 로고    scopus 로고
    • Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations
    • Macfarlane C, Simmonds P. 2004. Allelic variation of HERV-K(HML-2) endogenous retroviral elements in human populations. J. Mol. Evol. 59: 642-656.
    • (2004) J. Mol. Evol. , vol.59 , pp. 642-656
    • Macfarlane, C.1    Simmonds, P.2
  • 26
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: recombination detection and analysis from sequence alignments
    • Martin DP, Williamson C, Posada D. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 27
    • 0027440474 scopus 로고
    • Characterization of novel reverse transcriptase encoding human endogenous retroviral sequences similar to type A and type B retroviruses: differential transcription in normal human tissues
    • Medstrand P, Blomberg J. 1993. Characterization of novel reverse transcriptase encoding human endogenous retroviral sequences similar to type A and type B retroviruses: differential transcription in normal human tissues. J. Virol. 67:6778-6787.
    • (1993) J. Virol. , vol.67 , pp. 6778-6787
    • Medstrand, P.1    Blomberg, J.2
  • 28
    • 0032510739 scopus 로고    scopus 로고
    • The amino acid following an Asn-X-Ser/Thr sequon is an important determinant of N-linked core glycosylation efficiency
    • Mellquist JL, Kasturi L, Spitalnik SL, Shakin-Eshleman SH. 1998. The amino acid following an Asn-X-Ser/Thr sequon is an important determinant of N-linked core glycosylation efficiency. Biochemistry 37: 6833-6837.
    • (1998) Biochemistry , vol.37 , pp. 6833-6837
    • Mellquist, J.L.1    Kasturi, L.2    Spitalnik, S.L.3    Shakin-Eshleman, S.H.4
  • 29
    • 0023731143 scopus 로고
    • A novel centromeric repetitive DNA from human chromosome 22
    • Metzdorf R, Göttert E, Blin N. 1988. A novel centromeric repetitive DNA from human chromosome 22. Chromosoma 97:154 -158.
    • (1988) Chromosoma , vol.97 , pp. 154-158
    • Metzdorf, R.1    Göttert, E.2    Blin, N.3
  • 30
    • 33646016613 scopus 로고    scopus 로고
    • Evaluation of two TaqMan PCR assays for the detection of HIV-1 proviral DNA in blood samples
    • Moroney SM, Loree C, Widen R. 2006. Evaluation of two TaqMan PCR assays for the detection of HIV-1 proviral DNA in blood samples. J. Microbiol. Methods 65:350 -353.
    • (2006) J. Microbiol. Methods , vol.65 , pp. 350-353
    • Moroney, S.M.1    Loree, C.2    Widen, R.3
  • 31
    • 0037317086 scopus 로고    scopus 로고
    • Demystified. Human endogenous retroviruses
    • Nelson PN, et al. 2003. Demystified. Human endogenous retroviruses. Mol. Pathol. 56:11-18.
    • (2003) Mol. Pathol , vol.56 , pp. 11-18
    • Nelson, P.N.1
  • 32
    • 0033129908 scopus 로고    scopus 로고
    • Changes in ds/dn in the HIV-1 env gene
    • Nielsen R. 1999. Changes in ds/dn in the HIV-1 env gene. Mol. Biol. Evol. 16:711-714.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 711-714
    • Nielsen, R.1
  • 33
    • 70349303282 scopus 로고    scopus 로고
    • The remarkable frequency of human immunodeficiency virus type 1 genetic recombination
    • Onafuwa-Nuga A, Telesnitsky A. 2009. The remarkable frequency of human immunodeficiency virus type 1 genetic recombination. Microbiol. Mol. Biol. Rev. 73:451- 480.
    • (2009) Microbiol. Mol. Biol. Rev. , vol.73 , pp. 451-480
    • Onafuwa-Nuga, A.1    Telesnitsky, A.2
  • 34
    • 0023010394 scopus 로고
    • Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome
    • Ono M, Yasunaga T, Miyata T, Ushikubo H. 1986. Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome. J. Virol. 60:589-598.
    • (1986) J. Virol. , vol.60 , pp. 589-598
    • Ono, M.1    Yasunaga, T.2    Miyata, T.3    Ushikubo, H.4
  • 35
    • 18544401333 scopus 로고    scopus 로고
    • HERVd: the Human Endogenous RetroViruses Database: update
    • Database issue
    • Paces J, et al. 2004. HERVd: the Human Endogenous RetroViruses Database: update. Nucleic Acids Res. 32(Database issue):D50.
    • (2004) Nucleic Acids Res , vol.32
    • Paces, J.1
  • 36
    • 19944428265 scopus 로고    scopus 로고
    • Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
    • Palmer S, et al. 2005. Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis. J. Clin. Microbiol. 43:406-413.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 406-413
    • Palmer, S.1
  • 37
    • 77950481763 scopus 로고    scopus 로고
    • Antisense transcription in gammaretroviruses as a mechanism of insertional activation of host genes
    • Rasmussen MH, et al. 2010. Antisense transcription in gammaretroviruses as a mechanism of insertional activation of host genes. J. Virol. 84:3780 -3788.
    • (2010) J. Virol. , vol.84 , pp. 3780-3788
    • Rasmussen, M.H.1
  • 38
    • 33750352990 scopus 로고    scopus 로고
    • Tempo and mode of ERV-K evolution in human and chimpanzee genomes
    • Romano CM, Ramalho RF, Zanotto PM. 2006. Tempo and mode of ERV-K evolution in human and chimpanzee genomes. Arch. Virol. 151: 2215-2228.
    • (2006) Arch. Virol. , vol.151 , pp. 2215-2228
    • Romano, C.M.1    Ramalho, R.F.2    Zanotto, P.M.3
  • 39
    • 0031694873 scopus 로고    scopus 로고
    • Proviral structure, chromosomal location, and expression of HERV-K-T47D, a novel human endogenous retrovirus derived from T47D particles
    • Seifarth W, et al. 1998. Proviral structure, chromosomal location, and expression of HERV-K-T47D, a novel human endogenous retrovirus derived from T47D particles. J. Virol. 72:8384-8391.
    • (1998) J. Virol. , vol.72 , pp. 8384-8391
    • Seifarth, W.1
  • 40
    • 0035280901 scopus 로고    scopus 로고
    • Transcriptionally active HERV-K genes: identification, isolation, and chromosomal mapping
    • Sugimoto J, et al. 2001. Transcriptionally active HERV-K genes: identification, isolation, and chromosomal mapping. Genomics 72:137-144.
    • (2001) Genomics , vol.72 , pp. 137-144
    • Sugimoto, J.1
  • 41
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34:W609-W612.
    • (2006) Nucleic Acids Res , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 42
    • 0242374713 scopus 로고    scopus 로고
    • Genome-wide screening, cloning, chromosomal assignment, and expression of full-length human endogenous retrovirus type K
    • Tönjes RR, Czauderna F, Kurth R. 1999. Genome-wide screening, cloning, chromosomal assignment, and expression of full-length human endogenous retrovirus type K. J. Virol. 73:9187-9195.
    • (1999) J. Virol. , vol.73 , pp. 9187-9195
    • Tönjes, R.R.1    Czauderna, F.2    Kurth, R.3
  • 43
    • 0035797901 scopus 로고    scopus 로고
    • Insertional polymorphisms of full-length endogenous retroviruses in humans
    • Turner G, et al. 2001. Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr. Biol. 11:1531-1535.
    • (2001) Curr. Biol. , vol.11 , pp. 1531-1535
    • Turner, G.1
  • 44
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 45
    • 9744280420 scopus 로고    scopus 로고
    • Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin
    • (2004) Glycobiology , vol.14 , pp. 1229-1246
    • Zhang, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.