-
1
-
-
77955120400
-
Chagas disease: Changes in knowledge and management
-
F.X. Lescure, G. Le Loup, H. Freilij, M. Develoux, L. Paris, L. Brutus, and G. Pialoux Chagas disease: changes in knowledge and management Lancet Infect. Dis. 10 2010 556 570
-
(2010)
Lancet Infect. Dis.
, vol.10
, pp. 556-570
-
-
Lescure, F.X.1
Le Loup, G.2
Freilij, H.3
Develoux, M.4
Paris, L.5
Brutus, L.6
Pialoux, G.7
-
2
-
-
84925666123
-
-
http://www.treatchagas.org/
-
-
-
-
3
-
-
84875614866
-
Global enconomic burden of Chagas disease: A computational simulation model
-
B.Y. Lee, K.M. Bacon, M.E. Botazzi, and P.J. Hotez Global enconomic burden of Chagas disease: a computational simulation model Lancet Infect. Dis. 13 2013 342 348
-
(2013)
Lancet Infect. Dis.
, vol.13
, pp. 342-348
-
-
Lee, B.Y.1
Bacon, K.M.2
Botazzi, M.E.3
Hotez, P.J.4
-
5
-
-
79961011048
-
Vaccine development against Trypanosoma cruzi and Chagas disease
-
J.C. Vázquez-Chagoyán, S. Grupta, and N.J. Garg Vaccine development against Trypanosoma cruzi and Chagas disease Adv. Parasitol. 75 2011 121 146
-
(2011)
Adv. Parasitol.
, vol.75
, pp. 121-146
-
-
Vázquez-Chagoyán, J.C.1
Grupta, S.2
Garg, N.J.3
-
6
-
-
33750531864
-
Innovative lead discovery strategies for tropical diseases
-
S. Nwaka, and A. Hudson Innovative lead discovery strategies for tropical diseases Nat. Rev. Drug Discov. 5 2006 941 955
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 941-955
-
-
Nwaka, S.1
Hudson, A.2
-
7
-
-
79955116867
-
Novel compounds to combat trypanosomatid infections: A medicinal chemical perspective
-
M. González, and H. Cerecetto Novel compounds to combat trypanosomatid infections: a medicinal chemical perspective Expert Opin. Ther. Pat. 21 2011 699 715
-
(2011)
Expert Opin. Ther. Pat.
, vol.21
, pp. 699-715
-
-
González, M.1
Cerecetto, H.2
-
8
-
-
80455174227
-
Screening of potential anti-Trypanosoma cruzi candidates: In vitro and in vivo studies
-
M. de Nazaré, C. Soeiro, and S. Lisboa de Castro Screening of potential anti-Trypanosoma cruzi candidates: in vitro and in vivo studies Open Med. Chem. J. 5 2011 21 30
-
(2011)
Open Med. Chem. J.
, vol.5
, pp. 21-30
-
-
De Nazaré, M.1
Soeiro, C.2
Lisboa De Castro, S.3
-
9
-
-
0035062226
-
Glycolisis as a target for the design of new anti-trypanosome drugs
-
C.L. Verlinde, V. Hannaert, C. Blonski, M. Willson, J.J. Périé, L.A. Fothergill-Gilmore, F.R. Opperdoes, M.H. Gelb, W.G. Hol, and P.A. Michels Glycolisis as a target for the design of new anti-trypanosome drugs Drug Resist. Update 4 2001 50 65
-
(2001)
Drug Resist. Update
, vol.4
, pp. 50-65
-
-
Verlinde, C.L.1
Hannaert, V.2
Blonski, C.3
Willson, M.4
Périé, J.J.5
Fothergill-Gilmore, L.A.6
Opperdoes, F.R.7
Gelb, M.H.8
Hol, W.G.9
Michels, P.A.10
-
10
-
-
38049125879
-
Species-specific inhibition of Giardia lamblia triosephosphate isomerase by localized perturbation of the homodimer
-
S. Enriquez-Flores, A. Rodríguez-Romero, G. Hernández-Alcantara, I. De la Mora-De la Mora, P. Gutiérrez-Castellón, K. Carvajal, G. López-Velázquez, and H. Reyes-Vivas Species-specific inhibition of Giardia lamblia triosephosphate isomerase by localized perturbation of the homodimer Mol. Biochem. Parasitol. 157 2008 179 186
-
(2008)
Mol. Biochem. Parasitol.
, vol.157
, pp. 179-186
-
-
Enriquez-Flores, S.1
Rodríguez-Romero, A.2
Hernández-Alcantara, G.3
De La Mora-De La Mora, I.4
Gutiérrez-Castellón, P.5
Carvajal, K.6
López-Velázquez, G.7
Reyes-Vivas, H.8
-
11
-
-
0036389732
-
Structure and inactivation of triosephosphate isomerase from Entamoeba histolytica
-
A. Rodríguez-Romero, A. Herrnández-Santoyo, L. del Pozo Yauner, A. Kornhauser, and D.A. Fernández-Velasco Structure and inactivation of triosephosphate isomerase from Entamoeba histolytica J. Mol. Biol. 322 2002 669 675
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 669-675
-
-
Rodríguez-Romero, A.1
Herrnández-Santoyo, A.2
Del Pozo Yauner, L.3
Kornhauser, A.4
Fernández-Velasco, D.A.5
-
12
-
-
0032538281
-
Differences in intersubunit contacts in thriosephosphate isomerase from two closely related pathogenic parasites
-
E. Maldonado, M. Soriano-García, A. Moreno, N. Cabrera, and G. Garza-Ramos Differences in intersubunit contacts in thriosephosphate isomerase from two closely related pathogenic parasites J. Mol. Biol. 283 1998 193 203
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 193-203
-
-
Maldonado, E.1
Soriano-García, M.2
Moreno, A.3
Cabrera, N.4
Garza-Ramos, G.5
-
13
-
-
0031570683
-
Triosephosphate isomerase from Plasmodium falciparum: The crystal structure provides insights into antimalarial drug design
-
S.S. Velanker, S.S. Ray, R.S. Gokhale, S. Suma, H. Balaram, P. Balaram, and M.R.N. Murthy Triosephosphate isomerase from Plasmodium falciparum: the crystal structure provides insights into antimalarial drug design Structure 5 1997 751 761
-
(1997)
Structure
, vol.5
, pp. 751-761
-
-
Velanker, S.S.1
Ray, S.S.2
Gokhale, R.S.3
Suma, S.4
Balaram, H.5
Balaram, P.6
Murthy, M.R.N.7
-
14
-
-
0025763437
-
Enzyme-catalysis: Not different, just better
-
J.R. Knowles Enzyme-catalysis: not different, just better Nature 350 1991 121 124
-
(1991)
Nature
, vol.350
, pp. 121-124
-
-
Knowles, J.R.1
-
15
-
-
78649328166
-
Massive screening yields novel and selective Trypanosoma cruzi triosephosphate isomerase dimer-interface-irreversible inhibitors with anti-trypanosomal activity
-
G. Álvarez, B. Aguirre-López, J. Varela, M. Cabrera, A. Merlino, G.V. López, M.L. Lavaggi, W. Porcal, R. Di Maio, M. González, H. Cerecetto, N. Cabrera, R. Pérez-Montfort, M. Tuena de Gómez-Puyou, and A. Gómez-Puyou Massive screening yields novel and selective Trypanosoma cruzi triosephosphate isomerase dimer-interface-irreversible inhibitors with anti-trypanosomal activity Eur. J. Med. Chem. 45 2010 5767 5772
-
(2010)
Eur. J. Med. Chem.
, vol.45
, pp. 5767-5772
-
-
Álvarez, G.1
Aguirre-López, B.2
Varela, J.3
Cabrera, M.4
Merlino, A.5
López, G.V.6
Lavaggi, M.L.7
Porcal, W.8
Di Maio, R.9
González, M.10
Cerecetto, H.11
Cabrera, N.12
Pérez-Montfort, R.13
Tuena De Gómez-Puyou, M.14
Gómez-Puyou, A.15
-
16
-
-
47749092414
-
Perturbation of the dimer interface of triosephosphate isomerase and its effect on Trypanosoma cruzi
-
V. Olivares-Illana, A. Rodríguez-Romero, I. Becker, M. Berzunza, J. García, R. Pérez-Montfort, N. Cabrera, F. López-Calahorra, M. Tuena de Gómez-Puyou, and A. Gómez-Puyou. Perturbation of the dimer interface of triosephosphate isomerase and its effect on Trypanosoma cruzi PLoS Negl. Trop. Dis. 1 2007 e01
-
(2007)
PLoS Negl. Trop. Dis.
, vol.1
, pp. e01
-
-
Olivares-Illana, V.1
Rodriguez-Romero, A.2
Becker, I.3
Berzunza, M.4
Garcia, J.5
Perez-Montfort, R.6
Cabrera, N.7
Lopez-Calahorra, F.8
Tuena De Gomez-Puyou, M.9
Gomez-Puyou, A.10
-
17
-
-
33644535470
-
Structural differences in triosephosphate isomerase from different species and discovery of a multitrypanosomatid inhibitor
-
V. Olivares-Illana, R. Pérez-Montfort, F. López-Calahorra, M. Costas, A. Rodríguez-Romero, M. Tuena de Gómez-Puyou, and A. Gómez-Puyou Structural differences in triosephosphate isomerase from different species and discovery of a multitrypanosomatid inhibitor Biochemistry 45 2006 2556 2560
-
(2006)
Biochemistry
, vol.45
, pp. 2556-2560
-
-
Olivares-Illana, V.1
Pérez-Montfort, R.2
López-Calahorra, F.3
Costas, M.4
Rodríguez-Romero, A.5
Tuena De Gómez-Puyou, M.6
Gómez-Puyou, A.7
-
18
-
-
0036377325
-
Highly specific inactivation of triosephosphate isomerase from Trypanosoma cruzi
-
A. Tellez-Valencia, S. Ávila-Ríos, R. Pérez-Montfort, A. Rodríguez-Romero, M. Tuena de Gómez-Puyou, F. López-Calahorra, and A. Gómez-Puyou Highly specific inactivation of triosephosphate isomerase from Trypanosoma cruzi Biochem. Biophys. Res. Commun. 295 2002 958 963
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.295
, pp. 958-963
-
-
Tellez-Valencia, A.1
Ávila-Ríos, S.2
Pérez-Montfort, R.3
Rodríguez-Romero, A.4
Tuena De Gómez-Puyou, M.5
López-Calahorra, F.6
Gómez-Puyou, A.7
-
19
-
-
84896349759
-
New chemotypes as Trypanosoma cruzi triosephosphate isomerase inhibitors. A deeper insight into the mechanism of inhibition
-
G. Álvarez, J. Martínez, B. Aguirre-López, N. Cabrera, L. Pérez-Díaz, M. Tuena de Gómez- Puyou, A. Gómez-Puyou, R. Pérez-Montfort, B. Garat, A. Merlino, M. González, and H. Cerecetto New chemotypes as Trypanosoma cruzi triosephosphate isomerase inhibitors. A deeper insight into the mechanism of inhibition J. Enzym. Inhib. Med. Chem. 29 2014 198 204
-
(2014)
J. Enzym. Inhib. Med. Chem.
, vol.29
, pp. 198-204
-
-
Álvarez, G.1
Martínez, J.2
Aguirre-López, B.3
Cabrera, N.4
Pérez-Díaz, L.5
Tuena De Gómez- Puyou, M.6
Gómez-Puyou, A.7
Pérez-Montfort, R.8
Garat, B.9
Merlino, A.10
González, M.11
Cerecetto, H.12
-
20
-
-
84855300442
-
The design and inhibitory profile of new benzimidazole derivatives against triosephosphate isomerase from Trypanosoma cruzi: A problem of residue motility
-
A. Romo-Mancillas, A. Tellez-Valencia, L. Yepez-Mulia, F. Hernández-Luis, A. Hernández-Campos, and R. Castillo The design and inhibitory profile of new benzimidazole derivatives against triosephosphate isomerase from Trypanosoma cruzi: a problem of residue motility J. Mol. Graph. Model. 30 2011 90 99
-
(2011)
J. Mol. Graph. Model.
, vol.30
, pp. 90-99
-
-
Romo-Mancillas, A.1
Tellez-Valencia, A.2
Yepez-Mulia, L.3
Hernández-Luis, F.4
Hernández-Campos, A.5
Castillo, R.6
-
21
-
-
77149137688
-
Theoretical analysis of intermolecular interactions of selected residues of triosephosphate isomerase from Trypanosoma cruzi with its inhibitor 3-(2-benzothiazolylthio)-1-propanesulfonic acid
-
R. Chavez-Calvillo, M. Costas, and J. Hernández-Trujillo Theoretical analysis of intermolecular interactions of selected residues of triosephosphate isomerase from Trypanosoma cruzi with its inhibitor 3-(2-benzothiazolylthio)-1-propanesulfonic acid Phys. Chem. Chem. Phys. 12 2010 2067 2074
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 2067-2074
-
-
Chavez-Calvillo, R.1
Costas, M.2
Hernández-Trujillo, J.3
-
22
-
-
33750684639
-
Toward a rational design of selective multitrypanosomatid inhibitors: A computational docking study
-
L.M. Espinoza-Fonseca, and J.G. Trujillo-Ferrara Toward a rational design of selective multitrypanosomatid inhibitors: a computational docking study Bioorg. Med. Chem. Lett. 16 2006 6288 6292
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 6288-6292
-
-
Espinoza-Fonseca, L.M.1
Trujillo-Ferrara, J.G.2
-
23
-
-
13744258061
-
Structural considerations for the rational design of selective anti-trypanosomal agents: The role of the aromatic clusters at the interface of triosephosphate isomerase dimer
-
L.M. Espinoza-Fonseca, and J.G. Trujillo-Ferrara Structural considerations for the rational design of selective anti-trypanosomal agents: the role of the aromatic clusters at the interface of triosephosphate isomerase dimer Biochem. Biophys. Res. Commun. 328 2005 922 928
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.328
, pp. 922-928
-
-
Espinoza-Fonseca, L.M.1
Trujillo-Ferrara, J.G.2
-
24
-
-
2442545256
-
Exploring the possible binding sites at the interface of triosephosphate isomerase dimer as a potential target for anti-trypanosomal drug design
-
L.M. Espinoza-Fonseca, and J.G. Trujillo-Ferrara Exploring the possible binding sites at the interface of triosephosphate isomerase dimer as a potential target for anti-trypanosomal drug design Bioorg. Med. Chem. Lett. 14 2004 3151 3154
-
(2004)
Bioorg. Med. Chem. Lett.
, vol.14
, pp. 3151-3154
-
-
Espinoza-Fonseca, L.M.1
Trujillo-Ferrara, J.G.2
-
25
-
-
77957899529
-
Advances and challenges in protein-ligand docking
-
S-Y. Huang, and X. Zou Advances and challenges in protein-ligand docking Int. J. Mol. Sci. 11 2010 3016 3034
-
(2010)
Int. J. Mol. Sci.
, vol.11
, pp. 3016-3034
-
-
Huang, S.-Y.1
Zou, X.2
-
26
-
-
33947317704
-
Dynamic requirements for a functional protein hinge
-
J.G. Kempf, J-Y. Jung, C. Ragain, N.S. Sampson, and J.P. Loria Dynamic requirements for a functional protein hinge J. Mol. Biol. 368 2007 131 149
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 131-149
-
-
Kempf, J.G.1
Jung, J.-Y.2
Ragain, C.3
Sampson, N.S.4
Loria, J.P.5
-
27
-
-
33747200808
-
Combining docking and molecular dynamics simulations in drug design
-
H. Alonso, A.A. Bliznyuk, and J.E. Gready Combining docking and molecular dynamics simulations in drug design Med. Chem. Rev. 26 2006 531 568
-
(2006)
Med. Chem. Rev.
, vol.26
, pp. 531-568
-
-
Alonso, H.1
Bliznyuk, A.A.2
Gready, J.E.3
-
28
-
-
79960218748
-
Efficient incorporation of protein flexibility and dynamics into molecular docking simulations
-
M.A. Lill Efficient incorporation of protein flexibility and dynamics into molecular docking simulations Biochemistry 50 2011 6157 6169
-
(2011)
Biochemistry
, vol.50
, pp. 6157-6169
-
-
Lill, M.A.1
-
29
-
-
50549098440
-
Docking and molecular dynamics study on the inhibitory activity of coumarins on aldose reductase
-
Z. Wang, B. Ling, R. Zhang, and Y. Liu Docking and molecular dynamics study on the inhibitory activity of coumarins on aldose reductase J. Phys. Chem. B 32 2008 10033 10040
-
(2008)
J. Phys. Chem. B
, vol.32
, pp. 10033-10040
-
-
Wang, Z.1
Ling, B.2
Zhang, R.3
Liu, Y.4
-
30
-
-
84874589088
-
1,2,4-thiadiazol-5(4H)-ones: A new class of selective inhibitors of Trypanosoma cruzi triosephosphate isomerase. Study of the mechanism of inhibition
-
G. Álvarez, B. Aguirre-López, N. Cabrera, E.B. Marins, L. Tinoco, C.I. Batthyany, M. Tuena de Gómez- Puyou, A. Gómez-Puyou, R. Pérez-Montfort, H. Cerecetto, and M. González 1,2,4-thiadiazol-5(4H)-ones: a new class of selective inhibitors of Trypanosoma cruzi triosephosphate isomerase. Study of the mechanism of inhibition J. Enzym. Inhib. Med. Chem. 28 2013 981 989
-
(2013)
J. Enzym. Inhib. Med. Chem.
, vol.28
, pp. 981-989
-
-
Álvarez, G.1
Aguirre-López, B.2
Cabrera, N.3
Marins, E.B.4
Tinoco, L.5
Batthyany, C.I.6
Tuena De Gómez- Puyou, M.7
Gómez-Puyou, A.8
Pérez-Montfort, R.9
Cerecetto, H.10
González, M.11
-
31
-
-
84862614975
-
-
University of California San Francisco
-
D.A. Case, T.A. Darden, T.E. Cheatham III, C.L. Simmerling, J. Wang, R.E. Duke, R. Luo, R.C. Walker, W. Zhang, K.M. Merz, B. Roberts, S. Hayik, A. Roitberg, G. Seabra, J. Swails, A.W. Goetz, I. Kolossvai, K.F. Wong, F. Paesani, J. Vanicek, R.M. Wolf, J. Liu, X. Wu, S.R. Brozell, T. Steinbrecher, H. Gohlke, Q. Cai, X. Ye, J. Wang, M.-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman AMBER 12 2012 University of California San Francisco
-
(2012)
AMBER 12
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
Roberts, B.11
Hayik, S.12
Roitberg, A.13
Seabra, G.14
Swails, J.15
Goetz, A.W.16
Kolossvai, I.17
Wong, K.F.18
Paesani, F.19
Vanicek, J.20
Wolf, R.M.21
Liu, J.22
Wu, X.23
Brozell, S.R.24
Steinbrecher, T.25
Gohlke, H.26
Cai, Q.27
Ye, X.28
Wang, J.29
Hsieh, M.-J.30
Cui, G.31
Roe, D.R.32
Mathews, D.H.33
Seetin, M.G.34
Salomon-Ferrer, R.35
Sagui, C.36
Babin, V.37
Luchko, T.38
Gusarov, S.39
Kovalenko, A.40
Kollman, P.A.41
more..
-
32
-
-
0242663237
-
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations
-
Y. Duan, C. Wu, S. Chowdhury, M.C. Lee, G. Xiong, W. Zhang, R. Yang, P. Cieplak, R. Luo, T. Lee, J. Caldwell, J. Wang, and P. Kollman A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations J. Comput. Chem. 24 2003 1999 2012
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
Wu, C.2
Chowdhury, S.3
Lee, M.C.4
Xiong, G.5
Zhang, W.6
Yang, R.7
Cieplak, P.8
Luo, R.9
Lee, T.10
Caldwell, J.11
Wang, J.12
Kollman, P.13
-
33
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey, and M.L. Klein Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79 1983 926 935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
34
-
-
33645961739
-
A smooth particle mesh Ewald method
-
U. Essmann, L. Perera, M.L. Berkowitz, T. Darden, H. Lee, and L.G. Pedersen A smooth particle mesh Ewald method J. Chem. Phys. 103 1995 8577 8593
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
35
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
H.J.C. Berendsen, J.P.M. Postma, W.F. van Gunsteren, A. DiNola, and J.R. Haak Molecular dynamics with coupling to an external bath J. Chem. Phys. 81 1984 3584 3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3584-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
36
-
-
84952104504
-
An analysis of the accuracy of Langevin and molecular dynamics algorithms
-
R.W. Pastor, B.R. Brooks, and A. Szabo An analysis of the accuracy of Langevin and molecular dynamics algorithms Mol. Phys. 65 1988 1409 1419
-
(1988)
Mol. Phys.
, vol.65
, pp. 1409-1419
-
-
Pastor, R.W.1
Brooks, B.R.2
Szabo, A.3
-
37
-
-
33646940952
-
Numerical-integration of cartesian equations of motion of a system with constraints-molecular-dynamics of N-alkanes
-
J.P. Ryckaert, G. Ciccotti, and H.J.C. Berendsen Numerical-integration of cartesian equations of motion of a system with constraints-molecular-dynamics of N-alkanes J. Comput. Phys. 23 1977 327 341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
38
-
-
0000189651
-
Density-functional thermochemistry. III. The role of exact exchange
-
A.D. Becke Density-functional thermochemistry. III. The role of exact exchange J. Chem. Phys. 98 1993 5648 5652
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
39
-
-
0000141448
-
Self-consistent molecular orbital methods. 9. Extended Gaussian-type basis for molecular-orbital studies of organic molecules
-
R. Ditchfield, W.J. Hehre, and J.A. Pople Self-consistent molecular orbital methods. 9. Extended Gaussian-type basis for molecular-orbital studies of organic molecules J. Chem. Phys. 54 1971 724 728
-
(1971)
J. Chem. Phys.
, vol.54
, pp. 724-728
-
-
Ditchfield, R.1
Hehre, W.J.2
Pople, J.A.3
-
40
-
-
0031209054
-
A new integral equation formalism for the polarizable continuum model: Theoretical background and applications to isotropic and anisotropic dielectrics
-
M.T. Cances, B. Mennucci, and J. Tomasi A new integral equation formalism for the polarizable continuum model: theoretical background and applications to isotropic and anisotropic dielectrics J. Chem. Phys. 107 1997 3032 3041
-
(1997)
J. Chem. Phys.
, vol.107
, pp. 3032-3041
-
-
Cances, M.T.1
Mennucci, B.2
Tomasi, J.3
-
41
-
-
75749083809
-
-
Gaussian Inc. Wallingford, CT
-
M.J. Frisch, G.W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G.A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H.P. Hratchian, A.F. Izmaylov, J. Bloino, G. Zheng, J.L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J.A. Montgomery Jr., J.E. Peralta, F. Ogliaro, M. Bearpark, J.J. Heyd, E. Brothers, K.N. Kudin, V.N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J.C. Burant, S.S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J.M. Millam, M. Klene, J.E. Knox, J.B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R.E. Stratmann, O. Yazyev, A.J. Austin, R. Cammi, C. Pomelli, J.W. Ochterski, R.L. Martin, K. Morokuma, V.G. Zakrzewski, G.A. Voth, P. Salvador, J.J. Dannenberg, S. Dapprich, A.D. Daniels, Ö. Farkas, J.B. Foresman, J.V. Ortiz, J. Cioslowski, and D.J. Fox Gaussian 09, Revision A. 02 2009 Gaussian Inc. Wallingford, CT
-
(2009)
Gaussian 09, Revision A. 02
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Scalmani, G.7
Barone, V.8
Mennucci, B.9
Petersson, G.A.10
Nakatsuji, H.11
Caricato, M.12
Li, X.13
Hratchian, H.P.14
Izmaylov, A.F.15
Bloino, J.16
Zheng, G.17
Sonnenberg, J.L.18
Hada, M.19
Ehara, M.20
Toyota, K.21
Fukuda, R.22
Hasegawa, J.23
Ishida, M.24
Nakajima, T.25
Honda, Y.26
Kitao, O.27
Nakai, H.28
Vreven, T.29
Montgomery, Jr.J.A.30
Peralta, J.E.31
Ogliaro, F.32
Bearpark, M.33
Heyd, J.J.34
Brothers, E.35
Kudin, K.N.36
Staroverov, V.N.37
Kobayashi, R.38
Normand, J.39
Raghavachari, K.40
Rendell, A.41
Burant, J.C.42
Iyengar, S.S.43
Tomasi, J.44
Cossi, M.45
Rega, N.46
Millam, J.M.47
Klene, M.48
Knox, J.E.49
Cross, J.B.50
Bakken, V.51
Adamo, C.52
Jaramillo, J.53
Gomperts, R.54
Stratmann, R.E.55
Yazyev, O.56
Austin, A.J.57
Cammi, R.58
Pomelli, C.59
Ochterski, J.W.60
Martin, R.L.61
Morokuma, K.62
Zakrzewski, V.G.63
Voth, G.A.64
Salvador, P.65
Dannenberg, J.J.66
Dapprich, S.67
Daniels, A.D.68
Farkas Ö.69
Foresman, J.B.70
Ortiz, J.V.71
Cioslowski, J.72
Fox, D.J.73
more..
-
42
-
-
70349932423
-
AutoDock4 and AutoDockTools4. Automated docking with selective receptor flexibility
-
G.M. Morris, R. Huey, W. Lindstrom, M.F. Sanner, R.K. Belew, D.S. Goodsell, and A.J. Olson AutoDock4 and AutoDockTools4. Automated docking with selective receptor flexibility J. Comput. Chem. 30 2009 2785 2791
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 2785-2791
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.J.7
-
43
-
-
2942532422
-
Development and testing of a general amber force field
-
J.M. Wang, R.M. Wolf, J.W. Caldwell, P.A. Kollman, and D.A. Case Development and testing of a general amber force field J. Comput. Chem. 25 2004 1157 1174
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.M.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
44
-
-
84866924167
-
Coupling between catalytic loop motions and enzyme global dynamics
-
Z. Kurkcuoglu, A. Bakan, D. Kocaman, I. Bahar, and P. Doruker Coupling between catalytic loop motions and enzyme global dynamics PLOS Comput. Biol. 8 2012 e1002705
-
(2012)
PLOS Comput. Biol.
, vol.8
, pp. e1002705
-
-
Kurkcuoglu, Z.1
Bakan, A.2
Kocaman, D.3
Bahar, I.4
Doruker, P.5
-
45
-
-
0035967901
-
The time scale of the catalytic loop motion in triosephosphate isomerase
-
S. Rozovsky, and A.E. McDermott The time scale of the catalytic loop motion in triosephosphate isomerase J. Mol. Biol. 310 2001 259 270
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 259-270
-
-
Rozovsky, S.1
McDermott, A.E.2
-
46
-
-
40549133186
-
Characterization of enzyme motions by solution NMR relaxation dispersion
-
J.P. Loria, R.B. Berlow, and E.D. Watt Characterization of enzyme motions by solution NMR relaxation dispersion Acc. Chem. Res. 41 2008 214 221
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 214-221
-
-
Loria, J.P.1
Berlow, R.B.2
Watt, E.D.3
-
47
-
-
0025785056
-
Refined 1.83 Å structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M ammonium sulphate
-
R.K. Wierenga, M.E.M. Noble, G. Vriend, and S. Nauche Refined 1.83 Å structure of trypanosomal triosephosphate isomerase crystallized in the presence of 2.4 M ammonium sulphate J. Mol. Biol. 220 1991 995 1015
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 995-1015
-
-
Wierenga, R.K.1
Noble, M.E.M.2
Vriend, G.3
Nauche, S.4
-
48
-
-
0028922586
-
LIGPLOT. A program to generate schematic diagrams of protein-ligand interactions
-
A.C. Wallace, R.A. Laskowski, and J.M. Thornton LIGPLOT. A program to generate schematic diagrams of protein-ligand interactions Protein Eng. 8 1995 127 134
-
(1995)
Protein Eng.
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
49
-
-
66349134420
-
Role of loop-loop interactions in coordinating motions and enzymatic function of triosephosphate isomerase
-
Y. Wang, R.B. Berlow, and J.P. Loria Role of loop-loop interactions in coordinating motions and enzymatic function of triosephosphate isomerase Biochemistry 48 2009 4548 4556
-
(2009)
Biochemistry
, vol.48
, pp. 4548-4556
-
-
Wang, Y.1
Berlow, R.B.2
Loria, J.P.3
-
50
-
-
77951953170
-
Non-competitive inhibition by active site binders
-
Y. Blat Non-competitive inhibition by active site binders Chem. Biol. Drug Des. 75 2010 535 540
-
(2010)
Chem. Biol. Drug Des.
, vol.75
, pp. 535-540
-
-
Blat, Y.1
-
51
-
-
4143068388
-
Inactivation of triosephosphate isomerase from Trypanosoma cruzi by an agent that perturbs its dimer interface
-
A. Téllez-Valencia, V. Olivares-Illana, A. Hernández-Santoyo, R. Pérez-Montfort, M. Costas, A. Rodríguez-Romero, F. López Calahorra, M. Tuena de Gómez-Puyou, and A. Gómez-Puyou Inactivation of triosephosphate isomerase from Trypanosoma cruzi by an agent that perturbs its dimer interface J. Mol. Biol. 341 2004 1355 1365
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 1355-1365
-
-
Téllez-Valencia, A.1
Olivares-Illana, V.2
Hernández-Santoyo, A.3
Pérez-Montfort, R.4
Costas, M.5
Rodríguez-Romero, A.6
López Calahorra, F.7
Tuena De Gómez-Puyou, M.8
Gómez-Puyou, A.9
-
52
-
-
80051966197
-
Structural conservation of druggable hot spots in protein-protein interfaces
-
D. Kozakov, D.R. Hall, G.Y. Chuang, R. Cencic, R. Brenke, L.E. Grove, D. Beglov, J. Pelletier, A. Whitty, and S. Vajda Structural conservation of druggable hot spots in protein-protein interfaces PNAS 108 2011 13528 13533
-
(2011)
PNAS
, vol.108
, pp. 13528-13533
-
-
Kozakov, D.1
Hall, D.R.2
Chuang, G.Y.3
Cencic, R.4
Brenke, R.5
Grove, L.E.6
Beglov, D.7
Pelletier, J.8
Whitty, A.9
Vajda, S.10
-
54
-
-
79960313955
-
Molecular recognition in the case of flexible targets
-
A. Ivetac, and J.A. McCammon Molecular recognition in the case of flexible targets Curr. Pharm. Des. 17 2011 1663 1671
-
(2011)
Curr. Pharm. Des.
, vol.17
, pp. 1663-1671
-
-
Ivetac, A.1
McCammon, J.A.2
-
55
-
-
53149132027
-
Structural basis of human triosephosphate isomerase deficiency: Mutation E104D is related to alterations of a conserved water network at the dimer interface
-
C. Rodríguez-Almazán, R. Arreola, D. Rodríguez-Larrea, B. Aguirre-López, M. Tuena de Gómez-Puyou, R. Pérez-Montfort, M. Costas, A. Gómez-Puyou, and A. Torres-Larios Structural basis of human triosephosphate isomerase deficiency: mutation E104D is related to alterations of a conserved water network at the dimer interface J. Biol. Chem. 283 2008 23254 23263
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 23254-23263
-
-
Rodríguez-Almazán, C.1
Arreola, R.2
Rodríguez-Larrea, D.3
Aguirre-López, B.4
Tuena De Gómez-Puyou, M.5
Pérez-Montfort, R.6
Costas, M.7
Gómez-Puyou, A.8
Torres-Larios, A.9
|