-
2
-
-
0029075130
-
Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
-
Mansky LM, Temin HM. 1995. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69:5087-5094.
-
(1995)
J. Virol.
, vol.69
, pp. 5087-5094
-
-
Mansky, L.M.1
Temin, H.M.2
-
3
-
-
77956820495
-
Nature, position, and frequency of mutations made in a single cycle of HIV-1 replication
-
Abram ME, Ferris AL, Shao W, Alvord WG, Hughes SH. 2010. Nature, position, and frequency of mutations made in a single cycle of HIV-1 replication. J. Virol. 84:9864-9878.
-
(2010)
J. Virol.
, vol.84
, pp. 9864-9878
-
-
Abram, M.E.1
Ferris, A.L.2
Shao, W.3
Alvord, W.G.4
Hughes, S.H.5
-
4
-
-
72949117233
-
The immune response during acute HIV-1 infection: clues for vaccine development
-
McMichael AJ, Borrow P, Tomaras GD, Goonetilleke N, Haynes BF. 2010. The immune response during acute HIV-1 infection: clues for vaccine development. Nat. Rev. Immunol. 10:11-23.
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 11-23
-
-
McMichael, A.J.1
Borrow, P.2
Tomaras, G.D.3
Goonetilleke, N.4
Haynes, B.F.5
-
6
-
-
80052153094
-
The genomic rate of molecular adaptation of the human influenza A virus
-
Bhatt S, Holmes EC, Pybus OG. 2011. The genomic rate of molecular adaptation of the human influenza A virus. Mol. Biol. Evol. 28:2443-2451.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2443-2451
-
-
Bhatt, S.1
Holmes, E.C.2
Pybus, O.G.3
-
7
-
-
0036720020
-
The Ka/Ks ratio: diagnosing the form of sequence evolution
-
Hurst LD. 2002. The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet. 18:486-487.
-
(2002)
Trends Genet.
, vol.18
, pp. 486-487
-
-
Hurst, L.D.1
-
8
-
-
1842509978
-
Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase
-
Chen L, Perlina A, Lee CJ. 2004. Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase. J. Virol. 78:3722-3732.
-
(2004)
J. Virol.
, vol.78
, pp. 3722-3732
-
-
Chen, L.1
Perlina, A.2
Lee, C.J.3
-
9
-
-
84856804646
-
The HIV-1 rev response element: anRNAscaffold that directs the cooperative assembly of a homooligomeric ribonucleoprotein complex
-
Fernandes J, Jayaraman B, Frankel A. 2012. The HIV-1 rev response element: anRNAscaffold that directs the cooperative assembly of a homooligomeric ribonucleoprotein complex. RNA Biol. 9:4-9.
-
(2012)
RNA Biol.
, vol.9
, pp. 4-9
-
-
Fernandes, J.1
Jayaraman, B.2
Frankel, A.3
-
10
-
-
68449092202
-
Architecture and secondary structure of an entire HIV-1 RNA genome
-
Watts JM, Dang KK, Gorelick RJ, Leonard CW, Bess JW, Jr, Swanstrom R, Burch CL, Weeks KM. 2009. Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 460:711-716.
-
(2009)
Nature
, vol.460
, pp. 711-716
-
-
Watts, J.M.1
Dang, K.K.2
Gorelick, R.J.3
Leonard, C.W.4
Bess, J.W.5
Swanstrom, R.6
Burch, C.L.7
Weeks, K.M.8
-
11
-
-
63349106458
-
The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA
-
Keating CP, Hill MK, Hawkes DJ, Smyth RP, Isel C, Le S-Y, Palmenberg AC, Marshall JA, Marquet R, Nabel GJ, Mak J. 2009. The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA. Nucleic Acids Res. 37:945-956.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 945-956
-
-
Keating, C.P.1
Hill, M.K.2
Hawkes, D.J.3
Smyth, R.P.4
Isel, C.5
Le, S-Y.6
Palmenberg, A.C.7
Marshall, J.A.8
Marquet, R.9
Nabel, G.J.10
Mak, J.11
-
12
-
-
0029619270
-
Reciprocal relationship between stem-loop potential and substitution density in retroviral quasispecies under positive Darwinian selection
-
Forsdyke DR. 1995. Reciprocal relationship between stem-loop potential and substitution density in retroviral quasispecies under positive Darwinian selection. J. Mol. Evol. 41:1022-1037.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 1022-1037
-
-
Forsdyke, D.R.1
-
13
-
-
80055055652
-
Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints
-
Snoeck J, Fellay J, Bartha I, Douek DC, Telenti A. 2011. Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints. Retrovirology 8:87.
-
(2011)
Retrovirology
, vol.8
, pp. 87
-
-
Snoeck, J.1
Fellay, J.2
Bartha, I.3
Douek, D.C.4
Telenti, A.5
-
14
-
-
84876844318
-
Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and nonconserved structural motifs
-
Pollom E, Dang KK, Potter EL, Gorelick RJ, Burch CL, Weeks KM, Swanstrom R. 2013. Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and nonconserved structural motifs. PLoS Pathog. 9:e1003294. doi:10.1371/journal.ppat.1003294.
-
(2013)
PLoS Pathog.
, vol.9
-
-
Pollom, E.1
Dang, K.K.2
Potter, E.L.3
Gorelick, R.J.4
Burch, C.L.5
Weeks, K.M.6
Swanstrom, R.7
-
15
-
-
76749139978
-
Recombination rate and selection strength in HIV intra-patient evolution
-
Neher RA, Leitner T. 2010. Recombination rate and selection strength in HIV intra-patient evolution. PLoS Comput. Biol. 6:e1000660. doi:10.1371/journal.pcbi.1000660.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Neher, R.A.1
Leitner, T.2
-
16
-
-
79955043851
-
Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection
-
Batorsky R, Kearney MF, Palmer SE, Maldarelli F, Rouzine IM, Coffin JM. 2011. Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection. Proc. Natl. Acad. Sci. U. S. A. 108:5661-5666.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 5661-5666
-
-
Batorsky, R.1
Kearney, M.F.2
Palmer, S.E.3
Maldarelli, F.4
Rouzine, I.M.5
Coffin, J.M.6
-
17
-
-
0032710838
-
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
-
Shankarappa R, Margolick JB, Gange SJ, Rodrigo AG, Upchurch D, Farzadegan H, Gupta P, Rinaldo CR, Learn GH, He X, Huang X-L, Mullins JI. 1999. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J. Virol. 73:10489-10502.
-
(1999)
J. Virol.
, vol.73
, pp. 10489-10502
-
-
Shankarappa, R.1
Margolick, J.B.2
Gange, S.J.3
Rodrigo, A.G.4
Upchurch, D.5
Farzadegan, H.6
Gupta, P.7
Rinaldo, C.R.8
Learn, G.H.9
He, X.10
Huang, X-L.11
Mullins, J.I.12
-
18
-
-
33748919693
-
Selection on the human immunodeficiency virus type 1 proteome following primary infection
-
Liu Y, McNevin J, Cao J, Zhao H, Genowati I, Wong K, McLaughlin S, McSweyn MD, Diem K, Stevens CE, Maenza J, He H, Nickle DC, Shriner D, Holte SE, Collier AC, Corey L, McElrath JM, Mullins JI. 2006. Selection on the human immunodeficiency virus type 1 proteome following primary infection. J. Virol. 80:9519-9529.
-
(2006)
J. Virol.
, vol.80
, pp. 9519-9529
-
-
Liu, Y.1
McNevin, J.2
Cao, J.3
Zhao, H.4
Genowati, I.5
Wong, K.6
McLaughlin, S.7
McSweyn, M.D.8
Diem, K.9
Stevens, C.E.10
Maenza, J.11
He, H.12
Nickle, D.C.13
Shriner, D.14
Holte, S.E.15
Collier, A.C.16
Corey, L.17
McElrath, J.M.18
Mullins, J.I.19
-
19
-
-
49149118421
-
Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection
-
Bunnik EM, Pisas L, Van Nuenen AC, Schuitemaker H. 2008. Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection. J. Virol. 82:7932-7941.
-
(2008)
J. Virol.
, vol.82
, pp. 7932-7941
-
-
Bunnik, E.M.1
Pisas, L.2
Van Nuenen, A.C.3
Schuitemaker, H.4
-
20
-
-
0004040205
-
HIV sequence compendium
-
Los Alamos, NM
-
Kuiken C, Leitner T, Hahn B, Mullins J, Wolinsky S, Foley B, Apetrei C, Mizrachi I, Rambaut A, Korber B. 2012. HIV sequence compendium. Los Alamos National Laboratory, Los Alamos, NM.
-
(2012)
Los Alamos National Laboratory
-
-
Kuiken, C.1
Leitner, T.2
Hahn, B.3
Mullins, J.4
Wolinsky, S.5
Foley, B.6
Apetrei, C.7
Mizrachi, I.8
Rambaut, A.9
Korber, B.10
-
21
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
22
-
-
84870840869
-
FFPopSim: an efficient forward simulation package for the evolution of large populations
-
Zanini F, Neher RA. 2012. FFPopSim: an efficient forward simulation package for the evolution of large populations. Bioinformatics 28:3332-3333.
-
(2012)
Bioinformatics
, vol.28
, pp. 3332-3333
-
-
Zanini, F.1
Neher, R.A.2
-
23
-
-
0029967721
-
HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time
-
Perelson AS, Neumann AU, Markowitz M, Leonard JM, Ho DD. 1996. HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science 271:1582-1586.
-
(1996)
Science
, vol.271
, pp. 1582-1586
-
-
Perelson, A.S.1
Neumann, A.U.2
Markowitz, M.3
Leonard, J.M.4
Ho, D.D.5
-
24
-
-
0037385686
-
A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo
-
Markowitz M, Louie M, Hurley A, Sun E, Di Mascio M, Perelson AS, Ho DD. 2003. A novel antiviral intervention results in more accurate assessment of human immunodeficiency virus type 1 replication dynamics and T-cell decay in vivo. J. Virol. 77:5037-5038.
-
(2003)
J. Virol.
, vol.77
, pp. 5037-5038
-
-
Markowitz, M.1
Louie, M.2
Hurley, A.3
Sun, E.4
Di Mascio, M.5
Perelson, A.S.6
Ho, D.D.7
-
26
-
-
84879511964
-
+ T-cells contain one HIV-1 DNA molecule
-
+ T-cells contain one HIV-1 DNA molecule. PLoS Pathog. 9:e1003432. doi:10.1371/journal.ppat.1003432.
-
(2013)
PLoS Pathog.
, vol.9
-
-
Josefsson, L.1
Palmer, S.2
Faria, N.R.3
Lemey, P.4
Casazza, J.5
Ambrozak, D.6
Kearney, M.7
Shao, W.8
Kottilil, S.9
Sneller, M.10
Mellors, J.11
Coffin, J.M.12
Maldarelli, F.13
-
27
-
-
84869234001
-
Ultrasensitive allele-specific PCR reveals rare preexisting drug-resistant variants and a large replicating virus population in macaques infected with a simian immunodeficiency virus containing human immunodeficiency virus reverse transcriptase
-
Boltz VF, Ambrose Z, Kearney MF, Shao W, KewalRamani VN, Maldarelli F, Mellors JW, Coffin JM. 2012. Ultrasensitive allele-specific PCR reveals rare preexisting drug-resistant variants and a large replicating virus population in macaques infected with a simian immunodeficiency virus containing human immunodeficiency virus reverse transcriptase. J. Virol. 86:12525-12530.
-
(2012)
J. Virol.
, vol.86
, pp. 12525-12530
-
-
Boltz, V.F.1
Ambrose, Z.2
Kearney, M.F.3
Shao, W.4
KewalRamani, V.N.5
Maldarelli, F.6
Mellors, J.W.7
Coffin, J.M.8
-
28
-
-
80051478113
-
Genetic draft and quasi-neutrality in large facultatively sexual populations
-
Neher RA, Shraiman B. 2011. Genetic draft and quasi-neutrality in large facultatively sexual populations. Genetics 188:975-996.
-
(2011)
Genetics
, vol.188
, pp. 975-996
-
-
Neher, R.A.1
Shraiman, B.2
-
29
-
-
33645768069
-
Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo
-
Asquith B, Edwards CTT, Lipsitch M, McLean AR. 2006. Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo. PLoS Biol. 4:e90. doi:10.1371/journal.pbio.0040090.
-
(2006)
PLoS Biol.
, vol.4
-
-
Asquith, B.1
Edwards, C.T.T.2
Lipsitch, M.3
McLean, A.R.4
-
30
-
-
70349686331
-
Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection
-
Moore PL, Ranchobe N, Lambson BE, Gray ES, Cave E, Abrahams M-R, Bandawe G, Mlisana K, Abdool Karim SS, Williamson C, Morris L, CAPRISA 002 study, NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI). 2009. Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection. PLoS Pathog. 5:e1000598. doi:10.1371/journal.ppat.1000598.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Moore, P.L.1
Ranchobe, N.2
Lambson, B.E.3
Gray, E.S.4
Cave, E.5
Abrahams, M-R.6
Bandawe, G.7
Mlisana, K.8
Abdool Karim, S.S.9
Williamson, C.10
Morris, L.11
-
31
-
-
0018468345
-
A comparison of three methods for selecting values of input variables in the analysis of output from a computer code
-
McKay MD, Beckman RJ, Conover WJ. 1979. A comparison of three methods for selecting values of input variables in the analysis of output from a computer code. Technometrics 21:239-245.
-
(1979)
Technometrics
, vol.21
, pp. 239-245
-
-
McKay, M.D.1
Beckman, R.J.2
Conover, W.J.3
-
32
-
-
0028952146
-
HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy
-
Coffin JM. 1995. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267:483-489.
-
(1995)
Science
, vol.267
, pp. 483-489
-
-
Coffin, J.M.1
-
33
-
-
79952856172
-
Interplay between RNA structure and protein evolution in HIV-1
-
Sanjuan R, Borderia AV. 2011. Interplay between RNA structure and protein evolution in HIV-1. Mol. Biol. Evol. 28:1333-1338.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 1333-1338
-
-
Sanjuan, R.1
Borderia, A.V.2
-
34
-
-
0037372775
-
The extent of codon usage bias in human RNA viruses and its evolutionary origin
-
Jenkins GM, Holmes EC. 2003. The extent of codon usage bias in human RNA viruses and its evolutionary origin. Virus Res. 92:1-7.
-
(2003)
Virus Res.
, vol.92
, pp. 1-7
-
-
Jenkins, G.M.1
Holmes, E.C.2
-
35
-
-
84868267075
-
The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus
-
van der Kuyl AC, Berkhout B. 2012. The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus. Retrovirology 9:92.
-
(2012)
Retrovirology
, vol.9
, pp. 92
-
-
van der Kuyl, A.C.1
Berkhout, B.2
-
36
-
-
0041571679
-
Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression
-
Williamson S. 2003. Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression. Mol. Biol. Evol. 20:1318-1325.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1318-1325
-
-
Williamson, S.1
-
37
-
-
0037456827
-
Antibody neutralization and escape by HIV-1
-
Wei X, Decker JM, Wang S, Hui H, Kappes JC, Wu X, Salazar-Gonzalez JF, Salazar MG, Kilby JM, Saag MS, Komarova NL, Nowak MA, Hahn BH, Kwong PD, Shaw GM. 2003. Antibody neutralization and escape by HIV-1. Nature 422:307-312.
-
(2003)
Nature
, vol.422
, pp. 307-312
-
-
Wei, X.1
Decker, J.M.2
Wang, S.3
Hui, H.4
Kappes, J.C.5
Wu, X.6
Salazar-Gonzalez, J.F.7
Salazar, M.G.8
Kilby, J.M.9
Saag, M.S.10
Komarova, N.L.11
Nowak, M.A.12
Hahn, B.H.13
Kwong, P.D.14
Shaw, G.M.15
-
38
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Smith JM, Haigh J. 1974. The hitch-hiking effect of a favourable gene. Genet. Res. 23:23-35.
-
(1974)
Genet. Res.
, vol.23
, pp. 23-35
-
-
Smith, J.M.1
Haigh, J.2
-
40
-
-
84863697528
-
Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape
-
Bar KJ, Tsao C-Y, Iyer SS, Decker JM, Yang Y, Bonsignori M, Chen X, Hwang K-K, Montefiori DC, Liao H-X, Hraber P, Fischer W, Li H, Wang S, Sterrett S, Keele BF, Ganusov VV, Perelson AS, Korber BT, Georgiev I, McLellan JS, Pavlicek JW, Gao F, Haynes BF, Hahn BH, Kwong PD, Shaw GM. 2012. Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape. PLoS Pathog. 8:e1002721. doi:10.1371/journal.ppat.1002721.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Bar, K.J.1
Tsao, C-Y.2
Iyer, S.S.3
Decker, J.M.4
Yang, Y.5
Bonsignori, M.6
Chen, X.7
Hwang, K-K.8
Montefiori, D.C.9
Liao, H-X.10
Hraber, P.11
Fischer, W.12
Li, H.13
Wang, S.14
Sterrett, S.15
Keele, B.F.16
Ganusov, V.V.17
Perelson, A.S.18
Korber, B.T.19
Georgiev, I.20
McLellan, J.S.21
Pavlicek, J.W.22
Gao, F.23
Haynes, B.F.24
Hahn, B.H.25
Kwong, P.D.26
Shaw, G.M.27
more..
-
41
-
-
77957901912
-
Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultradeep sequencing
-
Fischer W, Ganusov VV, Giorgi EE, Hraber PT, Keele BF, Leitner T, Han CS, Gleasner CD, Green L, Lo C-C, Nag A, Wallstrom TC, Wang S, McMichael AJ, Haynes BF, Hahn BH, Perelson AS, Borrow P, Shaw GM, Bhattacharya T, Korber BT. 2010. Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultradeep sequencing. PLoS One 5:e12303. doi:10.1371/journal.pone.0012303.
-
(2010)
PLoS One
, vol.5
-
-
Fischer, W.1
Ganusov, V.V.2
Giorgi, E.E.3
Hraber, P.T.4
Keele, B.F.5
Leitner, T.6
Han, C.S.7
Gleasner, C.D.8
Green, L.9
Lo, C-C.10
Nag, A.11
Wallstrom, T.C.12
Wang, S.13
McMichael, A.J.14
Haynes, B.F.15
Hahn, B.H.16
Perelson, A.S.17
Borrow, P.18
Shaw, G.M.19
Bhattacharya, T.20
Korber, B.T.21
more..
-
42
-
-
77955402078
-
Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing
-
Hedskog C, Mild M, Jernberg J, Sherwood E, Bratt G, Leitner T, Lundeberg J, Andersson B, Albert J. 2010. Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing. PLoS One 5:e11345. doi:10.1371/journal.pone.0011345.
-
(2010)
PLoS One
, vol.5
-
-
Hedskog, C.1
Mild, M.2
Jernberg, J.3
Sherwood, E.4
Bratt, G.5
Leitner, T.6
Lundeberg, J.7
Andersson, B.8
Albert, J.9
-
43
-
-
84879018021
-
On the role of four small hairpins in the HIV-1 RNA genome
-
Knoepfel SA, Berkhout B. 2013. On the role of four small hairpins in the HIV-1 RNA genome. RNA Biol. 10:512-524.
-
(2013)
RNA Biol.
, vol.10
, pp. 512-524
-
-
Knoepfel, S.A.1
Berkhout, B.2
-
44
-
-
34547844134
-
Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates
-
Mayrose I, Doron-Faigenboim A, Bacharach E, Pupko T. 2007. Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates. Bioinformatics 23:i319 -i327.
-
(2007)
Bioinformatics
, vol.23
, pp. 1319-1327
-
-
Mayrose, I.1
Doron-Faigenboim, A.2
Bacharach, E.3
Pupko, T.4
-
45
-
-
64249107628
-
Extensive purifying selection acting on synonymous sites in HIV-1 group M sequences
-
Ngandu NK, Scheffler K, Moore P, Woodman Z, Martin D, Seoighe C. 2008. Extensive purifying selection acting on synonymous sites in HIV-1 group M sequences. Virol. J. 5:160.
-
(2008)
Virol. J.
, vol.5
, pp. 160
-
-
Ngandu, N.K.1
Scheffler, K.2
Moore, P.3
Woodman, Z.4
Martin, D.5
Seoighe, C.6
-
46
-
-
84875546274
-
Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design
-
Ferguson AL, Mann JK, Omarjee S, Ndung'u T, Walker BD, Chakraborty AK. 2013. Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design. Immunity 38:606-617.
-
(2013)
Immunity
, vol.38
, pp. 606-617
-
-
Ferguson, A.L.1
Mann, J.K.2
Omarjee, S.3
Ndung'u, T.4
Walker, B.D.5
Chakraborty, A.K.6
-
47
-
-
79960569795
-
+ T cells from peripheral blood of HIV-1 infected individuals contain only one HIV DNA molecule
-
+ T cells from peripheral blood of HIV-1 infected individuals contain only one HIV DNA molecule. Proc. Natl. Acad. Sci. U. S. A. 108:11199-11204.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 11199-11204
-
-
Josefsson, L.1
King, M.S.2
Makitalo, B.3
Brannstrom, J.4
Shao, W.5
Maldarelli, F.6
Kearney, M.F.7
Hu, W-S.8
Chen, J.9
Gaines, H.10
Mellors, J.W.11
Albert, J.12
Coffin, J.M.13
Palmer, S.E.14
-
48
-
-
0032564366
-
Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy
-
Nijhuis M, Boucher CAB, Schipper P, Leitner T, Schuurman R, Albert J. 1998. Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy. Proc. Natl. Acad. Sci. U. S. A. 95: 14441-14446.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 14441-14446
-
-
Nijhuis, M.1
Boucher, C.A.B.2
Schipper, P.3
Leitner, T.4
Schuurman, R.5
Albert, J.6
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