Phylogenetic relationships in Opuntia (Cactaceae, Opuntioideae) from southern South America

Plant Systematics and Evolution

Volumn 301, Issue 4, 2015, Pages 1123-1134

  Realini, María F ^a,b   González, Graciela E ^a,b   Font, Fabián ^c   Picca, Pablo I ^c   Poggio, Lidia ^a,b   Gottlieb, Alexandra M ^a,b  

^a Ecología y Evolución de Buenos Aires   (Argentina)

^b Consejo Nacional de Investigaciones Científicas y Técnicas ^*  (Argentina)

^c UNIVERSIDAD DE BUENOS AIRES   (Argentina)

Author keywords

Cacti; ISSR; Phylogenetic analyses; Plastid intergenic spacers

Indexed keywords

CACTACEAE; COLUBRINA; OPUNTIA; OPUNTIA AURANTIACA; OPUNTIA MONACANTHA; OPUNTIA QUIMILO; OPUNTIA SULPHUREA; OPUNTIOIDEAE;

EID: 84925340705     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-014-1154-1     Document Type: Article

References (63)

1. Anderson EF (2001) The Cactus family. Timber Press, Portly
2. Arakaki M, Pascal-Antonie C, Nyffeler R, Lendel A, Eggli U, Ogburn RM, Spriggs E, Moore MJ, Edwards JE (2011) Contemporaneous and recent radiations of the world’s major succulent plant lineages. PNAS USA 108:8379–8384
3. Arias S, Terrazas T, Arreola-Nava F, Vázquez-Sánchez HJ, Cameron MK (2005) Phylogenetic relationships in Peniocereus (Cactaceae) inferred from plastid DNA sequence data. J Pl Res 118:317–328
4. Baker MA, Pinkava DJ (1987) A cytological and morphometric analysis of triploid apomict, O. x kelvinensis (subgenus Cylindropuntia, Cactaceae). Brittonia 39:387–401
5. Baker MA, Pinkava DJ (1999) A new Arizona hybrid cholla, Opuntia × campii (Cactaceae). Cact Succ J 71:320–322
6. Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molec Biol Evol 16:37–48
7. Bárcenas RT, Yesson C, Hawkins JA (2011) Molecular systematics of the Cactaceae. Cladistics 27:1–20
8. Barthlott W, Hunt DR (1993) Cactaceae. In: Kubitzki K, Rohwer JG, Bittrich V (eds) The families and genera of vascular plants. Springer, Berlin, pp 161–197
9. Benson LD, Walkington DL (1965) The southern California prickly pears: invasion, adulteration, and trial-by-fire. Ann Missouri Bot Gard 52:262–273
10. Bonatelli IAS, Zappi DC, Taylor NP, Moraes EM (2013) Usefulness of cpDNA markers for phylogenetic and phylogeographic analyses of closely-related cactus species. Genet Molec Res 12:4579–4585
11. Boyle TH, Anderson E (2002) Biodiversity and conservation. In: Nobel PS (ed) Cacti, biology and uses. University of California Press, Los Angeles, pp 274–316
12. Britton NL, Rose JN (1919) The Cactaceae, vol 1. Carnegie Institution of Washington, Washington
13. Bryant D, Moulton V (2004) Neighbor-Net: an agglomerative method for the construction of phylogenetic networks. Molec Biol Evol 21:255–265
14. Butterworth CA, Wallace RS (2004) Phylogenetic studies of Mammillaria (Cactaceae) insights from chloroplast sequence variation and hypothesis testing using the parametric bootstrap. Amer J Bot 91:1086–1098
15. Cariaga KA, Lewis CE, Maschinski J, Wright SJ, Francisco-Ortega J (2005) Patterns of genetic diversity in the critically endangered Florida Key endemic Consolea corallicola Small (Cactaceae): evidence from Inter-Simple Sequence Repeat (ISSRs) DNA polymorphisms. Caribbean J Sci 41:225–233
16. Caruso M, Curró S, Las Casas G, La Malfa S, Gentile A (2010) Microsatellite markers help to assess genetic diversity among Opuntia ficus-indica cultivated genotypes and their relation with related species. Pl Syst Evol 290:85–97
17. del Castillo RF, Argueta ST (2009) Reproductive implications of combined and separate sexes in a trioecious population of Opuntia robusta (Cactaceae). Amer J Bot 96:1148–1158
18. Díaz EL, Cocucci AA (2003) Functional ginodioecy in Opuntia quimilo (Cactaceae), a tree cactus pollinated by bees and hummingbirds. Pl Biol 5:531–539
19. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
20. Gaiero P, Mazzella C, Agostini G, Bertolazzi S, Rossato M (2011) Genetic diversity among endangered Uruguayan populations of Butia Becc. species based on ISSR. Pl Syst Evol 292:105–116
21. Gibson AC, Nobel PS (1986) The cactus primer. Harvard University Press, Cambridge
22. Goloboff P (1998) Principios básicos de cladística. Sociedad Argentina de Botánica, Argentina
23. Grant V, Grant KA (1971) Natural hybridization between the cholla cactus species Opuntiaspinosior and Opuntiaversicolor. Proc Natl Acad Sci USA 68:1993–1995
24. Grant V, Grant KA (1979) Systematics of the Opuntia pheacantha group in Texas. Bot Gaz 140:199–207
25. Griffith MP (2001a) Experimental hybridization in northern Chihuahuan Desert region Opuntia. Aliso 20:37–42
26. Griffith MP (2001b) A new Chihuahuan Desert prickly pear, Opuntia rooneyi. Cact Succ J 73:307–310
27. Griffith MP (2004) The origins of an important cactus crop, Opuntia ficus-indica (Cactaceae): new molecular evidence. Amer J Bot 91:1915–1921
28. Griffith MP, Porter JM (2009) Phylogeny of Opuntioideae (Cactaceae). Int J Pl Sci 170:107–116
29. Guiggi A (2010) Genera nova et combinations novae in cactaceis austroamericanis ad subfamiliam Opuntioideae K. Schumann spectantibus. Suppl Cactol 2:1–4
30. Hall TA (1999) BioEdit: a friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Series 41:95–98
31. Hamming RW (1950) Error detecting and error correcting codes. Bell Sys Tech J 29:147–160
32. Hernández-Hernández T, Hernández HM, De-Nova JA, Puente R, Eguiarte LE, Magallón S (2011) Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae). Amer J Bot 98:44–61
33. Hunt D, Taylor N, Charles G (2006) The New Cactus Lexicon. DH Books, Milborne Port
34. Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molec Biol Evol 23:254–267
35. Jakob SS, Blattner FR (2006) A chloroplast genealogy of Hordeum (Poaceae): long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference. Molec Biol Evol 23:1602–1612
36. Labra M, Grassi F, Bardini M, Imazio S, Guiggi A, Citterio S, Banfi E, Sgorbati S (2003) Relationships in Opuntia Mill. genus (Cactaceae) detected by molecular marker. Int J Pl Sci 165:1129–1136
37. Lenzi M, Orth AI (2012) Mixed reproduction systems in Opuntia monacantha (Cactaceae) in Southern Brazil. Brazil J Bot 35:49–58
38. Leuenberger BE (2002) The South American Opuntia ser. Armatae (= O. ser. Elatae) (Cactaceae). Bot Jahrb Syst 123:413–439
39. Long A (2012) Opuntia ventanensis (Cactaceae), a new species from the Province of Buenos Aires, Argentina. Haseltonia 18:79–84
40. Luna-Páez A, Valadez-Moctezuma E, Barrientos-Priego AF, Gallegos-Vázquez C (2007) Caracterización de Opuntia spp. mediante semilla con marcadores RAPD e ISSR y su posible uso para diferenciación. J Profess Assoc Cact Devel 9:43–59
41. Majure LC, Puente R, Griffith MP, Judd WS, Soltis PS, Soltis DE (2012) Phylogeny of Opuntia s.s. (Cactaceae): clade delineation, geographic origins, and reticulate evolution. Amer J Bot 99:847–864
42. Mansyah E, Sobir Santosa E, Poerwanto R (2010) Assessment of inter simple sequence repeat (ISSR) technique in mangosteen (Garcinia mangostana L.) grown in different Sumatra region. J Hort Forest 2:127–134
43. Mishra PK, Fox RTV, Culham A (2003) Inter-simple sequence repeat and aggressiveness analyses revealed high genetic diversity, recombination and long-range dispersal in Fusarium culmorum. Ann Apl Biol 143:291–301
44. Nattero J, Malerba R (2011) Biología de especies australes: Opuntia quimilo Schum. Kurtziana 36:79–87
45. Nyffeler R (2002) Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trnK/matK and trnL-trnF sequences. Amer J Bot 89:312–326
46. Pinkava DJ (2002) On the evolution of continental North American Opuntioideae. Succ Pl Res 6:59–98
47. Porter JM, Kinney M, Heil KD (2000) Relationships between Sclerocactus and Toumeya (Cactaceae) based on chloroplast trnL-trnF sequences. Haseltonia 7:8–19
48. Rana TS, Narzary D, Ohri D (2012) Molecular differentiation of Chenopodiumalbum complex and some related species using ISSR profiles and ITS sequences. Gene 495:29–35
49. Reyes-Agüero JA, Aguirre JR, Valiente-Banuet A (2006) Reproductive biology of Opuntia: a review. J Arid Envir 64:549–585
50. Ritz CM, Martins L, Mecklenburg R, Goremykin V, Hellwig FH (2007) The molecular phylogeny of Rebutia (Cactaceae) and its allies demonstrates the influence of paleogeography on the evolution of South American mountain cacti. Amer J Bot 94:1321–1332
51. Ruas PM, Ruas CF, Rampim L, Carvalho VP, Ruas EA, Sera T (2003) Genetic relationship in Coffea species and parentage determination of interspecific hybrids using ISSR (Inter-Simple Sequence Repeat) markers. Genet Molec Biol 26:319–327
52. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Molec Biol Evol 4:406–425
53. Schlindwein C, Wittmann D (1997) Stamen movements in flowers of Opuntia (Cactaceae) favour oligolectic pollinators. Pl Syst Evol 204:179–193
54. Souto Alves T, Vanusa da Silva M, Alves de Almeida CM, Oliveira Jordão do Amaral D, Cordeiro dos Santos D, Farias I, Tenório Sabino Donato VM, Da Costa AF (2009) Genetic diversity in cactus clones using ISSR markers. In: VI International Congress on Cactus Pear and Cochineal, Acta Hort (ISHS), vol 811, pp 55–58
55. Stegemann S, Keuthe M, Greiner S, Bock R (2012) Horizontal transfer of chloroplast genomes between plant species. Proc Natl Acad Sci USA 109:2434–2438
56. Taberlet P, Gieselly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non coding regions of chloroplast DNA. Pl Molec Biol 17:1105–1109
57. Tamura K (1992) Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C content biases. Molec Biol Evol 9:678–687
58. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molec Biol Evol 24:1596–1599
59. Wallace RS, Dickie SL (2002) Systematic implication of chloroplast DNA sequence variation in subfamily Opuntioideae (Cactaceae). Succ Pl Res 6:9–24
60. Wallace RS, Gibson AC (2002) Evolution and systematics. In: Nobel PS (ed) Cacti, biology and uses. University of California Press, Los Angeles, pp 1–21
61. Wang X-M (2011) Inter-simple sequence repeats (ISSR) molecular fingerprinting markers for authenticating the genuine species of rhubarb. J Med Pl Res 5:758–764
62. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfy D, Sininsky J, White T (eds) PCR protocols. A guide to methods and applications. Academic Press, San Diego, pp 315–322
63. Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176–183