Inter-simple sequence repeat and aggressiveness analyses revealed high genetic diversity, recombination and long-range dispersal in Fusarium culmorum

Annals of Applied Biology

Volumn 143, Issue 3, 2003, Pages 291-301

  Mishra, Prashant K ^a,b   Fox, Roland T V ^a   Culham, Alastair ^a  

^a UNIVERSITY OF READING   (United Kingdom)

^b UNIVERSITY OF MAINE   (United States)

Author keywords

Aggressiveness; Biogeography; Fusarium culmorum; Genome fingerprinting; Inter simple sequence repeats; Intraspecific variation; Population genetics; Recombination

Indexed keywords

AGGRESSION; DISPERSAL; FUNGUS; INTRASPECIFIC VARIATION; POPULATION GENETICS; RECOMBINATION;

FUNGI; FUSARIUM CULMORUM; TRITICUM AESTIVUM;

EID: 0344099376     PISSN: 00034746     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2003.tb00297.x     Document Type: Article

References (52)

1. Booth C. 1971. The Genus Fusarium. Kew, England: Commonwealth Mycological Institute. 237 pp.
2. Brayford D. 1996. Fusarium molecules maketh the mould. Sydowia 48:163-183.
3. Brown A H D, Feldman M W, Nevo E. 1980. Multilocus structure of natural populations of Hordeum spontaneum. Genetics 96:523-536.
4. Burt A, Carter D A, Koenig G L, White T J, Taylor J W. 1996. Molecular markers reveal cryptic sex in human pathogen Coccidioides immitis. Proceedings of the National Academy of Sciences of the United States of America 93:770-773.
5. Carter J P, Rezanoor H N, Desjardins A E, Nicholson P. 2000. Variation in Fusarium graminearum isolates from Nepal associated with their host of origin. Plant Pathology 49:1-10.
6. Coetzee M P A, Wingfield B D, Harrington T C, Steimel J, Coutinho T A, Wingfield M J. 2001. The root rot fungus Armillaria mellea introduced into South Africa by early Dutch settlers. Molecular Ecology 10:387-396.
7. Cook R J. 1981. Fusarium diseases of wheat and other small grains in North America. In Fusarium: Diseases, Biology and Taxonomy, pp. 39-52. Eds P E Nelson, T A Toussoun and R J Cook. Pennsylvania, USA: The Pennsylvania State University Press.
8. Darwin C. 1859. The Origin of Species. London, England: John Murray. 502 pp.
9. de Nijs M, Larson J S, Gams W, Rombouts F M, Wernars K, Thrane U, Notermans S H W. 1997. Variation in random amplified polymorphic DNA patterns and secondary metabolic profiles within Fusarium species from cereals from various parts of The Netherlands. Food Microbiology 14:449-457.
10. Douhan G W, Peever T L, Murray T D. 2002. Multilocus population structure of Tapesia yallundae in Washington State. Molecular Ecology 11:2229-2239.
11. Esselman E J, Jianqiang L, Crawford D J, Windus J L, Wolfe A D. 1999. Clonal diversity in the rare Calamagrostis porteri ssp. insperata (Poaceae): comparative results for allozymes and random amplified polymorphic DNA (RAPD) and intersimple sequence repeat (ISSR) markers. Molecular Ecology 8:443-451.
12. Gale L R, Chen L F, Hernick C A, Takamura K, Kistler H C. 2002. Population analysis of Fusarium graminearum from wheat fields in eastern China. Phytopathology 92:1315-1322.
13. Gang G, Miedaner T, Schuhmacher U, Schollenberger M, Geiger H H. 1998. Deoxynivalenol and nivalenol production by Fusarium culmorum isolates differing in aggressiveness toward winter rye. Phytopathology 88:879-884.
14. Giraud T, Fournier E, Vautrin D, Solignac M, Vercken E, Bakan B, Brygoo Y. 2002. Isolation of eight polymorphic microsatellite loci using an enrichment protocol in the phytopathogenic fungus Fusarium culmorum. Molecular Ecology Notes 2:121-123.
15. Hantula J, Muller M. 1997. Variation within Gremmeniella abietina in Finland and other countries as determined by Random Amplified Microsatellites (RAMS). Mycological Research 101:169-175.
16. Hantula J, Lilja A, Nuorteva H, Parikka P, Werres S. 2000. Pathogenicity, morphology and genetic variation of Phytophthora cactorum from strawberry, apple, rhododendron, and silver birch. Mycological Research 104:1062-1068.
17. Hull C M, Raisner R M, Johnson A D. 2000. Evidence for mating of the asexual yeast Candida albicans in a mammalian host. Science 289:307-310.
18. Khare M N, Mathur S B, Neergaard P. 1977. A seedling symptom test for detection of Septoria nodorum in wheat seed. Seed Science and Technology 5:613-617.
19. Lee S B, Taylor J W. 1990. Isolation of DNA from fungal mycelia and single spores. In PCR Protocols: A Guide To Methods and Applications, pp. 282-287. Eds M A Innis, D H Gelfand, J J Sninsky and T J White. New York, USA: Academic Press.
20. Longato S, Bonfante P. 1997. Molecular identification of mycorrhizal fungi by direct amplification of microsatellite regions. Mycological Research 101:425-432.
21. Magee B B, Magee P T. 2000. Induction of mating in Candida albicans by construction of MTLa and MTLα strains. Science 289:310-313.
22. Marasas W F O, Nelson P E, Toussoun T A. 1984. Toxigenic Fusarium species: Identity and Mycotoxicology. Pennsylvania, USA: The Pennsylvania State University Press. 350 pp.
23. McDonald B A, Zhan J, Yarden O, Hogan K, Garton J, Pettway R E. 1999. The population genetics of Mycosphaerella graminicola and Phaeosphaeria nodorum. In Septoria on Cereals: A Study of Pathosystems, pp. 44-69. Eds J A Lucas, P Bowyer and H M Anderson. Wallingford, UK: CABI Publishers.
24. McMullen M, Jones R, Gallenberg D. 1997. Scab of wheat and barley: a re-emerging disease of devastating impact. Plant Disease 81:1340-1348.
25. Miedaner T, Gang G, Geiger H H. 1996. Quantitative-genetic basis of aggressiveness of 42 isolates of Fusarium culmorum for winter rye head blight. Plant Disease 80:500-504.
26. Miedaner T, Schilling A G, Geiger H H. 2001. Molecular genetic diversity and variation for aggressiveness in populations of Fusarium graminearum and Fusarium culmorum sampled from wheat fields in different countries. Journal of Phytopathology 149:641-648.
27. Mishra P K. 2002. Genomics and Evolutionary Biology of Fusarium culmorum. Ph.D. Thesis, The University of Reading, UK.
28. Mishra P K, Fox R T V, Culham A. 2000. Application of nr-DNA ITS sequence for identification of Fusarium culmorum isolates. EPPO Bulletin 30:493-498.
29. Mishra P K, Fox R T V, Culham A. 2002. Restriction analysis of PCR amplified nrDNA regions revealed intraspecific variation within populations of Fusarium culmorum. FEMS Microbiology Letters 215:291-296.
30. Muller R, Pasberg-Gauhl C, Gauhl F, Ramser J, Kahl G. 1997. Oligonucleotide fingerprinting detects genetic variability at different levels in Nigerian Mycosphaerella fijiensis. Journal of Phytopathology 145:25-30.
31. Nei M, Li W H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America 76:5269-5273.
32. Nelson P E, Toussoun T A, Marasas W F O. 1983. Fusarium Species: An Illustrated Manual for Identification. Pennsylvania, USA: Pennsylvania State University Press. 193 pp.
33. Nicholson P, Jenkinson P, Rezanoor H N, Parry D W. 1993. Restriction fragment length polymorphism analysis of variation in Fusarium species causing ear blight of cereals. Plant Pathology 42:905-914.
34. O'Donnell K, Cigelnik E, Casper H H. 1998a. Molecular phylogenetic, morphological and mycotoxin data support reidentification of the quorn mycoprotein fungus as Fusarium venenatum. Fungal Genetics and Biology 23:57-67.
35. O'Donnell K, Cigelnik E, Nirenberg H I. 1998b. Molecular systematics and phylogeography of Gibberella fujikuroi species complex. Mycologia 90:465-493.
36. Parry D W, Jenkinson P, McLeod L. 1995. Fusarium ear blight (scab) in small grain cereals - a review. Plant Pathology 44:207-238.
37. Polley R W, Turner J A. 1995. Surveys of stem base diseases and Fusarium ear diseases in winter wheat in England, Wales and Scotland, 1989-90. Annals of Applied Biology 126:45-49.
38. Puhalla J E. 1981. Genetic considerations of the genus Fusarium. In Fusarium: Diseases, Biology and Taxonomy, pp. 291-305. Eds P E Nelson, T A Toussoun and R J Cook. Pennsylvania, USA: The Pennsylvania State University Press.
39. Schilling A G, Möller E M, Gieger H H. 1996. Polymerase chain reaction based assays for species-specific detection of Fusarium culmorum, F. graminearum and F. avenaceum. Phytopathology 86:515-522.
40. Shifrin V I, Anderson P. 1999. Trichothecene mycotoxins trigger a ribotoxic stress response that activates c-Jun N-terminal kinase and p38 mitogen-activated protein kinase and induces apoptosis. Journal of Biological Chemistry 274:13985-13992.
41. Smith M J. 1999. The detection and measurement of recombination from sequence data. Genetics 153:1021-1027.
42. Snijders C H A. 1990. Fusarium head blight and mycotoxin contamination of wheat, a review. Netherlands Journal of Plant Pathology 96:187-198.
43. Swofford D L. 1998. PAUP 4.0: phylogenetic analysis using parsimony. Sunderland, MA, USA: Sinauer Associates.
44. Taylor J W, Geiser D M, Burt A, Koufopanou V. 1999. The evolutionary biology and population genetics underlying fungal strain typing. Clinical Microbiology Review 12:126-146.
45. Tibayrenc M. 1997. Are Candida albicans natural populations subdivided? Trends in Microbiology 5:253-254.
46. Tooley P W, O'Neill N R, Goley E D, Carras M M. 2000. Assessment of diversity in Claviceps africana and other Claviceps species by RAM and AFLP analysis. Phytopathology 90:1126-1130.
47. Tuite J, Shaner G, Everson R J. 1990. Wheat scab in soft red winter wheat in Indiana in 1986 and its relation to some quality measurements. Plant Disease 74:959-962.
48. van Eeuwijk A, Mesterhazy C I, Kling P, Ruckenbauer L, Saur H, Burstmayr M, Lemmens L C P, Keizer N, Maurin C H A, Snijder T. 1995. Assessing non-specificity of resistance in wheat to head blight caused by inoculation with European strains of Fusarium culmorum, F. graminearum and F. nivale using a multiplicative model for interaction. Theoretical and Applied Genetics 90:221-228.
49. Withanage G S K, Murata H, Koyana T, Ishiwata I. 2001. Agonistic and antagonistic effects of zearalenone, an etrogenic mycotoxin, on SKN, HHUA, and HepG2 human cancer cell lines. Veterinary and Human Toxicology 43:6-10.
50. Wolfe A D, Liston A. 1998. Contributions of PCR-based methods to plant systematics and evolutionary biology. In Plant Molecular Systematic. Eds D E Soltis, P S Soltis and J J Doyle. New York, USA: Chapman & Hall.
51. Wolfe A D, Kephart S R, Xiang Q Y. 1998. Diploid hybrid speciation in Penstemon (Scrophulariaceae). Proceedings of the National Academy of Sciences of the United States of America 95:5112-5115.
52. Zietkiewicz E, Rafalski A, Labuda D. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genome 20:176-183.