Characterization of Opuntia spp. by means of seed with RAPD and ISSR markers and its possible use for differentiation;Caracterización de Opuntia spp. mediante semilla con marcadores RAPD e ISSR y su posible uso para diferenciación

Journal of the Professional Association for Cactus Development

Volumn 9, Issue , 2007, Pages 43-81

  Luna Paez, Arturo ^a   Valadez Moctezuma, Ernestina ^a   Barrientos Priego, Alejandro F ^a   Gallegos Vázquez, Clemente ^a  

^a UNIVERSIDAD AUTÓNOMA CHAPINGO   (Mexico)

Author keywords

Cactus pear; DNA fingerprinting; Genetic variability; Interspecific distinction; Multivariate analysis; PCR

Indexed keywords

CACTACEAE; OPUNTIA; PYRUS;

EID: 41649118942     PISSN: 19386648     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (36)

1. Arnholdt-Schmitt, B., G. L. Coe, R. M. Llamoca-Zárate and A. P. F. Campos. 2001. Genome Characterization of Opuntia ficus-indica: A simple and efficient micromethod. Journal of the Professional Association for Cactus Development 4:57-65.
2. Barrientos-Pérez, F., A. Muratalla-Lua and A. F. Barrientos-Priego. 1993. New hybrids of Opuntia, chapter 18. pp. 243-251. In: Biotechnology for Aridland Plants. IC2 Institute The University of Texas at Austin. Austin, TX, USA.
3. Bravo H., E. 1978. Las Cactáceas de México. Vol I. Universidad Nacional Autónoma de México. Ciudad Universitaria. D.F., México. 743 p.
4. Bravo-Hollis, H. and L.Scheinvar. 1999. El Interesante Mundo de las Cactáceas. 2da edición. Fondo de Cultura Económica. D. F., México. 233 p.
5. De la Cruz, M., F. Ramírez and H. Hernández. 1997. DNA isolation and amplifed from cacti. Plant Molecular Biology Reporter 15:319-325.
6. Fernández, M., A. Figueiras and C. Benito. 2002. The use of ISSR and RAPD markers for detecting DNA polymorphism, genotype identification and genetic diversity among barley cultivars with known origin. Theoretical and Applied Genetics 104(5):845-851.
7. Granados S., A. and A. D. Castañeda P. 1991. El Nopal. Historia, Fisiología, Genética e Importancia Frutícola. Editorial Trillas. D. F., México. 227 p.
8. Griffith, P. M. 2004. The origins of an important cactus crop, Opuntia ficus-indica (Cactaceae): new molecular evidence. American Journal of Botany 91:1911-1921.
9. Guerrero-Muñoz, P., H. A. Zavaleta-Mancera, A. F. Barrientos-Priego, C. Gallegos-Vázquez, C. A. Nuñez-Colín and E. Valadez-Moctezuma, J. A. Cuevas-Sánchez. 2006. Técnica para el estudio de la micromorfologia interna de semillas duras en Opuntia. Revista Fitotecnia Mexicana 29(2):37-43.
10. Handa, L., B. P. de T. Sampaio and R. C. Quisen. 2005. Cultura in vitro de embriões e de gemas de mudas de pau-rosa (Aniba rosaeodora Ducke). Acta Amazonica 35(1):29-33.
11. Huang, J. C. and M. Sun. 2000. Genetic diversity and relationships of sweetpotato and its wild relatives in Ipomoea series Batatas (Convolvulaceae) as revealed by inter-simple sequence repeat (ISSR) and restriction analysis of chloroplast DNA. Theoretical and Applied Genetics 100(7):1050-1060.
12. Iruela, M., J. Rubio, J. I. Cubero, J. Gil and T. Millán. 2002. Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theoretical and Applied Genetics 104(4):643-651.
13. Kiesling, R. 1999. Domesticación y distribución de Opuntia ficus-indica. Journal of the Professional Association for Cactus Development 3:50-59.
14. Labra, M., F. Grassi, M. Bardini, S. Imazio, A. Guiggi, S. Citterrop, E. Banfi, and S. Sgorbati. 2003. Genetic relationships in Opuntia Mill. genus (Cactaceae) detected by molecular marker. Plant Science 165:1129-1136.
15. Martins, M., R. Tenreiro and M. M. Oliveira. 2003. Genetic relatedness of Portuguese almond cultivars assessed by RAPD and ISSR markers. Plant Cell Reports 22(1):71-78.
16. Mondragón-Jacobo, C. 2003. Molecular characterization using RAPDs of a cactus (Opuntia spp. Cactaceae) collection from central México as a basis for plant breeding. Revista Chapingo Serie Horticultura 9(1):97-114.
17. Mondragón-Jacobo, C. 2004. Mejoramiento genético del nopal: Avances al 2003 y perspectivas, pp. 49-71. In: El Nopal: Tópicos de Actualidad. Esparza-Frausto, G.; Valdez-Cepeda, R. D.; Méndez- Gallegos, S. J. (eds.). Universidad Autónoma Chapingo. Chapingo, México.
18. Mondragón-Jacobo, C. and B. Bordelon. 2002. Presencia de apomixis en cruzas de nopales mexicanos y su identificación molecular preliminar. Revista Fitotecnia Mexicana 25(3):247-252.
19. Mondragón-Jacobo, C., N. Doudareva and B. Bordelon, 2000. DNA extraction from several cacti. HortScience 35(6): 1121-1126.
20. Moxon, R. and C. Wills. 1999. DNA Microsatellites: Agents of evolution?. Scientific American 280(1):72-77.
21. Nagaoka, T. and Y. Ogihara. 1997. Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theoretical and Applied Genetics 94(5):597-602.
22. Nelson, R, J., M. R. Baraoidan, C. C. M. Vera, I. V. Yap, J. E. Leach, T. W. Mew and H. Nyboon. 1994. Relationship between phylogeny and pathotype for the bacterial bligth pathogen of rice. Appl. Environ. Microbiol. 60:3275-3283.
23. Patzak, J. 2001. Comparison of RAPD, STS, ISSR and AFLP molecular methods used for assessment of genetic diversity in hop (Humulus lupulus L.) Euphytica 121(1):9-18.
24. Pimienta Barrios, E. 1990. El Nopal Tunero. Universidad de Guadalajara. Jalisco, México. 246 p.
25. Pimienta-Barrios, E. and A. Muñoz-Urias. 1995. Domestication of Opuntias and cultivated varieties, pp. 58-61. In: Barbera, G.; Inlgese, P.; Pimienta-Barrios, E. (eds.). Agro-ecology, Cultivation and Uses of Cactus Pear. International Technical Cooperation Network on Cactus Pear. FAO publications. Rome, Italy.
26. Raina, S. N., V. Rani, T. Kojima, Y. Ogihara, K. P. Singh and R. M. Devarumath, 2001. RAPD and ISSR fingerprints as useful genetic markers for analysis of genetic diversity, varietal identification, and phylogenetic relationships in peanut (Arachis hypogaea) cultivars and wild species. Genome 44(5): 763-772.
27. Reyes-Agüero, J. A., J. R. Aguirre R., and J. L. Flores F. 2005. Variación morfológica de Opuntia (Cactaceae) en relación con su domesticación en la altiplanicie meridional de México. Interciencia 30(8):476-484.
28. Reyes-Agüero, J. A., J. R. Aguirre R., A. Valiente-Banuet, 2006. Reproductive biology of Opuntia: A review. Journal of Arid Environments 64:549-585.
29. Saitu, N., and M. Nei. 1987. The neighbor-joining method: a new method for constructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.
30. Sambrook, J., E. F. Fritsch, and T. Maniatis, 1989. Gel electrophoresis of DNA. pp. 6.0-6.62. In: Molecular Cloning: A Laboratory Manual. Vol I. Second edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA.
31. Scarano, M. T., L. Abbate, S. Ferrante, S. Lucretti, and N. Tusa. 2002. ISSR-PCR technique: a useful method for characterizing new allotetraploid somatic hybrids of mandarin. Plant Cell Reports 20(12): 1162-1166.
32. Segura L., S., L. Scheinvar, G. Olalde, S. Leblanc, S. Filardo, A. Muratalla, C. Gallegos, and C. Flores. 2007. Genome sizes and ploidy levels in Mexican cactus pear species Opuntia (Tourn.) Mill. Series Stretacanthae Britton et Rose, Leucotrichae DC., Heliabravonae Schienvar and Robustae Britton et Rose. Genetic Resources and Crop Evolution (in press).
33. Segura L., S. D. 2003. Diversidad morfológica interespecí fica del subgénero Tacsonia (Passiflora), pp. 79-84. In: Análisis Estadístico de Datos de Caracterización Morfológica de Recursos Fitogenéticos. (eds.) Franco, T. L. e Hidalgo, R.. Boletin Técnico no. 8, Instituto Internacional de Recursos Fitogenéticos (IPGRI), Cali, Colombia.
34. Valadez, E. and G. Kahl. 2000. Huellas Genómicas de ADN de Plantas (Teoría y Protocolos de Laboratorio). Ed. Mundi-Prensa S. A. D. F., México. 147 p.
35. Vladimir, H., A. Pavlícek and J. Flegr. 2001. Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasities. International Journal of Systematic and Evolutionary Macrobiology 51:731-735.
36. Wang, X., P. Felker, D. M. Burow and H. A. Paterson. 1998. Comparison of RAPD marker patterns to morphological and physiological data in the classification of Opuntia accessions. Journal of the Professional Association for Cactus Development 3:3-14.