메뉴 건너뛰기




Volumn 12, Issue 1, 2015, Pages

Identification and characterization of diverse groups of endogenous retroviruses in felids

Author keywords

Endogenous retroviruses; Felids; Neotropical cats; pro pol region

Indexed keywords

POL PROTEIN;

EID: 84925340419     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/s12977-015-0152-x     Document Type: Article
Times cited : (6)

References (45)
  • 1
    • 33750214531 scopus 로고    scopus 로고
    • The discovery of endogenous retroviruses
    • Weiss RA. The discovery of endogenous retroviruses. Retrovirology. 2006;3:67.
    • (2006) Retrovirology , vol.3 , pp. 67
    • Weiss, R.A.1
  • 2
    • 0042371625 scopus 로고    scopus 로고
    • The evolution, distribution and diversity of endogenous retroviruses
    • Gifford R, Tristem M. The evolution, distribution and diversity of endogenous retroviruses. Virus Genes. 2003;26:291-315.
    • (2003) Virus Genes , vol.26 , pp. 291-315
    • Gifford, R.1    Tristem, M.2
  • 3
    • 70350223641 scopus 로고    scopus 로고
    • Classification and nomenclature of endogenous retroviral sequences (ERVs): problems and recommendations
    • Blomberg J, Benachenhou F, Blikstad V, Sperber G, Mayer J. Classification and nomenclature of endogenous retroviral sequences (ERVs): problems and recommendations. Gene. 2009;448:115-23.
    • (2009) Gene , vol.448 , pp. 115-123
    • Blomberg, J.1    Benachenhou, F.2    Blikstad, V.3    Sperber, G.4    Mayer, J.5
  • 4
    • 84924230064 scopus 로고    scopus 로고
    • Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes
    • Chong AY, Kojima KK, Jurka J, Ray DA, Smit AFA, Isberg SR, et al. Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes. Retrovirology. 2014;11:71.
    • (2014) Retrovirology , vol.11 , pp. 71
    • Chong, A.Y.1    Kojima, K.K.2    Jurka, J.3    Ray, D.A.4    Smit, A.F.A.5    Isberg, S.R.6
  • 5
    • 84898673851 scopus 로고    scopus 로고
    • On the concept and elucidation of endogenous retroviruses
    • Weiss RA. On the concept and elucidation of endogenous retroviruses. Philos Trans R Soc Lond B Biol Sci. 2013;368:20120494.
    • (2013) Philos Trans R Soc Lond B Biol Sci , vol.368 , pp. 20120494
    • Weiss, R.A.1
  • 6
    • 0033049550 scopus 로고    scopus 로고
    • Interclass Transmission and Phyletic Host Tracking in Murine Leukemia Virus-Related Retroviruses
    • Martin J, Herniou E, Cook J, Waugh O'Neill R, Tristem M. Interclass Transmission and Phyletic Host Tracking in Murine Leukemia Virus-Related Retroviruses. J Virol. 1999;73:2442-9.
    • (1999) J Virol , vol.73 , pp. 2442-2449
    • Martin, J.1    Herniou, E.2    Cook, J.3    Waugh O'Neill, R.4    Tristem, M.5
  • 7
    • 84890276747 scopus 로고    scopus 로고
    • Broad-scale phylogenomics provides insights into retrovirus-host evolution
    • Hayward A, Grabherr M, Jern P. Broad-scale phylogenomics provides insights into retrovirus-host evolution. PNAS. 2013;110:20146-51.
    • (2013) PNAS , vol.110 , pp. 20146-20151
    • Hayward, A.1    Grabherr, M.2    Jern, P.3
  • 8
    • 84898674273 scopus 로고    scopus 로고
    • Paleovirology: inferring viral evolution from host genome sequence data
    • Katzourakis A. Paleovirology: inferring viral evolution from host genome sequence data. Phil Trans R Soc B. 2013;368:20120493.
    • (2013) Phil Trans R Soc B , vol.368 , pp. 20120493
    • Katzourakis, A.1
  • 10
    • 18144416157 scopus 로고    scopus 로고
    • Evolution and distribution of class II-related endogenous retroviruses
    • Gifford RJ, Kabat P, Martin J, Lynch C, Tristem M. Evolution and distribution of class II-related endogenous retroviruses. J Virol. 2005;79:6478-86.
    • (2005) J Virol , vol.79 , pp. 6478-6486
    • Gifford, R.J.1    Kabat, P.2    Martin, J.3    Lynch, C.4    Tristem, M.5
  • 12
    • 50549088884 scopus 로고    scopus 로고
    • Sequences annotation and single nucleotide polymorphism of the major histocompatibility complex in the domestic Cat
    • Yuhki N, Mullikin JC, Beck T, Stephens R, O'Brien SJ. Sequences annotation and single nucleotide polymorphism of the major histocompatibility complex in the domestic Cat. PLoS ONE. 2008;3:e2674.
    • (2008) PLoS ONE , vol.3 , pp. e2674
    • Yuhki, N.1    Mullikin, J.C.2    Beck, T.3    Stephens, R.4    O'Brien, S.J.5
  • 13
    • 84865079289 scopus 로고    scopus 로고
    • Infectious endogenous retroviruses in cats and emergence of recombinant viruses
    • Anai Y, Ochi H, Watanabe S, Nakagawa S, Kawamura M, Gojobori T, et al. Infectious endogenous retroviruses in cats and emergence of recombinant viruses. J Virol. 2012;86:8634-44.
    • (2012) J Virol , vol.86 , pp. 8634-8644
    • Anai, Y.1    Ochi, H.2    Watanabe, S.3    Nakagawa, S.4    Kawamura, M.5    Gojobori, T.6
  • 14
    • 84879157292 scopus 로고    scopus 로고
    • Identification and classification of feline endogenous retroviruses in the cat genome using degenerate PCR and in silico data analysis
    • Song N, Jo H, Choi M, Kim J-H, Seo HG, Cha S-Y, et al. Identification and classification of feline endogenous retroviruses in the cat genome using degenerate PCR and in silico data analysis. J Gen Virol. 2013;94:1587-96.
    • (2013) J Gen Virol , vol.94 , pp. 1587-1596
    • Song, N.1    Jo, H.2    Choi, M.3    Kim, J.-H.4    Seo, H.G.5    Cha, S.-Y.6
  • 17
    • 0028999625 scopus 로고
    • A highly divergent retroviral sequence in the tuatara (Sphenodon)
    • Tristem M, Myles T, Hill F. A highly divergent retroviral sequence in the tuatara (Sphenodon). Virology. 1995;210:206-11.
    • (1995) Virology , vol.210 , pp. 206-211
    • Tristem, M.1    Myles, T.2    Hill, F.3
  • 18
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in repbase: repbase submitter and censor
    • Kohany O, Gentles AJ, Hankus L, Jurka J. Annotation, submission and screening of repetitive elements in repbase: repbase submitter and censor. BMC Bioinformatics. 2006;7:474.
    • (2006) BMC Bioinformatics , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurka, J.4
  • 19
    • 0021231594 scopus 로고
    • Molecular genetic characterization of the RD-114 gene family of endogenous feline retroviral sequences
    • Reeves RH, O'Brien SJ. Molecular genetic characterization of the RD-114 gene family of endogenous feline retroviral sequences. J Virol. 1984;52:164-71.
    • (1984) J Virol , vol.52 , pp. 164-171
    • Reeves, R.H.1    O'Brien, S.J.2
  • 20
    • 84892877574 scopus 로고    scopus 로고
    • The tiger genome and comparative analysis with lion and snow leopard genomes
    • Cho YS, Hu L, Hou H, Lee H, Xu J, Kwon S, et al. The tiger genome and comparative analysis with lion and snow leopard genomes. Nat Commun. 2013;4:2433.
    • (2013) Nat Commun , vol.4 , pp. 2433
    • Cho, Y.S.1    Hu, L.2    Hou, H.3    Lee, H.4    Xu, J.5    Kwon, S.6
  • 21
    • 77649118434 scopus 로고    scopus 로고
    • Paleovirology-modern consequences of ancient viruses
    • Emerman M, Malik HS. Paleovirology-modern consequences of ancient viruses. PLoS Biol. 2010;8:e1000301.
    • (2010) PLoS Biol , vol.8 , pp. e1000301
    • Emerman, M.1    Malik, H.S.2
  • 22
    • 43049153392 scopus 로고    scopus 로고
    • Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology
    • Pecon-Slattery J, Troyer JL, Johnson WE, O'Brien SJ. Evolution of feline immunodeficiency virus in Felidae: implications for human health and wildlife ecology. Vet Immunol Immunopathol. 2008;123:32-44.
    • (2008) Vet Immunol Immunopathol , vol.123 , pp. 32-44
    • Pecon-Slattery, J.1    Troyer, J.L.2    Johnson, W.E.3    O'Brien, S.J.4
  • 23
    • 84868350400 scopus 로고    scopus 로고
    • Unexpected diversity and expression of avian endogenous retroviruses
    • e00344-12
    • Bolisetty M, Blomberg J, Benachenhou F, Sperber G, Beemon K. Unexpected diversity and expression of avian endogenous retroviruses. MBio. 2012;3:e00344-12.
    • (2012) MBio , vol.3
    • Bolisetty, M.1    Blomberg, J.2    Benachenhou, F.3    Sperber, G.4    Beemon, K.5
  • 24
    • 0016757753 scopus 로고
    • Evolution of type C viral genes: origin of feline leukemia virus
    • Benveniste RE, Sherr CJ, Todaro GJ. Evolution of type C viral genes: origin of feline leukemia virus. Science. 1975;190:886-8.
    • (1975) Science , vol.190 , pp. 886-888
    • Benveniste, R.E.1    Sherr, C.J.2    Todaro, G.J.3
  • 26
    • 75749137233 scopus 로고    scopus 로고
    • Restrictions to cross-species transmission of lentiviral infection gleaned from studies of FIV
    • VandeWoude S, Troyer J, Poss M. Restrictions to cross-species transmission of lentiviral infection gleaned from studies of FIV. Vet Immunol Immunopathol. 2010;134:25-32.
    • (2010) Vet Immunol Immunopathol , vol.134 , pp. 25-32
    • VandeWoude, S.1    Troyer, J.2    Poss, M.3
  • 27
    • 0141591054 scopus 로고    scopus 로고
    • Wild Cats of the World
    • University of Chicago Press
    • Sunquist M, Sunquist F: Wild Cats of the World: University of Chicago Press; 2002.
    • (2002)
    • Sunquist, M.1    Sunquist, F.2
  • 28
    • 0029947320 scopus 로고    scopus 로고
    • Amplification of divergent retroelements by PCR
    • Tristem M. Amplification of divergent retroelements by PCR. BioTechniques. 1996;20:608-12.
    • (1996) BioTechniques , vol.20 , pp. 608-612
    • Tristem, M.1
  • 30
    • 27344432183 scopus 로고    scopus 로고
    • Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy
    • Jern P, Sperber GO, Blomberg J. Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy. Retrovirology. 2005;2:50.
    • (2005) Retrovirology , vol.2 , pp. 50
    • Jern, P.1    Sperber, G.O.2    Blomberg, J.3
  • 31
    • 0003903343 scopus 로고
    • Molecular cloning: a laboratory manual: Cold Spring Harbour Laboratory
    • Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: a laboratory manual: Cold Spring Harbour Laboratory; 1989.
    • (1989)
    • Sambrook, J.1    Fritsch, E.F.2    Maniatis, T.3
  • 32
    • 84913588820 scopus 로고    scopus 로고
    • Molecular characterization of SINEs integrated in endogenous retrovirus sequences from Leopardus geoffroyi and Puma concolor
    • Mata H, Gongora J, Ravazzolo AP. Molecular characterization of SINEs integrated in endogenous retrovirus sequences from Leopardus geoffroyi and Puma concolor. Acta Sci Vet. 2013;41:1133.
    • (2013) Acta Sci Vet , vol.41 , pp. 1133
    • Mata, H.1    Gongora, J.2    Ravazzolo, A.P.3
  • 33
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731-9.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 34
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: improvements in performance and usability
    • Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:772-80.
    • (2013) Mol Biol Evol , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 35
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 2000;17:540-52.
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 36
    • 0033621090 scopus 로고    scopus 로고
    • Constructing primate phylogenies from ancient retrovirus sequences
    • Johnson WE, Coffin JM. Constructing primate phylogenies from ancient retrovirus sequences. PNAS. 1999;96:10254-60.
    • (1999) PNAS , vol.96 , pp. 10254-10260
    • Johnson, W.E.1    Coffin, J.M.2
  • 37
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 1980;16:111-20.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 38
    • 5144227841 scopus 로고    scopus 로고
    • Retroelements and the human genome: new perspectives on an old relation
    • Bannert N, Kurth R. Retroelements and the human genome: new perspectives on an old relation. PNAS. 2004;101:14572-9.
    • (2004) PNAS , vol.101 , pp. 14572-14579
    • Bannert, N.1    Kurth, R.2
  • 39
    • 0031041407 scopus 로고    scopus 로고
    • Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals
    • Lopez JV, Culver M, Stephens JC, Johnson WE, O'Brien SJ. Rates of nuclear and cytoplasmic mitochondrial DNA sequence divergence in mammals. Mol Biol Evol. 1997;14:277-86.
    • (1997) Mol Biol Evol , vol.14 , pp. 277-286
    • Lopez, J.V.1    Culver, M.2    Stephens, J.C.3    Johnson, W.E.4    O'Brien, S.J.5
  • 41
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 2006;22:2688-90.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 42
    • 84860434973 scopus 로고    scopus 로고
    • raxmlGUI: a graphical front-end for RAxML
    • Silvestro D, Michalak I. raxmlGUI: a graphical front-end for RAxML. Org Divers Evol. 2012;12:335-7.
    • (2012) Org Divers Evol , vol.12 , pp. 335-337
    • Silvestro, D.1    Michalak, I.2
  • 43
    • 45849154165 scopus 로고    scopus 로고
    • ModelTest: Phylogenetic Model Averaging
    • Posada D. ModelTest: Phylogenetic Model Averaging. Mol Biol Evol. 2008;25:1253-6.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 44
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics. 2005;21:2104-5.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 45
    • 1842431481 scopus 로고    scopus 로고
    • Genomically intact endogenous feline leukemia viruses of recent origin
    • Roca AL, Pecon-Slattery J, O'Brien SJ. Genomically intact endogenous feline leukemia viruses of recent origin. J Virol. 2004;78:4370-5.
    • (2004) J Virol , vol.78 , pp. 4370-4375
    • Roca, A.L.1    Pecon-Slattery, J.2    O'Brien, S.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.