메뉴 건너뛰기




Volumn 8, Issue 2, 2010, Pages

Paleovirology - Modern consequences of ancient viruses

Author keywords

[No Author keywords available]

Indexed keywords

TRIPARTITE MOTIF PROTEIN 5; VIRUS DNA; VIRUS RNA;

EID: 77649118434     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1000301     Document Type: Review
Times cited : (134)

References (49)
  • 1
    • 24944569270 scopus 로고    scopus 로고
    • The evolutionary dynamics of endogenous retroviruses
    • Katzourakis A, Rambaut A, Pybus OG (2005) The evolutionary dynamics of endogenous retroviruses. Trends Microbiol 13: 463-468.
    • (2005) Trends Microbiol , vol.13 , pp. 463-468
    • Katzourakis, A.1    Rambaut, A.2    Pybus, O.G.3
  • 3
    • 33750341578 scopus 로고    scopus 로고
    • The evolutionary dynamics of human endogenous retroviral families
    • Bannert N, Kurth R (2006) The evolutionary dynamics of human endogenous retroviral families. Annu Rev Genomics Hum Genet 7: 149-173.
    • (2006) Annu Rev Genomics Hum Genet , vol.7 , pp. 149-173
    • Bannert, N.1    Kurth, R.2
  • 4
    • 0034003229 scopus 로고    scopus 로고
    • Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences
    • Salemi M, Desmyter J, Vandamme AM (2000) Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences. Mol Biol Evol 17: 374-386.
    • (2000) Mol Biol Evol , vol.17 , pp. 374-386
    • Salemi, M.1    Desmyter, J.2    Vandamme, A.M.3
  • 5
    • 61849143903 scopus 로고    scopus 로고
    • Integration target site selection by a resurrected human endogenous retrovirus
    • Brady T, Lee YN, Ronen K,Malani N, Berry CC, et al. (2009) Integration target site selection by a resurrected human endogenous retrovirus. Genes Dev 23: 633-642.
    • (2009) Genes Dev , vol.23 , pp. 633-642
    • Brady, T.1    Lee, Y.N.2    Ronen, K.3    Malani, N.4    Berry, C.C.5
  • 6
    • 0036798062 scopus 로고    scopus 로고
    • Retroelement distributions in the human genome: Variations associated with age and proximity to genes
    • Medstrand P, van de Lagemaat LN, Mager DL (2002) Retroelement distributions in the human genome: variations associated with age and proximity to genes. Genome Res 12: 1483-1495.
    • (2002) Genome Res , vol.12 , pp. 1483-1495
    • Medstrand, P.1    van de Lagemaat, L.N.2    Mager, D.L.3
  • 7
    • 58149500187 scopus 로고    scopus 로고
    • A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution
    • Gifford RJ, Katzourakis A, Tristem M, Pybus OG, Winters M, et al. (2008) A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution. Proc Natl Acad Sci U S A 105: 20362-20367.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 20362-20367
    • Gifford, R.J.1    Katzourakis, A.2    Tristem, M.3    Pybus, O.G.4    Winters, M.5
  • 8
    • 63449127325 scopus 로고    scopus 로고
    • Gilbert C, Maxfield DG, Goodman SM, Feschotte C (2009) Parallel germline infiltration of a lentivirus in two Malagasy lemurs. PLoS Genet 5: e1000425.
    • Gilbert C, Maxfield DG, Goodman SM, Feschotte C (2009) Parallel germline infiltration of a lentivirus in two Malagasy lemurs. PLoS Genet 5: e1000425.
  • 9
    • 73849140080 scopus 로고    scopus 로고
    • Horie M, Honda T, Suzuki Y, Kobayashi Y, Daito T, et al. (2010) Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 463: 84-87.
    • Horie M, Honda T, Suzuki Y, Kobayashi Y, Daito T, et al. (2010) Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 463: 84-87.
  • 10
    • 20144388927 scopus 로고    scopus 로고
    • Ancient co-speciation of simian foamy viruses and primates
    • Switzer WM, Salemi M, Shanmugam V, Gao F, Cong ME, et al. (2005) Ancient co-speciation of simian foamy viruses and primates. Nature 434: 376-380.
    • (2005) Nature , vol.434 , pp. 376-380
    • Switzer, W.M.1    Salemi, M.2    Shanmugam, V.3    Gao, F.4    Cong, M.E.5
  • 12
    • 0036176083 scopus 로고    scopus 로고
    • Origins of human virus diversity
    • Sharp PM (2002) Origins of human virus diversity. Cell 108: 305-312.
    • (2002) Cell , vol.108 , pp. 305-312
    • Sharp, P.M.1
  • 13
    • 53849133821 scopus 로고    scopus 로고
    • Evolutionary history and phylogeography of human viruses
    • Holmes EC (2008) Evolutionary history and phylogeography of human viruses. Annu Rev Microbiol 62: 307-328.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 307-328
    • Holmes, E.C.1
  • 14
    • 14144249365 scopus 로고    scopus 로고
    • Poxvirus genome evolution by gene gain and loss
    • Hughes AL, Friedman R (2005) Poxvirus genome evolution by gene gain and loss. Mol Phylogenet Evol 35: 186-195.
    • (2005) Mol Phylogenet Evol , vol.35 , pp. 186-195
    • Hughes, A.L.1    Friedman, R.2
  • 15
    • 34547505117 scopus 로고    scopus 로고
    • Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals
    • Piskurek O, Okada N (2007) Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals. Proc Natl Acad Sci U S A 104: 12046-12051.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 12046-12051
    • Piskurek, O.1    Okada, N.2
  • 16
    • 34248666415 scopus 로고    scopus 로고
    • Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae
    • Wang N, Baldi PF, Gaut BS (2007) Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae. Mol Phylogenet Evol 43: 1066-1075.
    • (2007) Mol Phylogenet Evol , vol.43 , pp. 1066-1075
    • Wang, N.1    Baldi, P.F.2    Gaut, B.S.3
  • 17
    • 19344369742 scopus 로고    scopus 로고
    • Adaptation and immunity
    • Holmes EC (2004) Adaptation and immunity. PLoS Biol 2: E307.
    • (2004) PLoS Biol , vol.2
    • Holmes, E.C.1
  • 18
    • 14544281087 scopus 로고    scopus 로고
    • Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain
    • Sawyer SL, Wu LI, Emerman M, Malik HS (2005) Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. Proc Natl Acad Sci U S A 102: 2832-2837.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 2832-2837
    • Sawyer, S.L.1    Wu, L.I.2    Emerman, M.3    Malik, H.S.4
  • 19
    • 38949096858 scopus 로고    scopus 로고
    • Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein
    • Kerns JA, Emerman M, Malik HS (2008) Positive selection and increased antiviral activity associated with the PARP-containing isoform of human zinc-finger antiviral protein. PLoS Genet 4: e21.
    • (2008) PLoS Genet , vol.4
    • Kerns, J.A.1    Emerman, M.2    Malik, H.S.3
  • 20
    • 50849100134 scopus 로고    scopus 로고
    • Antiretroelement activity of APOBEC3H was lost twice in recent human evolution
    • OhAinle M, Kerns JA, Li MM, Malik HS, Emerman M (2008) Antiretroelement activity of APOBEC3H was lost twice in recent human evolution. Cell Host Microbe 4: 249-259.
    • (2008) Cell Host Microbe , vol.4 , pp. 249-259
    • OhAinle, M.1    Kerns, J.A.2    Li, M.M.3    Malik, H.S.4    Emerman, M.5
  • 21
    • 58749102026 scopus 로고    scopus 로고
    • Protein kinase R reveals an evolutionary model for defeating viral mimicry
    • Elde NC, Child SJ, Geballe AP, Malik HS (2009) Protein kinase R reveals an evolutionary model for defeating viral mimicry. Nature 457: 485-489.
    • (2009) Nature , vol.457 , pp. 485-489
    • Elde, N.C.1    Child, S.J.2    Geballe, A.P.3    Malik, H.S.4
  • 22
    • 27744461175 scopus 로고    scopus 로고
    • Evolution of cyclophilin A and TRIMCyp retrotransposition in New World primates
    • Ribeiro IP, Menezes AN, Moreira MA, Bonvicino CR, Seuanez HN, et al. (2005) Evolution of cyclophilin A and TRIMCyp retrotransposition in New World primates. J Virol 79: 14998-15003.
    • (2005) J Virol , vol.79 , pp. 14998-15003
    • Ribeiro, I.P.1    Menezes, A.N.2    Moreira, M.A.3    Bonvicino, C.R.4    Seuanez, H.N.5
  • 23
    • 3242876747 scopus 로고    scopus 로고
    • Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1
    • Sayah DM, Sokolskaja E, Berthoux L, Luban J (2004) Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1. Nature 430: 569-573.
    • (2004) Nature , vol.430 , pp. 569-573
    • Sayah, D.M.1    Sokolskaja, E.2    Berthoux, L.3    Luban, J.4
  • 25
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, et al. (2007) Genome-wide detection and characterization of positive selection in human populations. Nature 449: 913-918.
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1    Varilly, P.2    Fry, B.3    Lohmueller, J.4    Hostetter, E.5
  • 27
    • 21144441344 scopus 로고    scopus 로고
    • Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans
    • Yohn CT, Jiang Z, McGrath SD, Hayden KE, Khaitovich P, et al. (2005) Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans. PLoS Biol 3: e110.
    • (2005) PLoS Biol , vol.3
    • Yohn, C.T.1    Jiang, Z.2    McGrath, S.D.3    Hayden, K.E.4    Khaitovich, P.5
  • 28
  • 29
    • 34547726099 scopus 로고    scopus 로고
    • Foamy Viruses
    • Knipe D, Howley PM, eds, 5th ed. Philadelphia: Lippincott Williams and Wilkins. pp
    • Linial M (2007) Foamy Viruses. In: Knipe D, Howley PM, eds. Fields Virology. 5th ed. Philadelphia: Lippincott Williams and Wilkins. pp 2245-2262.
    • (2007) Fields Virology , pp. 2245-2262
    • Linial, M.1
  • 32
    • 33845296602 scopus 로고    scopus 로고
    • Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements
    • Dewannieux M, Harper F, Richaud A, Letzelter C, Ribet D, et al. (2006) Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res 16: 1548-1556.
    • (2006) Genome Res , vol.16 , pp. 1548-1556
    • Dewannieux, M.1    Harper, F.2    Richaud, A.3    Letzelter, C.4    Ribet, D.5
  • 33
    • 34250839345 scopus 로고    scopus 로고
    • Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein
    • Kaiser SM, Malik HS, Emerman M (2007) Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein. Science 316: 1756-1758.
    • (2007) Science , vol.316 , pp. 1756-1758
    • Kaiser, S.M.1    Malik, H.S.2    Emerman, M.3
  • 34
    • 33846542981 scopus 로고    scopus 로고
    • Reconstitution of an infectious human endogenous retrovirus
    • Lee YN, Bieniasz PD (2007) Reconstitution of an infectious human endogenous retrovirus. PLoS Pathog 3: e10.
    • (2007) PLoS Pathog , vol.3
    • Lee, Y.N.1    Bieniasz, P.D.2
  • 35
    • 55449124844 scopus 로고    scopus 로고
    • Perez-Caballero D, Soll SJ, Bieniasz PD (2008) Evidence for restriction of ancient primate gammaretroviruses by APOBEC3 but not TRIM5alpha proteins. PLoS Pathog 4: e1000181.
    • Perez-Caballero D, Soll SJ, Bieniasz PD (2008) Evidence for restriction of ancient primate gammaretroviruses by APOBEC3 but not TRIM5alpha proteins. PLoS Pathog 4: e1000181.
  • 36
    • 26444490055 scopus 로고    scopus 로고
    • Characterization of the reconstructed 1918 Spanish influenza pandemic virus
    • Tumpey TM, Basler CF, Aguilar PV, Zeng H, Solorzano A, et al. (2005) Characterization of the reconstructed 1918 Spanish influenza pandemic virus. Science 310: 77-80.
    • (2005) Science , vol.310 , pp. 77-80
    • Tumpey, T.M.1    Basler, C.F.2    Aguilar, P.V.3    Zeng, H.4    Solorzano, A.5
  • 37
    • 34249089649 scopus 로고    scopus 로고
    • Origins of major human infectious diseases
    • Wolfe ND, Dunavan CP, Diamond J (2007) Origins of major human infectious diseases. Nature 447: 279-283.
    • (2007) Nature , vol.447 , pp. 279-283
    • Wolfe, N.D.1    Dunavan, C.P.2    Diamond, J.3
  • 38
    • 38849104932 scopus 로고    scopus 로고
    • Evidence of the recombinant origin of a bat severe acute respiratory syndrome (SARS)-like coronavirus and its implications on the direct ancestor of SARS coronavirus
    • Hon CC, Lam TY, Shi ZL, Drummond AJ, Yip CW, et al. (2008) Evidence of the recombinant origin of a bat severe acute respiratory syndrome (SARS)-like coronavirus and its implications on the direct ancestor of SARS coronavirus. J Virol 82: 1819-1826.
    • (2008) J Virol , vol.82 , pp. 1819-1826
    • Hon, C.C.1    Lam, T.Y.2    Shi, Z.L.3    Drummond, A.J.4    Yip, C.W.5
  • 39
    • 67049119333 scopus 로고    scopus 로고
    • Wertheim JO, Worobey M (2009) Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2. PLoS Comput Biol 5: e1000377.
    • Wertheim JO, Worobey M (2009) Dating the age of the SIV lineages that gave rise to HIV-1 and HIV-2. PLoS Comput Biol 5: e1000377.
  • 40
    • 0037404062 scopus 로고    scopus 로고
    • The origin, emergence and evolutionary genetics of dengue virus
    • Holmes EC, Twiddy SS (2003) The origin, emergence and evolutionary genetics of dengue virus. Infect Genet Evol 3: 19-28.
    • (2003) Infect Genet Evol , vol.3 , pp. 19-28
    • Holmes, E.C.1    Twiddy, S.S.2
  • 41
    • 35648983510 scopus 로고    scopus 로고
    • On the origin of smallpox: Correlating variola phylogenics with historical smallpox records
    • Li Y, Carroll DS, Gardner SN, Walsh MC, Vitalis EA, et al. (2007) On the origin of smallpox: correlating variola phylogenics with historical smallpox records. Proc Natl Acad Sci U S A 104: 15787-15792.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 15787-15792
    • Li, Y.1    Carroll, D.S.2    Gardner, S.N.3    Walsh, M.C.4    Vitalis, E.A.5
  • 42
    • 25144501550 scopus 로고    scopus 로고
    • Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): Implications for present-day activity
    • Belshaw R, Dawson AL, Woolven-Allen J, Redding J, Burt A, et al. (2005) Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity. J Virol 79: 12507-12514.
    • (2005) J Virol , vol.79 , pp. 12507-12514
    • Belshaw, R.1    Dawson, A.L.2    Woolven-Allen, J.3    Redding, J.4    Burt, A.5
  • 43
    • 55549119927 scopus 로고    scopus 로고
    • Evolution of human endogenous retroviral sequences: A conceptual account
    • Blikstad V, Benachenhou F, Sperber GO, Blomberg J (2008) Evolution of human endogenous retroviral sequences: a conceptual account. Cell Mol Life Sci 65: 3348-3365.
    • (2008) Cell Mol Life Sci , vol.65 , pp. 3348-3365
    • Blikstad, V.1    Benachenhou, F.2    Sperber, G.O.3    Blomberg, J.4
  • 44
    • 0030895289 scopus 로고    scopus 로고
    • Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences
    • Takahata N, Satta Y (1997) Evolution of the primate lineage leading to modern humans: phylogenetic and demographic inferences from DNA sequences. Proc Natl Acad Sci U S A 94: 4811-4815.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 4811-4815
    • Takahata, N.1    Satta, Y.2
  • 45
    • 49249129966 scopus 로고    scopus 로고
    • A human TRIM5alpha B30.2/SPRY domain mutant gains the ability to restrict and prematurely uncoat B-tropic murine leukemia virus
    • Diaz-Griffero F, Perron M, McGee-Estrada K, Hanna R, Maillard PV, et al. (2008) A human TRIM5alpha B30.2/SPRY domain mutant gains the ability to restrict and prematurely uncoat B-tropic murine leukemia virus. Virology 378: 233-242.
    • (2008) Virology , vol.378 , pp. 233-242
    • Diaz-Griffero, F.1    Perron, M.2    McGee-Estrada, K.3    Hanna, R.4    Maillard, P.V.5
  • 46
    • 37849044361 scopus 로고    scopus 로고
    • Interfering residues narrow the spectrum of MLV restriction by human TRIM5alpha
    • Maillard PV, Reynard S, Serhan F, Turelli P, Trono D (2007) Interfering residues narrow the spectrum of MLV restriction by human TRIM5alpha. PLoS Pathog 3: e200.
    • (2007) PLoS Pathog , vol.3
    • Maillard, P.V.1    Reynard, S.2    Serhan, F.3    Turelli, P.4    Trono, D.5
  • 47
    • 10944259799 scopus 로고    scopus 로고
    • The B30.2(SPRY) domain of the retroviral restriction factor TRIM5alpha exhibits lineage-specific length and sequence variation in primates
    • Song B, Gold B, O'Huigin C, Javanbakht H, Li X, et al. (2005) The B30.2(SPRY) domain of the retroviral restriction factor TRIM5alpha exhibits lineage-specific length and sequence variation in primates. J Virol 79: 6111-6121.
    • (2005) J Virol , vol.79 , pp. 6111-6121
    • Song, B.1    Gold, B.2    O'Huigin, C.3    Javanbakht, H.4    Li, X.5
  • 48
    • 13944259674 scopus 로고    scopus 로고
    • Species-specific variation in the B30.2(SPRY) domain of TRIM5alpha determines the potency of human immunodeficiency virus restriction
    • Stremlau M, Perron M, Welikala S, Sodroski J (2005) Species-specific variation in the B30.2(SPRY) domain of TRIM5alpha determines the potency of human immunodeficiency virus restriction. J Virol 79: 3139-3145.
    • (2005) J Virol , vol.79 , pp. 3139-3145
    • Stremlau, M.1    Perron, M.2    Welikala, S.3    Sodroski, J.4
  • 49
    • 11844278251 scopus 로고    scopus 로고
    • A single amino acid change in the SPRY domain of human Trim5alpha leads to HIV-1 restriction
    • Yap MW, Nisole S, Stoye JP (2005) A single amino acid change in the SPRY domain of human Trim5alpha leads to HIV-1 restriction. Curr Biol 15: 73-78.
    • (2005) Curr Biol , vol.15 , pp. 73-78
    • Yap, M.W.1    Nisole, S.2    Stoye, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.